View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21254_low_4 (Length: 350)

Name: NF21254_low_4
Description: NF21254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21254_low_4
NF21254_low_4
[»] chr2 (9 HSPs)
chr2 (75-339)||(33006689-33006957)
chr2 (75-201)||(10005197-10005324)
chr2 (72-201)||(39994621-39994752)
chr2 (75-166)||(17607636-17607729)
chr2 (78-146)||(26438353-26438422)
chr2 (83-197)||(32603273-32603388)
chr2 (75-148)||(3376137-3376211)
chr2 (229-273)||(12915641-12915684)
chr2 (219-279)||(26404865-26404925)
[»] chr5 (12 HSPs)
chr5 (75-318)||(1585300-1585547)
chr5 (72-318)||(17945872-17946123)
chr5 (72-318)||(17696031-17696281)
chr5 (75-318)||(15504726-15504973)
chr5 (72-142)||(21825215-21825287)
chr5 (72-148)||(40632645-40632722)
chr5 (75-273)||(23257042-23257242)
chr5 (72-272)||(24251171-24251381)
chr5 (75-150)||(26397286-26397363)
chr5 (136-192)||(6365763-6365819)
chr5 (78-148)||(7123934-7124006)
chr5 (75-138)||(37268346-37268410)
[»] chr7 (19 HSPs)
chr7 (72-320)||(38651121-38651374)
chr7 (17-273)||(43655998-43656261)
chr7 (72-318)||(32215577-32215827)
chr7 (75-219)||(20398797-20398942)
chr7 (72-219)||(21120517-21120665)
chr7 (75-188)||(3091947-3092061)
chr7 (133-219)||(27267608-27267694)
chr7 (133-201)||(27257498-27257566)
chr7 (108-271)||(14241176-14241340)
chr7 (72-166)||(42453622-42453718)
chr7 (75-142)||(45140133-45140201)
chr7 (72-166)||(17263376-17263471)
chr7 (243-318)||(27294075-27294150)
chr7 (72-170)||(29352705-29352802)
chr7 (75-146)||(38889930-38890002)
chr7 (109-171)||(27294233-27294295)
chr7 (75-138)||(22681441-22681505)
chr7 (75-148)||(40451840-40451915)
chr7 (75-138)||(41242163-41242227)
[»] chr8 (8 HSPs)
chr8 (72-288)||(9017920-9018147)
chr8 (72-318)||(21313625-21313875)
chr8 (72-219)||(39143242-39143393)
chr8 (75-207)||(8304609-8304746)
chr8 (72-151)||(29934695-29934775)
chr8 (219-278)||(15172681-15172740)
chr8 (72-165)||(15172800-15172895)
chr8 (219-270)||(15353231-15353282)
[»] chr4 (11 HSPs)
chr4 (75-303)||(52762773-52763006)
chr4 (72-207)||(17712670-17712809)
chr4 (72-201)||(13317637-13317768)
chr4 (75-270)||(22322413-22322611)
chr4 (72-148)||(135818-135895)
chr4 (75-166)||(42396697-42396789)
chr4 (110-166)||(36825815-36825871)
chr4 (72-166)||(26893331-26893426)
chr4 (223-270)||(37014063-37014110)
chr4 (219-273)||(14546497-14546551)
chr4 (72-139)||(53084599-53084667)
[»] chr1 (6 HSPs)
chr1 (75-320)||(16423196-16423445)
chr1 (229-272)||(33567306-33567349)
chr1 (219-273)||(8303901-8303955)
chr1 (72-142)||(7637635-7637706)
chr1 (75-166)||(10349521-10349614)
chr1 (113-166)||(34505219-34505272)
[»] chr6 (8 HSPs)
chr6 (72-318)||(2854109-2854362)
chr6 (219-280)||(29361521-29361582)
chr6 (72-142)||(18489745-18489816)
chr6 (72-142)||(16477623-16477695)
chr6 (78-146)||(25026737-25026806)
chr6 (72-144)||(31794670-31794743)
chr6 (219-279)||(12607398-12607458)
chr6 (219-270)||(31848197-31848248)
[»] chr3 (8 HSPs)
chr3 (72-201)||(21477738-21477868)
chr3 (75-273)||(16898516-16898718)
chr3 (72-318)||(12215347-12215600)
chr3 (72-166)||(7638882-7638978)
chr3 (219-318)||(19667628-19667727)
chr3 (72-166)||(7937443-7937538)
chr3 (219-318)||(31644100-31644199)
chr3 (72-138)||(41748782-41748849)
[»] scaffold0267 (1 HSPs)
scaffold0267 (75-201)||(10931-11060)
[»] scaffold0116 (1 HSPs)
scaffold0116 (72-318)||(42186-42439)
[»] scaffold0423 (1 HSPs)
scaffold0423 (72-318)||(10012-10263)
[»] scaffold0461 (2 HSPs)
scaffold0461 (219-272)||(2081-2134)
scaffold0461 (219-272)||(9017-9070)
[»] scaffold0074 (1 HSPs)
scaffold0074 (219-273)||(36189-36243)


Alignment Details
Target: chr2 (Bit Score: 175; Significance: 4e-94; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 75 - 339
Target Start/End: Original strand, 33006689 - 33006957
Alignment:
Q  75 aacaaattaaaatggaatatattattcaaaagcaa-gtgattcacctcgtataaggtgtgctaaagtgatgaatcgcctaatatctgttacaacaccacg 173  Q
    ||||||| |||||  ||||||||| ||||||| || ||||||||||||||| ||||||| ||||||||||||||| |||||||||| |||||||||||||    
T  33006689 aacaaatcaaaataaaatatattactcaaaagtaaagtgattcacctcgtacaaggtgtcctaaagtgatgaatcacctaatatctcttacaacaccacg 33006788  T
Q  174 acacctaataaagatgccaccacctaaaaataaagtatcaaacaa---acatgacactcatacaaaggagtagatgtctccaccaatcgtgaaaaccaaa 270  Q
    |||||||||||||||||||||||||||||||||||||||||||||   ||||| ||| ||||||||||||| ||||||||||||||||||||||||||||    
T  33006789 acacctaataaagatgccaccacctaaaaataaagtatcaaacaatttacatgccacccatacaaaggagtggatgtctccaccaatcgtgaaaaccaaa 33006888  T
Q  271 agcgataggctcaaagtttgaataaagccataaataagaatttaactttaagaatcaatacactttcat 339  Q
    | | |||||||||||||| ||| |||||||||||||||||||||| ||||||||| |||||||||||||    
T  33006889 aacaataggctcaaagttcgaagaaagccataaataagaatttaattttaagaatgaatacactttcat 33006957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 75 - 201
Target Start/End: Complemental strand, 10005324 - 10005197
Alignment:
Q  75 aacaaattaaaatggaatatattattcaaaagca-agtgattcacctcgtataaggtgtgctaaagtgatgaatcgcctaatatctgttacaacaccacg 173  Q
    ||||||| || ||| |||||||| |||||| ||| ||| ||||||| || | |||||||||||||||||||||||  |||||||||||||||||||||      
T  10005324 aacaaatcaatatgaaatatattgttcaaaggcagagttattcaccccgcacaaggtgtgctaaagtgatgaatcctctaatatctgttacaacaccaga 10005225  T
Q  174 acacctaataaagatgccaccacctaaa 201  Q
     ||||||||||||||| |||||||||||    
T  10005224 gcacctaataaagatgtcaccacctaaa 10005197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 72 - 201
Target Start/End: Complemental strand, 39994752 - 39994621
Alignment:
Q  72 ttgaacaaattaaaatggaatatattattcaaaagca-agtgattcacctcgtataaggtgtgctaaagtgatgaatcgcctaatatctgttacaacacc 170  Q
    |||||||||| |||||||||||||||| ||||||  | ||||||||||| |||| ||||||||||||| |||||||||  |||||||||||||||||| |    
T  39994752 ttgaacaaatcaaaatggaatatattactcaaaaatatagtgattcaccccgtacaaggtgtgctaaaatgatgaatcctctaatatctgttacaacatc 39994653  T
Q  171 acgacacct-aataaagatgccaccacctaaa 201  Q
    |   ||||| || ||||||| |||||||||||    
T  39994652 aaagcacctaaaaaaagatgtcaccacctaaa 39994621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 75 - 166
Target Start/End: Complemental strand, 17607729 - 17607636
Alignment:
Q  75 aacaaattaaaatggaatatattattcaaaagca-agtgattcacctcgtataaggtgtgctaaa-gtgatgaatcgcctaatatctgttacaa 166  Q
    ||||||| |||||||||||||||  ||||| | | |||||||||||||| | |||||||| |||| |||||||||| |  ||||||||||||||    
