View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21254_low_10 (Length: 258)
Name: NF21254_low_10
Description: NF21254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21254_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 41757175 - 41756960
Alignment:
| Q |
1 |
aactgtatgcaatttgggtattgatcaactatatatgtcgcacatacaacagttgtagaacccttagatctagaaagagaacatttttctctaaatcgaa |
100 |
Q |
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| T |
41757175 |
aactgtatgcaatttgggtattgatcaactatatatgtcgcacatacaacagttgtagaacccttagatctagaaagagaacatttttctctaaatcgaa |
41757076 |
T |
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| Q |
101 |
cttgacttggttacaagttagttgtgattagttgaaaattgatagaatggaaaagctcgattataatgagtgtatgatacacttttagagtgatctttac |
200 |
Q |
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| T |
41757075 |
cttgacttggttacaagttagttgtgattagttgaaaattgatagaatggaaaagctcgattataatgagtgtatgatacacttttagagtgatctttac |
41756976 |
T |
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| Q |
201 |
taagctaactgatcat |
216 |
Q |
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|||||||||||||||| |
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| T |
41756975 |
taagctaactgatcat |
41756960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 213
Target Start/End: Complemental strand, 34732721 - 34732642
Alignment:
| Q |
135 |
aaaattgatagaatggaaaagctcgattataatgagtgtatgatacac-ttttagagtgatctttactaagctaactgat |
213 |
Q |
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|||||||||| |||| ||||| | |||||||||||||||| ||||||| ||||| ||||||| | |||||||| |||||| |
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| T |
34732721 |
aaaattgatataatgaaaaagtttgattataatgagtgtaggatacactttttatagtgatcctaactaagcttactgat |
34732642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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