View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21254_low_2 (Length: 449)
Name: NF21254_low_2
Description: NF21254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21254_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 20 - 441
Target Start/End: Original strand, 43527309 - 43527735
Alignment:
| Q |
20 |
ttagcgttctattgtttttaacttacatgttagctttagtatccaagaaagtattattagttgtggatttgtgactggtgact--gataagtccatgcat |
117 |
Q |
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| T |
43527309 |
ttagcattctattgtttttaacttacatgttagctttaggattcaagaaagtattattagttgtggatttgtgactggtgactgcgataagtccatgcat |
43527408 |
T |
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| Q |
118 |
gcatgctcgtaaaatgcc----aataagatgttgactatgaaattgttgctagtatgaatgatggaatggttggtgcaaagctaacaa------atatag |
207 |
Q |
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| T |
43527409 |
gcatgctcgtaaaatgccaattaataagatgttgactatgaaattgttg-tagtatgaatgatggaatggttggtgcaaagctaacaaatatatatatag |
43527507 |
T |
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| Q |
208 |
ttgagtttctgctatcaattaatatgatgtgggactcaaggactgaggtaacaaatctgtgacgtgtagtttcttatagaaaactgatatttgcttcgat |
307 |
Q |
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| T |
43527508 |
ttgagtttctgctatcaattaatatgatgtgggactcaaggactgaggtaacaaatctgtgacgtgtagtttcttatagaaaactgatatttgcttcgat |
43527607 |
T |
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| Q |
308 |
gtatcttgcatggtgagcca-catccaatccttttattttctataatcaagcatgtaaataaaatgtctgtttatccaaccagaagagctttatttatca |
406 |
Q |
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| T |
43527608 |
gtatctttcatggcgagccatcatccaatccttttattttct----------atgtaaataaaatgtctgtttatccaaccagaagagctttatttatca |
43527697 |
T |
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| Q |
407 |
catga---attattcatttgatagtggatgcctatgat |
441 |
Q |
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| T |
43527698 |
catgaattattattcatttgatagtggatgcctatgat |
43527735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 119 - 269
Target Start/End: Original strand, 43542722 - 43542874
Alignment:
| Q |
119 |
catgctcgtaaaatgccaat-----aagatgttgactatgaaattgttgctagtatgaatgatggaatggttggtgcaaagctaacaaatatagttga-g |
212 |
Q |
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| T |
43542722 |
catgctcgtaaaaagccaattgctgaagatgtagactatgaaattgttgctagtatgactgatggaatggttggtgcagagctagctaacatagttgagg |
43542821 |
T |
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| Q |
213 |
tttctgctatcaattaatatgatgtgggactcaaggactgaggtaacaaatctgtga |
269 |
Q |
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| T |
43542822 |
ttgctgctatc----aatatgatgcgggactcgaggaccgaggtaataaatccgtga |
43542874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 343 - 422
Target Start/End: Original strand, 43543075 - 43543154
Alignment:
| Q |
343 |
ttttctataatcaagcatgtaaataaaatgtctgtttatccaaccagaagagctttatttatcacatgaattattcattt |
422 |
Q |
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| T |
43543075 |
ttttctaaaatcaagcatgcaaataaaaggtctgtttatccaaccataagtgctttatttattgcatgaattattcattt |
43543154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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