T  17607729 aacaaataaaaatggaatatattgctcaaacggacagtgattcacctcgcacaaggtgtgttaaaagtgatgaatcacacaatatctgttacaa 17607636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 26438422 - 26438353
Alignment:
Q  78 aaattaaaatggaatatattattcaaaagcaag-tgattcacctcgtataaggtgtgctaaagtgatgaa 146  Q
    |||||||| ||||||||||| |||||||| ||| |||||||||  | | |||||||||||||||||||||    
T  26438422 aaattaaattggaatatattgttcaaaagaaaggtgattcaccctgcacaaggtgtgctaaagtgatgaa 26438353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 83 - 197
Target Start/End: Complemental strand, 32603388 - 32603273
Alignment:
Q  83 aaaatggaatatattattcaaaagcaagtgattcacctcgtataaggtgtgctaaa-gtgatgaatcgcctaatatctgttacaacaccacgacacctaa 181  Q
    |||||| ||||||||  |||||   |||||||||||| | |||||| ||| ||||| |||||||||| || ||| |||||||||||||  |||||||||     
T  32603388 aaaatgaaatatatttctcaaagctaagtgattcaccccatataagatgtactaaaagtgatgaatcacccaatgtctgttacaacacaccgacacctat 32603289  T
Q  182 taaagatgccaccacc 197  Q
     |||| ||| ||||||    
T  32603288 caaaggtgcaaccacc 32603273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 148
Target Start/End: Complemental strand, 3376211 - 3376137
Alignment:
Q  75 aacaaattaaaatggaatatattattcaaaagca-agtgattcacctcgtataaggtgtgctaaagtgatgaatc 148  Q
    ||||||| ||||| |||||||||| ||||||| | ||||||||||| || | |||||||||||||  ||||||||    
T  3376211 aacaaatcaaaatagaatatattactcaaaagaagagtgattcaccccgcacaaggtgtgctaaaacgatgaatc 3376137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 273
Target Start/End: Complemental strand, 12915684 - 12915641
Alignment:
Q  229 catacaaaggagtagatgtctccaccaatcgtgaaaaccaaaagc 273  Q
    ||||||||| ||| |||||||||||||||| ||||||||||||||    
T  12915684 catacaaagaagt-gatgtctccaccaatcatgaaaaccaaaagc 12915641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 279
Target Start/End: Complemental strand, 26404925 - 26404865
Alignment:
Q  219 acatgacactcatacaaaggagtagatgtctccaccaatcgtgaaaaccaaaagcgatagg 279  Q
    ||||||||  |||||| || ||| | |||||||||||||| |||||||||||||| |||||    
T  26404925 acatgacatccatacagagaagtgggtgtctccaccaatcatgaaaaccaaaagcaatagg 26404865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 114; Significance: 9e-58; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 75 - 318
Target Start/End: Complemental strand, 1585547 - 1585300
Alignment:
Q  75 aacaaattaaaatggaatatattattcaaaagca-agtgattcacctcgtataaggtgtgctaaagtgatgaatcgcctaatatctgttacaacaccacg 173  Q
    ||||||| ||||| |||||||||  ||||||||| ||||||||||| |||| |||||||||||||||||||||||  ||||||| ||||||||||||||     
T  1585547 aacaaatcaaaattgaatatattgctcaaaagcagagtgattcaccccgtacaaggtgtgctaaagtgatgaatcctctaatatatgttacaacaccaca 1585448  T
Q  174 acacctaataaagatgccaccacctaaaaataaagtatcaaacaa---acatgacactcatacaaaggagtagatgtctccaccaatcgtgaaaaccaaa 270  Q
     ||||||||||||||||||||||||||| |||||| | |||||||   ||||||||| |||||||   ||  ||||||||||||||||||||||||||||    
T  1585447 tcacctaataaagatgccaccacctaaacataaagcaccaaacaaattacatgacacccatacaataaaggggatgtctccaccaatcgtgaaaaccaaa 1585348  T
Q  271 agcgataggctcaaagtttgaataaagccataaataagaatttaactt 318  Q
    ||| || ||||||||||| ||| | ||||| | | |||||||||||||    
T  1585347 agcaatgggctcaaagttcgaagatagccagagaaaagaatttaactt 1585300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 72 - 318
Target Start/End: Original strand, 17945872 - 17946123
Alignment:
Q  72 ttgaacaaattaaaatggaatatattattcaaaagca-agtgattcacctcgtataaggtgtgctaaagtgatgaatcgcctaatatctgttacaacacc 170  Q
    |||||||||| |||||||||||||||| |||||| || ||||||||||| || | ||||||||||||| |||||||||  ||||||||||||||||||||    
T  17945872 ttgaacaaatcaaaatggaatatattactcaaaaacagagtgattcaccccgcacaaggtgtgctaaaatgatgaatcctctaatatctgttacaacacc 17945971  T
Q  171 acgacacct--aataaagatgccaccacctaaaaataaagtatcaaaca--aacatgacactcatacaaaggagtagatgtctccaccaatcgtgaaaac 266  Q
    || ||||||  || ||||||||||||||||||| | ||||   ||||||   | || |||| ||||||||  ||  |||||||||||||||||| ||| |    
T  17945972 acaacacctaaaaaaaagatgccaccacctaaacaaaaaggtccaaacacttaaatcacacccatacaaaaaaggggatgtctccaccaatcgtaaaagc 17946071  T
Q  267 caaaagcgataggctcaaagtttgaataaagccataaataagaatttaactt 318  Q
    ||||||| ||||||||||  || ||| ||||||| | | |||||||||||||    
T  17946072 caaaagcaataggctcaatattcgaagaaagccagagaaaagaatttaactt 17946123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 72 - 318
Target Start/End: Original strand, 17696031 - 17696281
Alignment:
Q  72 ttgaacaaattaaaatggaatatattattcaaaagca-agtgattcacctcgtataaggtgtgctaaagtgatgaatcgcctaatatctgttacaacacc 170  Q
    |||||||||| ||||| |||||||||| |||||| || ||||||||| | || | ||||||||||||| ||||||||   ||||||||||||||||||||    
T  17696031 ttgaacaaatcaaaatagaatatattactcaaaaacagagtgattcatcccgcacaaggtgtgctaaaatgatgaattctctaatatctgttacaacacc 17696130  T
Q  171 acgacacct-aataaagatgccaccacctaaaaataaagtatcaaaca--aacatgacactcatacaaaggagtagatgtctccaccaatcgtgaaaacc 267  Q
    || |||||| || ||| ||||||||||||||| | ||||   ||||||   | || |||| ||||||||  ||  |||||||||||||||||| ||| ||    
T  17696131 acaacacctaaaaaaaaatgccaccacctaaacaaaaaggtccaaacacttaaatcacacccatacaaaaaaggggatgtctccaccaatcgtaaaagcc 17696230  T
Q  268 aaaagcgataggctcaaagtttgaataaagccataaataagaatttaactt 318  Q
    |||||| ||||||||||  || ||| ||||||| | | |||||||||||||    
T  17696231 aaaagcaataggctcaatattcgaagaaagccagagaaaagaatttaactt 17696281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 75 - 318
Target Start/End: Complemental strand, 15504973 - 15504726
Alignment:
Q  75 aacaaattaaaatggaatatattattcaaaagca-agtgattcacctcgtataaggtgtgctaaagtgatgaatcgcctaatatctgttacaacaccacg 173  Q
    ||||||| |||||||||||||||| | ||||  | ||||||||||| || | |||||||| |||| |||||||||  |||||||||||||||| |||||     
T  15504973 aacaaatcaaaatggaatatattacttaaaaatagagtgattcaccccgcacaaggtgtgttaaaatgatgaatcttctaatatctgttacaataccaca 15504874  T
Q  174 acacct-aataaagatgccaccacctaaaaataaagtatcaaaca--aacatgacactcatacaaaggagtagatgtctccaccaatcgtgaaaaccaaa 270  Q
    ||| || || ||||||||||||||||||| | ||||   ||||||   | || |||  |||||||   ||  |||||||||||||||||| |||||||||    
T  15504873 acatctaaaaaaagatgccaccacctaaacaaaaaggtccaaacacttaaatcacaaccatacaataaaggggatgtctccaccaatcgtaaaaaccaaa 15504774  T
Q  271 agcgataggctcaaagtttgaataaagccataaataagaatttaactt 318  Q
    ||| ||||||||||  || ||| ||||||| | | |||||||||||||    
T  15504773 agcaataggctcaatattcgaagaaagccagagaaaagaatttaactt 15504726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 142
Target Start/End: Complemental strand, 21825287 - 21825215
Alignment:
Q  72 ttgaacaaattaaaatggaatatattattcaaaagcaa--gtgattcacctcgtataaggtgtgctaaagtga 142  Q
    |||||||||| |||||||||||||||  ||||||| ||  |||||||||| || | |||||||||||||||||    
T  21825287 ttgaacaaatcaaaatggaatatattgctcaaaagaaaaggtgattcaccccgcacaaggtgtgctaaagtga 21825215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 148
Target Start/End: Original strand, 40632645 - 40632722
Alignment:
Q  72 ttgaacaaattaaaatggaatatattattcaaaagca-agtgattcacctcgtataaggtgtgctaaagtgatgaatc 148  Q
    |||||||||| |||||| ||||||||  ||||||| | ||||||||||| || |||||||||||||||  ||||||||    
T  40632645 ttgaacaaatcaaaatgaaatatattgctcaaaagaagagtgattcaccccgcataaggtgtgctaaaacgatgaatc 40632722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 273
Target Start/End: Complemental strand, 23257242 - 23257042
Alignment:
Q  75 aacaaattaaaatggaatatattattcaaaag-caagtgattcacctcgtataaggtgtgct-aaagtgatgaatcgcctaatatctgttacaacaccac 172  Q
    ||||||| ||||||||||||||| |||||| |  |||||||||||| || | |||||||||| |||  |||||||| || |||||||| ||||  | ||     
T  23257242 aacaaatcaaaatggaatatattgttcaaacgaaaagtgattcaccccgcacaaggtgtgctaaaaccgatgaatcacccaatatctgctacacaaacaa 23257143  T
Q  173 gacacctaa--taaagatgccaccacctaaaaataaagtatcaaacaaacatgacactcatacaaaggagtagatgtctccaccaatcgtgaaaaccaaa 270  Q
    | |||| ||   || |||||||||||| |||||||||  |  |||   ||||||||| |||||| || ||| | |||||||||||||| |||||| ||||    
T  23257142 ggcaccaaaccaaaggatgccaccaccaaaaaataaa--aagaaaattacatgacacccatacacagaagtgggtgtctccaccaatcatgaaaatcaaa 23257045  T
Q  271 agc 273  Q
    |||    
T  23257044 agc 23257042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 272
Target Start/End: Complemental strand, 24251381 - 24251171
Alignment:
Q  72 ttgaacaaattaaaatggaatatattattcaaaagc-aagtgattcacctcgtataaggtgtgctaaa-gtgatgaatcgcctaatatctgttacaacac 169  Q
    |||||||||  |||||  |||||||| ||||||||| |||||||||||| || | |||||||| |||| |||||||||| || ||| | ||||||| |||    
T  24251381 ttgaacaaaccaaaataaaatatattgttcaaaagctaagtgattcaccccgcacaaggtgtgttaaaagtgatgaatcacccaatgtatgttacatcac 24251282  T
Q  170 cacgacacctaataaagatgccaccacctaaaaataaagtatcaa-----acaa---acatgacactcatacaaaggagtagatgtctccaccaatcgtg 261  Q
     || |||||||  |||| |||  ||||| ||||| |||| || ||     ||||   ||||||||| ||||||||| |   | |||||||||||||| ||    
T  24251281 aacaacacctatcaaaggtgcatccaccaaaaaaaaaagaatgaacgaatacaacttacatgacacccatacaaagaatggggtgtctccaccaatcatg 24251182  T
Q  262 aaaaccaaaag 272  Q
    |||||||||||    
T  24251181 aaaaccaaaag 24251171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 150
Target Start/End: Original strand, 26397286 - 26397363
Alignment:
Q  75 aacaaattaaaatggaatatattattcaaaagca-agtgattcacctcgtataaggtgtgct-aaagtgatgaatcgc 150  Q
    ||||||| |||||||||||||||  ||||||| | ||||||||||| || | |||||||||| ||| |||||||||||    
T  26397286 aacaaatcaaaatggaatatattgctcaaaagaagagtgattcaccccgcacaaggtgtgctaaaaatgatgaatcgc 26397363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 192
Target Start/End: Original strand, 6365763 - 6365819
Alignment:
Q  136 aaagtgatgaatcgcctaatatctgttacaacaccacgacacctaataaagatgcca 192  Q
    ||||||||||||| ||||| || ||||||||||||  | |||||| |||||||||||    
T  6365763 aaagtgatgaatcacctaaaatttgttacaacaccgtggcacctagtaaagatgcca 6365819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 148
Target Start/End: Original strand, 7123934 - 7124006
Alignment:
Q  78 aaattaaaatggaatatattattcaaaagcaa-gtgattcacctcgtataaggtgtgct-aaagtgatgaatc 148  Q
    |||| |||||| ||||||||  |||||||||| |||||||| | || |||||||||||| |||||||||||||    
T  7123934 aaatcaaaatgaaatatatttctcaaaagcaaagtgattcaacccgcataaggtgtgctaaaagtgatgaatc 7124006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 138
Target Start/End: Complemental strand, 37268410 - 37268346
Alignment:
Q  75 aacaaattaaaatggaatatattattcaaaagcaa-gtgattcacctcgtataaggtgtgctaaa 138  Q
    ||||||| |||||||||||||||  ||||| | || |||||||||| |||| |||||||||||||    
T  37268410 aacaaatcaaaatggaatatattgctcaaaggaaaagtgattcaccccgtacaaggtgtgctaaa 37268346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 106; Significance: 5e-53; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 72 - 320
Target Start/End: Complemental strand, 38651374 - 38651121
Alignment:
Q  72 ttgaacaaattaaaatggaatatattattcaaaagca-agtgattcacctcgtataaggtgtgctaaagtgatgaatcgcctaatatctgttacaacacc 170  Q
    ||||| |||| ||||||||||||||| |||||||||| ||||||||||| || ||||||| ||||||||||||||||| |||||| ||||||||| || |    
T  38651374 ttgaagaaatcaaaatggaatatattgttcaaaagcatagtgattcaccccgcataaggtatgctaaagtgatgaatcacctaatgtctgttacatcatc 38651275  T
Q  171 acgacacctaataaagatgccaccac--ctaaaaataaagtatcaaacaaa---catgacactcatacaaaggagtagatgtctccaccaatcgtgaaaa 265  Q
    ||||||||||| | ||||| || |||  |||||||||||| | ||||||||   |||||||| |||||| |||||| |||||||||||||||||||||||    
T  38651274 acgacacctaaaacagatgtcatcacaactaaaaataaagca-caaacaaattacatgacacccatacataggagtggatgtctccaccaatcgtgaaaa 38651176  T
Q  266 ccaaaagcgataggctcaaagtttgaataaagccataaataagaatttaacttta 320  Q
     ||||||| |||||| ||||||||||| | ||||||||  | ||||||| |||||    
T  38651175 tcaaaagcaataggcacaaagtttgaagatagccataagaaggaatttagcttta 38651121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 17 - 273
Target Start/End: Complemental strand, 43656261 - 43655998
Alignment:
Q  17 tggtggatgatccaaagccttcacaaatatatgtttcaacgcgggannnnnnnngttg--aacaaattaaaatggaatatattattcaaaagcaagtgat 114  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||         ||   |||||||||||||||||||||||| ||||||| |||||||    
T  43656261 tggtggatgatccaaagccttcacaaatatatgtttcaacgtgggattttttttttttttaacaaattaaaatggaatatattactcaaaagtaagtgat 43656162  T
Q  115 tcacctcgtataaggtgtgctaaagtgatgaatcgcctaatatctgttacaacaccacgacacctaataaagatgccaccacc--taaaaataaagtatc 212  Q
    ||| | || | |||||||||||||||||||||||  |||||||||| |||||||||  | |||||||| ||||||||| ||||   |||||||||         
T  43656161 tcatcccgcacaaggtgtgctaaagtgatgaatcatctaatatctgatacaacaccgtggcacctaatgaagatgccaacaccaagaaaaataaaactca 43656062  T
Q  213 aaaca---aacatgacactcatacaaaggagtagatgtctccaccaatcgtgaaaaccaaaagc 273  Q
    |||||    ||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||    
T  43656061 aaacacattacatgacacccatacaaaggagtggatgtctccaccaatcatgaaaaccaaaagc 43655998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 72 - 318
Target Start/End: Original strand, 32215577 - 32215827
Alignment:
Q  72 ttgaacaaattaaaatggaatatattattcaaaagca-agtgattcacctcgtataaggtgtgctaaagtgatgaatcgcctaatatctgttacaacacc 170  Q
    |||||||||| |||||||||||||||| |||||| || ||||||||||| || | |||||||||||||||||||||||  ||||||||||||||||||||    
T  32215577 ttgaacaaatcaaaatggaatatattactcaaaaacagagtgattcaccccgcacaaggtgtgctaaagtgatgaatcctctaatatctgttacaacacc 32215676  T
Q  171 acgacacctaa-taaagatgccaccacctaaaaataaagtatcaaaca--aacatgacactcatacaaaggagtagatgtctccaccaatcgtgaaaacc 267  Q
    ||  |||||||  ||||||||||||||||||| | |||| | ||||||   | || |||| |||||||   ||  |||||||||||||||||| ||| ||    
T  32215677 acatcacctaacaaaagatgccaccacctaaacaaaaaggaccaaacacttaaatcacacccatacaataaaggggatgtctccaccaatcgtaaaagcc 32215776  T
Q  268 aaaagcgataggctcaaagtttgaataaagccataaataagaatttaactt 318  Q
     ||||| ||||||||||  || ||| ||||||| | | |||||||||||||    
T  32215777 gaaagcaataggctcaatattcgaagaaagccagagaaaagaatttaactt 32215827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 75 - 219
Target Start/End: Complemental strand, 20398942 - 20398797
Alignment:
Q  75 aacaaattaaaatggaatatattattcaaaagca-agtgattcacctcgtataaggtgtgctaaagtgatgaatcgcctaatatctgttacaacaccacg 173  Q
    ||||||| |||||| ||||||||  ||||||||| ||||||||||| |||| ||  |||||||||||| ||||||  ||||||| ||||||||||||||     
T  20398942 aacaaatcaaaatgaaatatattgctcaaaagcagagtgattcaccccgtacaaaatgtgctaaagtggtgaatcatctaatatttgttacaacaccaca 20398843  T
Q  174 acacctaataaagatgccaccacctaaaaataaagtatcaaacaaa 219  Q
    |||||||||||||||||||||||||||| |||||||| ||||||||    
T  20398842 acacctaataaagatgccaccacctaaacataaagtaccaaacaaa 20398797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 72 - 219
Target Start/End: Complemental strand, 21120665 - 21120517
Alignment:
Q  72 ttgaacaaattaaaatggaatatattattcaaaagcaa-gtgattcacctcgtataaggtgtgctaaagtgatgaatcgcctaatatctgttacaacacc 170  Q
    |||||||||| |||||||||||||||  |||||||||  |||||||| | || | |||||||||||||||||||||||  ||||||||||||||||||||    
T  21120665 ttgaacaaatcaaaatggaatatattgctcaaaagcagtgtgattcatcccgcacaaggtgtgctaaagtgatgaatcctctaatatctgttacaacacc 21120566  T
Q  171 acgacacctaataaagatgccaccacctaaaaataaagtatcaaacaaa 219  Q
    |   |||||||||||||||||||||| |||| |||||| | ||||||||    
T  21120565 aaagcacctaataaagatgccaccacataaacataaagcaccaaacaaa 21120517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 75 - 188
Target Start/End: Complemental strand, 3092061 - 3091947
Alignment:
Q  75 aacaaattaaaatggaatatattattcaaaagcaa-gtgattcacctcgtataaggtgtgctaaagtgatgaatcgcctaatatctgttacaacaccacg 173  Q
    ||||||| ||||| | |||||||  |||||||||| ||||||||||  | ||||||||| ||||||||||||||| |||||||||||||||||||||||     
T  3092061 aacaaatcaaaataggatatattgctcaaaagcaaagtgattcaccctgcataaggtgtactaaagtgatgaatcacctaatatctgttacaacaccaca 3091962  T
Q  174 acacctaataaagat 188  Q
    |||||||||||||||    
T  3091961 acacctaataaagat 3091947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 133 - 219
Target Start/End: Complemental strand, 27267694 - 27267608
Alignment:
Q  133 gctaaagtgatgaatcgcctaatatctgttacaacaccacgacacctaataaagatgccaccacctaaaaataaagtatcaaacaaa 219  Q
    ||||||||||||||||  |||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||| | ||||||||    
T  27267694 gctaaagtgatgaatcctctaatatctgttacaacaccacaacacctaacaaagatgccaccacctaaacataaagcaccaaacaaa 27267608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 133 - 201
Target Start/End: Complemental strand, 27257566 - 27257498
Alignment:
Q  133 gctaaagtgatgaatcgcctaatatctgttacaacaccacgacacctaataaagatgccaccacctaaa 201  Q
    ||||||||||||||||  ||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  27257566 gctaaagtgatgaatcctctagtatctgttacaacaccacaacacctaataaagatgccaccacctaaa 27257498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 108 - 271
Target Start/End: Complemental strand, 14241340 - 14241176
Alignment:
Q  108 aagtgattcacctcgtataaggtgtgctaaa-gtgatgaatcgcctaatatctgttacaacaccacgacacctaataaa--gatgccaccacctaaaaat 204  Q
    |||||||||||| || | ||| ||||||||| |||||||||| |  ||||||||||||||   || ||||||||||||   | |||||||||| |||||     
T  14241340 aagtgattcaccccgcacaagatgtgctaaaagtgatgaatcacacaatatctgttacaaagtcatgacacctaataagaggttgccaccaccgaaaaag 14241241  T
Q  205 aaagtatcaaacaaacatgacactcatacaaaggagtagatgtctccaccaatcgtgaaaaccaaaa 271  Q
    ||| || ||||   ||||| ||||||||||||  ||| |||||||||||||||| ||||||||||||    
T  14241240 aaa-taacaaaattacatg-cactcatacaaaaaagtggatgtctccaccaatcatgaaaaccaaaa 14241176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 72 - 166
Target Start/End: Complemental strand, 42453718 - 42453622
Alignment:
Q  72 ttgaacaaattaaaatggaatatattattcaaaagca-agtgattcacctcgtataaggtgtgct-aaagtgatgaatcgcctaatatctgttacaa 166  Q
    |||||||||| |||||||||||||||  ||||| | | ||||||||||| || |||||||||||| |||||||||||||    ||||||||||||||    
T  42453718 ttgaacaaataaaaatggaatatattgctcaaacgaacagtgattcaccccgcataaggtgtgctaaaagtgatgaatcatacaatatctgttacaa 42453622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 75 - 142
Target Start/End: Original strand, 45140133 - 45140201
Alignment:
Q  75 aacaaattaaaatggaatatattattcaaaagcaa-gtgattcacctcgtataaggtgtgctaaagtga 142  Q
    ||||||||||||||| ||||||| |||||||| || |||||||||| || | |||||||||||||||||    
T  45140133 aacaaattaaaatgggatatattgttcaaaagaaaggtgattcaccccgcacaaggtgtgctaaagtga 45140201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 72 - 166
Target Start/End: Complemental strand, 17263471 - 17263376
Alignment:
Q  72 ttgaacaaattaaaatggaatatattattcaaaagcaagtgattcacctcgtataaggtgtgct-aaagtgatgaatcgcctaatatctgttacaa 166  Q
    ||||| |||| ||||||||||||||| |||||    ||||||||||||  ||| |||||||||| |||| |||||||| || ||||||||||||||    
T  17263471 ttgaataaatcaaaatggaatatattgttcaacgaaaagtgattcaccctgtacaaggtgtgctaaaagagatgaatcacccaatatctgttacaa 17263376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 243 - 318
Target Start/End: Complemental strand, 27294150 - 27294075
Alignment:
Q  243 gatgtctccaccaatcgtgaaaaccaaaagcgataggctcaaagtttgaataaagccataaataagaatttaactt 318  Q
    |||||||||||||||||| ||| |||||||| ||||||||||  || ||| ||||||| | | |||||||||||||    
T  27294150 gatgtctccaccaatcgtaaaagccaaaagcaataggctcaatattcgaagaaagccagagaaaagaatttaactt 27294075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 170
Target Start/End: Complemental strand, 29352802 - 29352705
Alignment:
Q  72 ttgaacaaattaaaatggaatatattattcaaaagcaagtgattcacctcgtataaggtgtgctaaagtgatgaatcgcctaatatctgttacaacacc 170  Q
    |||||||||| |||||||||||||   || |||||  ||||||||| |  | | ||| |||||||||||||||||||  ||||||||||||||||||||    
T  29352802 ttgaacaaatcaaaatggaatataac-ttaaaaagagagtgattcatcctgcacaagatgtgctaaagtgatgaatcctctaatatctgttacaacacc 29352705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 146
Target Start/End: Complemental strand, 38890002 - 38889930
Alignment:
Q  75 aacaaattaaaatggaatatattattcaaaagcaag-tgattcacctcgtataaggtgtgctaaagtgatgaa 146  Q
    ||||||||||||| |||||||||  ||||||| ||| ||||||||| || | ||||||| |||||||||||||    
T  38890002 aacaaattaaaatagaatatattgctcaaaagaaaggtgattcaccccgcacaaggtgtactaaagtgatgaa 38889930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 171
Target Start/End: Complemental strand, 27294295 - 27294233
Alignment:
Q  109 agtgattcacctcgtataaggtgtgctaaagtgatgaatcgcctaatatctgttacaacacca 171  Q
    ||||||||||| |  | ||||||||||||| |||||||||  ||||||| |||||||||||||    
T  27294295 agtgattcaccccacacaaggtgtgctaaaatgatgaatcctctaatatttgttacaacacca 27294233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 138
Target Start/End: Original strand, 22681441 - 22681505
Alignment:
Q  75 aacaaattaaaatggaatatattattcaaaagca-agtgattcacctcgtataaggtgtgctaaa 138  Q
    ||||||| |||||||||||||||  ||||||| | ||||||||||| || | |||||||||||||    
T  22681441 aacaaatcaaaatggaatatattgctcaaaagaagagtgattcaccccgcacaaggtgtgctaaa 22681505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 148
Target Start/End: Original strand, 40451840 - 40451915
Alignment:
Q  75 aacaaattaaaatggaatatattattcaaaagca--agtgattcacctcgtataaggtgtgctaaagtgatgaatc 148  Q
    ||||||| |||||||| |||||| |||||| | |  |||||||||||||  |||| ||||||||||||||| ||||    
T  40451840 aacaaatcaaaatggattatattgttcaaacgaataagtgattcacctcaaataaagtgtgctaaagtgataaatc 40451915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 138
Target Start/End: Original strand, 41242163 - 41242227
Alignment:
Q  75 aacaaattaaaatggaatatattattcaaaag-caagtgattcacctcgtataaggtgtgctaaa 138  Q
    ||||||| |||||||||||||||| ||||| |  |||||||||||| || | |||||||||||||    
T  41242163 aacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccgcacaaggtgtgctaaa 41242227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 8e-49; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 72 - 288
Target Start/End: Complemental strand, 9018147 - 9017920
Alignment:
Q  72 ttgaacaaattaaaatggaatatattattcaaaagc-aagtg-----attcacctcgtataaggtgtgctaaagtgatgaatcgcctaatatctgttaca 165  Q
    ||||||||||||||||||||||||||  |||||||| |||||     |||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  9018147 ttgaacaaattaaaatggaatatattgctcaaaagcaaagtgattcaattcacctcgcataaggtgtgctaaagtgatgaatcacctaatatctgttaca 9018048  T
Q  166 acaccacgacacctaataaagatgccaccacctaaaaataaagtatcaaacaa---acatgacactcataca-----aaggagtagatgtctccaccaat 257  Q
    ||||||| | |||||||||||||||||||| |||||||||||| | |||||||   |||||| || ||||||     ||||||| ||||||||||||||     
T  9018047 acaccacaaaacctaataaagatgccaccatctaaaaataaagcaccaaacaaattacatgatacccatacaaagctaaggagtggatgtctccaccaa- 9017949  T
Q  258 cgtgaaaaccaaaagcgataggctcaaagtt 288  Q
      | |||||||||||| ||||||||||||||    
T  9017948 --taaaaaccaaaagcaataggctcaaagtt 9017920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 72 - 318
Target Start/End: Complemental strand, 21313875 - 21313625
Alignment:
Q  72 ttgaacaaattaaaatggaatatattattcaaaagca---agtgattcacctcgtataaggtgtgctaaagtgatgaatcgcctaatatctgttacaaca 168  Q
    |||||||||| |||||||||||||||| ||||||  |   | ||||||||| |||| ||||||||||||| |||||||||  |||  |||||||||||||    
T  21313875 ttgaacaaatcaaaatggaatatattactcaaaaaaacagaatgattcaccccgtacaaggtgtgctaaaatgatgaatcatctagaatctgttacaaca 21313776  T
Q  169 ccacgacacctaataaagatgccaccacctaaaaataaagtatcaaaca--aacatgacactcatacaaaggagtagatgtctccaccaatcgtgaaaac 266  Q
    ||||| ||||||| ||| ||||||||||||||| | ||||    |||||   | || || | ||||||||  ||  |||||||||||||||||| ||| |    
T  21313775 ccacggcacctaa-aaaaatgccaccacctaaacagaaaggtctaaacacttaaatcacccccatacaaaaaaggggatgtctccaccaatcgtaaaagc 21313677  T
Q  267 caaaagcgataggctcaaagtttgaataaagccataaataagaatttaactt 318  Q
    ||||||| ||||||||||  |||||| ||||||| | | |||||||||||||    
T  21313676 caaaagcaataggctcaatatttgaagaaagccagagaaaagaatttaactt 21313625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 72 - 219
Target Start/End: Complemental strand, 39143393 - 39143242
Alignment:
Q  72 ttgaacaaattaaaatggaatatattattcaaaagcaa-gtgattcacctcgtataaggtgtgctaaagtgatgaatcgcctaatatctgttacaacacc 170  Q
    |||||||||| || || | |||||||  |||||||||| |||||||||| || | |||||||| |||||||||||||| ||||||||||||||||| |||    
T  39143393 ttgaacaaatcaatataggatatattgctcaaaagcaaagtgattcaccccgcacaaggtgtggtaaagtgatgaatcacctaatatctgttacaatacc 39143294  T
Q  171 acgaca---cctaataaagatgccaccacctaaaaataaagtatcaaacaaa 219  Q
    || |||   ||||||||||||||||||| |||||||||||| | ||||||||    
T  39143293 acaacacctcctaataaagatgccaccatctaaaaataaagcaccaaacaaa 39143242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 75 - 207
Target Start/End: Original strand, 8304609 - 8304746
Alignment:
Q  75 aacaaattaaaatggaatatattattcaaaagcaagtg--attcacctcgtataaggtgtgctaaagtgatgaatcgcctaatatctgttacaacaccac 172  Q
    ||||||| |||||||||||||||| | ||||   || |  ||||||| || | || ||||||||||||||||||||  |||||||||||||||||||||     
T  8304609 aacaaatcaaaatggaatatattactaaaaaaacagcgtaattcaccccgcacaaagtgtgctaaagtgatgaatcctctaatatctgttacaacaccat 8304708  T
Q  173 gacacct---aataaagatgccaccacctaaaaataaa 207  Q
      |||||   |||||||||||||||||||||| |||||    
T  8304709 agcacctaaaaataaagatgccaccacctaaacataaa 8304746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 72 - 151
Target Start/End: Complemental strand, 29934775 - 29934695
Alignment:
Q  72 ttgaacaaattaaaatggaatatattattcaaaagcaag-tgattcacctcgtataaggtgtgctaaagtgatgaatcgcc 151  Q
    |||||||||| |||||||||||||||  |||||||  || ||||||||| || | |||||||||||| |||||||||||||    
T  29934775 ttgaacaaatcaaaatggaatatattgctcaaaagagaggtgattcaccccgcacaaggtgtgctaacgtgatgaatcgcc 29934695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 278
Target Start/End: Complemental strand, 15172740 - 15172681
Alignment:
Q  219 acatgacactcatacaaaggagtagatgtctccaccaatcgtgaaaaccaaaagcgatag 278  Q
    ||||||||| ||||||||||||| | |||||||| |||||||||||| ||||||| ||||    
T  15172740 acatgacacccatacaaaggagtgggtgtctccatcaatcgtgaaaaacaaaagcaatag 15172681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 72 - 165
Target Start/End: Complemental strand, 15172895 - 15172800
Alignment:
Q  72 ttgaacaaattaaaatggaatatattattcaaaagca-agtgattcacctcgtataaggtgtgct-aaagtgatgaatcgcctaatatctgttaca 165  Q
    ||||||||||||||||||||||||||  ||||| | | ||||||||||| || | ||  |||||| ||||||||||||| | ||||||||||||||    
T  15172895 ttgaacaaattaaaatggaatatatttctcaaacgaagagtgattcaccccgaacaatatgtgctaaaagtgatgaatcacataatatctgttaca 15172800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 219 - 270
Target Start/End: Complemental strand, 15353282 - 15353231
Alignment:
Q  219 acatgacactcatacaaaggagtagatgtctccaccaatcgtgaaaaccaaa 270  Q
    ||||||||||||||||||| ||| | | |||||||||||| |||||||||||    
T  15353282 acatgacactcatacaaagaagtgggtatctccaccaatcatgaaaaccaaa 15353231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 75 - 303
Target Start/End: Complemental strand, 52763006 - 52762773
Alignment:
Q  75 aacaaattaaaatggaatatattattcaaaagca-agtgattcacctcgtataaggtgtgctaaagtgatgaatcgcctaatatctgttacaacaccacg 173  Q
    |||||||||||||||||||||||  ||||||| | |||||||||||||||| |||||||| |||||||||||||| |||||| ||||| ||| || ||||    
T  52763006 aacaaattaaaatggaatatattgctcaaaagtatagtgattcacctcgtacaaggtgtgttaaagtgatgaatcacctaatgtctgtcacatcaacacg 52762907  T
Q  174 acacctaataaagatgccaccac--ctaaaaataaagtatcaaacaa---acatgacactcatacaaaggagtagatgtctccaccaatcgtgaaaacca 268  Q
     ||||||||| ||||| || |||  |||||||||||||| || ||||   ||||||||| || ||| | |||| |||||||||||||||| |||||||||    
T  52762906 gcacctaatacagatgtcatcaccactaaaaataaagta-cagacaaattacatgacacccaaacatatgagtggatgtctccaccaatcttgaaaacca 52762808  T
Q  269 aaagcgataggctcaaagtttgaataaagccataa 303  Q
    ||||| | |||| ||||||||||| | ||||||||    
T  52762807 aaagcaacaggcacaaagtttgaagatagccataa 52762773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 72 - 207
Target Start/End: Original strand, 17712670 - 17712809
Alignment:
Q  72 ttgaacaaattaaaatggaatatattattcaaaagca-agtgattcacctcgtataaggtgtgctaaagtgatgaatcgcctaatatctgttacaacacc 170  Q
    |||||||||| |||||||||||||||| ||| || || ||||||||||| || | |||||||||||||||||||||||  ||||||||||||||||||||    
T  17712670 ttgaacaaatcaaaatggaatatattactcagaaacagagtgattcaccccgcacaaggtgtgctaaagtgatgaatcctctaatatctgttacaacacc 17712769  T
Q  171 acgacacct---aataaagatgccaccacctaaaaataaa 207  Q
    ||  |||||   |||||||||||||||||||||| |||||    
T  17712770 acatcacctaaaaataaagatgccaccacctaaacataaa 17712809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 72 - 201
Target Start/End: Original strand, 13317637 - 13317768
Alignment:
Q  72 ttgaacaaattaaaatggaatatattattcaaaagca-agtgattcacctcgtataaggtgtgctaaagtgatgaatcgcctaatatctgttacaacacc 170  Q
    ||||||||||||||||||||||||||| |||| | || ||||||||||| |  | |||||||| |||| ||||||||   ||||||||||||||||||||    
T  13317637 ttgaacaaattaaaatggaatatattactcaagaacagagtgattcaccccacacaaggtgtgttaaaatgatgaattcgctaatatctgttacaacacc 13317736  T
Q  171 acgacacct-aataaagatgccaccacctaaa 201  Q
    ||  ||||| || |||||||||||||||||||    
T  13317737 acaccacctaaaaaaagatgccaccacctaaa 13317768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 75 - 270
Target Start/End: Original strand, 22322413 - 22322611
Alignment:
Q  75 aacaaattaaaatggaatatattattcaaaagcaa-gtgattcacctcgtataaggtgtgctaaag-tgatgaatcgcctaatatctgttacaa-cacca 171  Q
    ||||||| ||||||||||| ||| ||||||||||| |||||||| | || |||||||||||||||  ||||||||| |  ||  || ||||||| || ||    
T  22322413 aacaaatcaaaatggaataaattgttcaaaagcaaagtgattcatcccgcataaggtgtgctaaaaatgatgaatcactcaaagtcggttacaaacaaca 22322512  T
Q  172 cgacacctaataaagatgccaccacctaa-aaataaagtatcaaacaaacatgacactcatacaaaggagtagatgtctccaccaatcgtgaaaaccaaa 270  Q
     | ||||||| ||||||||||||||| || |||||||  |  |||   |||||| || ||||||||||||| | ||||||||||||||||||||||||||    
T  22322513 tg-cacctaacaaagatgccaccaccaaagaaataaataaggaaaattacatgatacccatacaaaggagtgggtgtctccaccaatcgtgaaaaccaaa 22322611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 72 - 148
Target Start/End: Original strand, 135818 - 135895
Alignment:
Q  72 ttgaacaaattaaaatggaatatattattcaaaagcaagtgattcacctcgtataaggtgtgctaa-agtgatgaatc 148  Q
    |||||||||| |||||||||||||||  ||||| | |||||||||||| |||| |||||||||||| |||||||||||    
T  135818 ttgaacaaatcaaaatggaatatattgctcaaacgaaagtgattcaccccgtacaaggtgtgctaagagtgatgaatc 135895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 75 - 166
Target Start/End: Original strand, 42396697 - 42396789
Alignment:
Q  75 aacaaattaaaatggaatatattattcaaaagcaa-gtgattcacctcgtataaggtgtgctaaagtgatgaatcgcctaatatctgttacaa 166  Q
    |||||||||||||||||||||||  ||||||| || |||||| ||| || | ||||| ||||||||||||||| | || ||| ||||||||||    
T  42396697 aacaaattaaaatggaatatattgctcaaaagaaaggtgatttaccccgcacaaggtatgctaaagtgatgaaacacccaatgtctgttacaa 42396789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 166
Target Start/End: Original strand, 36825815 - 36825871
Alignment:
Q  110 gtgattcacctcgtataaggtgtgctaaagtgatgaatcgcctaatatctgttacaa 166  Q
    |||||||||| ||||||||||||| |||||||||||||| || || |||||| ||||    
T  36825815 gtgattcaccccgtataaggtgtgttaaagtgatgaatcacccaaaatctgtgacaa 36825871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 72 - 166
Target Start/End: Complemental strand, 26893426 - 26893331
Alignment:
Q  72 ttgaacaaattaaaatggaatatattattcaaaagcaag-tgattcacctcgtataaggtgtgctaaagtgatgaatcgcctaatatctgttacaa 166  Q
    |||||||||| |||||||||| ||||  ||||||| ||| | |||||||  | | ||||||||||||||||||||||| || || |||| ||||||    
T  26893426 ttgaacaaatcaaaatggaatgtattgctcaaaagaaaggtaattcaccctgcacaaggtgtgctaaagtgatgaatcacccaacatctattacaa 26893331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 223 - 270
Target Start/End: Original strand, 37014063 - 37014110
Alignment:
Q  223 gacactcatacaaaggagtagatgtctccaccaatcgtgaaaaccaaa 270  Q
    ||||||||||||||| ||| | |||||||||||||| |||||||||||    
T  37014063 gacactcatacaaagaagtgggtgtctccaccaatcatgaaaaccaaa 37014110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 273
Target Start/End: Original strand, 14546497 - 14546551
Alignment:
Q  219 acatgacactcatacaaaggagtagatgtctccaccaatcgtgaaaaccaaaagc 273  Q
    |||||||| ||||| |||||||||||||| |||||||||| ||| ||| ||||||    
T  14546497 acatgacattcatataaaggagtagatgtttccaccaatcatgataacaaaaagc 14546551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 139
Target Start/End: Original strand, 53084599 - 53084667
Alignment:
Q  72 ttgaacaaattaaaatggaatatattattcaaaagcaa-gtgattcacctcgtataaggtgtgctaaag 139  Q
    |||||||||||||||||||||||| |  ||||||| || |||||| | |||||| ||||| ||||||||    
T  53084599 ttgaacaaattaaaatggaatataatgctcaaaagaaaggtgatttatctcgtacaaggtatgctaaag 53084667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 3e-42; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 75 - 320
Target Start/End: Original strand, 16423196 - 16423445
Alignment:
Q  75 aacaaattaaaatggaatatattattcaaaagcaa-gtgattcacctcgtataaggtgtgctaaagtgatgaatcgcctaatatctgttacaacaccacg 173  Q
    ||||||| ||||| | |||||||  |||||| ||| | |||||||| || | |||||||  |||| ||||||| | | |||||||||||||||||||||     
T  16423196 aacaaatcaaaataggatatattgctcaaaatcaaagcgattcaccccgcacaaggtgttttaaactgatgaaacacgtaatatctgttacaacaccaca 16423295  T
Q  174 acacctaataaagatgccaccacctaaaaataaagtatcaaacaa---acatgacactcatacaaaggagtagatgtctccaccaatcgtgaaaaccaaa 270  Q
     |||||||||||||||||||| ||||||||||||| | |||||||   ||||||||| ||||||||  ||| |||||||||||| |||||||||| ||||    
T  16423296 tcacctaataaagatgccaccgcctaaaaataaagcaccaaacaaattacatgacacccatacaaaaaagtggatgtctccaccgatcgtgaaaatcaaa 16423395  T
Q  271 agcgataggctcaaagtttgaataaagccataaataagaatttaacttta 320  Q
    ||| |||||||||||||| ||| | |||| ||   |||||||||||||||    
T  16423396 agcaataggctcaaagttcgaagatagccgtaggaaagaatttaacttta 16423445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 229 - 272
Target Start/End: Original strand, 33567306 - 33567349
Alignment:
Q  229 catacaaaggagtagatgtctccaccaatcgtgaaaaccaaaag 272  Q
    ||||||||||||| |||||||||||||||| |||||||||||||    
T  33567306 catacaaaggagtggatgtctccaccaatcatgaaaaccaaaag 33567349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 273
Target Start/End: Original strand, 8303901 - 8303955
Alignment:
Q  219 acatgacactcatacaaaggagtagatgtctccaccaatcgtgaaaaccaaaagc 273  Q
    ||||||||  |||| |||||||| |||||||||||||||| ||||||||||||||    
T  8303901 acatgacatccatataaaggagtggatgtctccaccaatcatgaaaaccaaaagc 8303955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 72 - 142
Target Start/End: Original strand, 7637635 - 7637706
Alignment:
Q  72 ttgaacaaattaaaatggaatatattattcaaaagcaag-tgattcacctcgtataaggtgtgctaaagtga 142  Q
    |||||||||| ||||||| |||||||  ||||||| ||| ||||||||| || | |||||||||||||||||    
T  7637635 ttgaacaaatcaaaatgggatatattgctcaaaagaaaggtgattcaccccgcacaaggtgtgctaaagtga 7637706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 166
Target Start/End: Complemental strand, 10349614 - 10349521
Alignment:
Q  75 aacaaattaaaatggaatatattattcaaaa-gcaagtgattcacctcgtataaggtgtgctaaa-gtgatgaatcgcctaatatctgttacaa 166  Q
    ||||||| |||||||||||||||  |||||  | ||||||||||||  | | ||||||||||||| |||||||||| |  ||||||||||||||    
T  10349614 aacaaatcaaaatggaatatattgctcaaactgaaagtgattcaccctgcacaaggtgtgctaaaagtgatgaatcacaaaatatctgttacaa 10349521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 166
Target Start/End: Complemental strand, 34505272 - 34505219
Alignment:
Q  113 attcacctcgtataaggtgtgctaaagtgatgaatcgcctaatatctgttacaa 166  Q
    ||||||| || ||||||||||||||| || |||||| |||||||||| ||||||    
T  34505272 attcaccccgcataaggtgtgctaaaatggtgaatcacctaatatctattacaa 34505219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 7e-34; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 72 - 318
Target Start/End: Original strand, 2854109 - 2854362
Alignment:
Q  72 ttgaacaaattaaaatggaatatattattcaaaagca-agtgattcacctcgtataaggtgtgctaaagtgatgaatcgcctaatatctgttacaacacc 170  Q
    ||||| |||| |||||||||||||||| |||||| || ||||||||||| || | ||||||||||||| |||||||||  |||||| |||||||||||||    
T  2854109 ttgaaaaaatcaaaatggaatatattactcaaaaacagagtgattcaccccgcacaaggtgtgctaaaatgatgaatcctctaatacctgttacaacacc 2854208  T
Q  171 acgacacctaat----aaagatgccaccacctaaaaataaagtatcaaaca--aacatgacactcatacaaaggagtagatgtctccaccaatcgtgaaa 264  Q
    || ||||||||     ||||||||||||||||||| | ||||   ||||||   | || |||| ||||||||  ||  |||||||||||||||||| |||    
T  2854209 acaacacctaaagaaaaaagatgccaccacctaaacaaaaaggtccaaacacttaaatcacacccatacaaaaaaggggatgtctccaccaatcgtaaaa 2854308  T
Q  265 accaaaagcgataggctcaaagtttgaataaagccataaataagaatttaactt 318  Q
     |||||||| ||||||||||  || ||| ||||||| | | |||||||||||||    
T  2854309 gccaaaagcaataggctcaatattcgaagaaagccagagaaaagaatttaactt 2854362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 219 - 280
Target Start/End: Complemental strand, 29361582 - 29361521
Alignment:
Q  219 acatgacactcatacaaaggagtagatgtctccaccaatcgtgaaaaccaaaagcgataggc 280  Q
    ||||||||| ||||||||||||| | ||||||||||||||||||||||||||||| ||||||    
T  29361582 acatgacacccatacaaaggagtgggtgtctccaccaatcgtgaaaaccaaaagcaataggc 29361521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 72 - 142
Target Start/End: Complemental strand, 18489816 - 18489745
Alignment:
Q  72 ttgaacaaattaaaatggaatatattattcaaaagcaa-gtgattcacctcgtataaggtgtgctaaagtga 142  Q
    |||||||||| |||||||||||||||  ||||||| || |||||||||| || | |||||||||||||||||    
T  18489816 ttgaacaaatcaaaatggaatatattgctcaaaagaaaggtgattcaccccgcacaaggtgtgctaaagtga 18489745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 142
Target Start/End: Original strand, 16477623 - 16477695
Alignment:
Q  72 ttgaacaaattaaaatggaatatattattcaaaagcaa--gtgattcacctcgtataaggtgtgctaaagtga 142  Q
    |||||||||| |||||||||||||||  ||||||| ||  |||||||||| || | |||||||||||||||||    
T  16477623 ttgaacaaatcaaaatggaatatattgctcaaaagaaaaggtgattcaccccgcacaaggtgtgctaaagtga 16477695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 78 - 146
Target Start/End: Original strand, 25026737 - 25026806
Alignment:
Q  78 aaattaaaatggaatatattattcaaaagc-aagtgattcacctcgtataaggtgtgctaaagtgatgaa 146  Q
    |||| |||||||||||||||| |||||||  |||| ||||||| || |||| ||||||||||||||||||    
T  25026737 aaatcaaaatggaatatattactcaaaagagaagtaattcaccccgcataaagtgtgctaaagtgatgaa 25026806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 144
Target Start/End: Original strand, 31794670 - 31794743
Alignment:
Q  72 ttgaacaaattaaaatggaatatattattcaaaagca-agtgattcacctcgtataaggtgtgctaaagtgatg 144  Q
    |||||||||| |||||||||||||||| |||||| || ||| ||||||| || | || ||||||||||||||||    
T  31794670 ttgaacaaatcaaaatggaatatattactcaaaaacagagtaattcaccccgcacaaagtgtgctaaagtgatg 31794743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 279
Target Start/End: Original strand, 12607398 - 12607458
Alignment:
Q  219 acatgacactcatacaaaggagtagatgtctccaccaatcgtgaaaaccaaaagcgatagg 279  Q
    ||||||||  |||||||| |||||||| |||||||||||| ||||||||||| || |||||    
T  12607398 acatgacatccatacaaaagagtagatatctccaccaatcatgaaaaccaaacgcaatagg 12607458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 219 - 270
Target Start/End: Original strand, 31848197 - 31848248
Alignment:
Q  219 acatgacactcatacaaaggagtagatgtctccaccaatcgtgaaaaccaaa 270  Q
    ||||||||| |||||||||||||   |||||||||||||| |||||||||||    
T  31848197 acatgacacccatacaaaggagtgagtgtctccaccaatcatgaaaaccaaa 31848248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 4e-32; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 72 - 201
Target Start/End: Original strand, 21477738 - 21477868
Alignment:
Q  72 ttgaacaaattaaaatggaatatattattcaaaagca-agtgattcacctcgtataaggtgtgctaaagtgatgaatcgcctaatatctgttacaacacc 170  Q
    |||||||||| |||||||||||||||| |||||  || ||||||||||| || | ||||||||||||| |||||||||  ||||||||||||||||||||    
T  21477738 ttgaacaaatcaaaatggaatatattactcaaagacagagtgattcaccccgcacaaggtgtgctaaaatgatgaatcctctaatatctgttacaacacc 21477837  T
Q  171 acgacacctaataaagatgccaccacctaaa 201  Q
    || ||||||||  ||||||||||||||||||    
T  21477838 acaacacctaaacaagatgccaccacctaaa 21477868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 75 - 273
Target Start/End: Complemental strand, 16898718 - 16898516
Alignment:
Q  75 aacaaattaaaatggaatatattattcaaaagcaa-gtgattcacctcgtataaggtgtgctaaagtgatgaatcgcctaatatctgttacaacaccacg 173  Q
    ||||||| ||||||  |||||||  |||||||||| |||||||||  || | ||  |||||||||||||||||||  ||||||| ||||||||||||||     
T  16898718 aacaaatcaaaatgagatatattgctcaaaagcaaagtgattcactccgcacaaaatgtgctaaagtgatgaatcatctaatatatgttacaacaccaca 16898619  T
Q  174 acacctaataaagatgccaccacctaaaaataaagtatcaaacaa---acatgacactcatacaaaggagtagatgtctccaccaatcgtgaaaaccaaa 270  Q
    |||||||||||||||||||| |||| || |||||||| |||||||   ||||||||  |||||||   ||   ||||||||| |||||||||||||||||    
T  16898618 acacctaataaagatgccactacctgaacataaagtaccaaacaaattacatgacatccatacaataaagggcatgtctccatcaatcgtgaaaaccaaa 16898519  T
Q  271 agc 273  Q
    |||    
T  16898518 agc 16898516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 72 - 318
Target Start/End: Complemental strand, 12215600 - 12215347
Alignment:
Q  72 ttgaacaaattaaaatggaatatattattcaaaagcaagtgattcacctcgtataaggtgtgctaaagtgatgaatcgcctaatatctgttacaacacca 171  Q
    |||||||||| ||| |||||||||||| ||||||   ||||||||||| || | ||||||||||||| |||||||||  ||||||| |||||||||||||    
T  12215600 ttgaacaaatcaaagtggaatatattactcaaaacagagtgattcaccccgcacaaggtgtgctaaaatgatgaatcctctaatatttgttacaacacca 12215501  T
Q  172 cgacacctaat----aaagatgccaccacctaaaaat-aaagtatcaaaca--aacatgacactcatacaaaggagtagatgtctccaccaatcgtgaaa 264  Q
    |  |||||||     |||||||||||| |||||| || |||||  ||||||   | || ||||  |||||||  ||  |||||||||||||||||| |||    
T  12215500 cagcacctaaagaaaaaagatgccaccgcctaaacataaaagttccaaacacttaaatcacaccaatacaaaaaaggggatgtctccaccaatcgtaaaa 12215401  T
Q  265 accaaaagcgataggctcaaagtttgaataaagccataaataagaatttaactt 318  Q
     |||||||| ||||||||||  || ||| |||||||   | |||||||||||||    
T  12215400 gccaaaagcaataggctcaatattcgaagaaagccagggaaaagaatttaactt 12215347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 72 - 166
Target Start/End: Original strand, 7638882 - 7638978
Alignment:
Q  72 ttgaacaaattaaaatggaatatattattcaaaag-caagtgattcacctcgtataaggtgtgct-aaagtgatgaatcgcctaatatctgttacaa 166  Q
    |||||||||| |||||||||||||||| ||||| |  |||||||||||| || ||||||||| || ||||||||||||| |   |||||||||||||    
T  7638882 ttgaacaaatcaaaatggaatatattactcaaacgaaaagtgattcaccccgcataaggtgtactaaaagtgatgaatcactagatatctgttacaa 7638978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 318
Target Start/End: Original strand, 19667628 - 19667727
Alignment:
Q  219 acatgacactcatacaaaggagtagatgtctccaccaatcgtgaaaaccaaaagcgataggctcaaagtttgaataaagccataaataagaatttaactt 318  Q
    ||||||||| ||||||||||||| | |||||||||||||| ||||| ||||| || |||||  ||||||| ||| | | ||||||| | ||||| |||||    
T  19667628 acatgacacccatacaaaggagtgggtgtctccaccaatcatgaaagccaaacgcaataggaacaaagttcgaagagatccataaaaaggaattcaactt 19667727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 72 - 166
Target Start/End: Complemental strand, 7937538 - 7937443
Alignment:
Q  72 ttgaacaaattaaaatggaatatattattcaaaagca-agtgattcacctcgtataaggtgtgctaaagtgatgaatcgcctaatatctgttacaa 166  Q
    |||||||||| |||||||||| ||||  ||||| ||| |||||||| ||  | | ||||||||||||||||||||||| || ||  ||||||||||    
T  7937538 ttgaacaaatcaaaatggaatctattgctcaaaggcagagtgattccccctgcacaaggtgtgctaaagtgatgaatcacccaaagtctgttacaa 7937443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 219 - 318
Target Start/End: Original strand, 31644100 - 31644199
Alignment:
Q  219 acatgacactcatacaaaggagtagatgtctccaccaatcgtgaaaaccaaaagcgataggctcaaagtttgaataaagccataaataagaatttaactt 318  Q
    ||||||||| |||||||| |||| | |||| ||||||||| ||||||||||| |  |||||  |||| || ||| ||||||||||| |||| || |||||    
T  31644100 acatgacacacatacaaacgagtgggtgtcgccaccaatcatgaaaaccaaacgttataggaacaaaattcgaagaaagccataaaaaagagttcaactt 31644199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 72 - 138
Target Start/End: Complemental strand, 41748849 - 41748782
Alignment:
Q  72 ttgaacaaattaaaatggaatatattattcaaaagcaa-gtgattcacctcgtataaggtgtgctaaa 138  Q
    |||||||||| ||||||||||||||| |||||||| || ||| |||||| | || |||||||||||||    
T  41748849 ttgaacaaatcaaaatggaatatattgttcaaaagaaaggtggttcaccccatacaaggtgtgctaaa 41748782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0267 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 75 - 201
Target Start/End: Complemental strand, 11060 - 10931
Alignment:
Q  75 aacaaattaaaatggaatatattattcaaaagca-agtgattcacctcgtataaggtgtgctaaagtgatgaatcgcctaatatctgttacaacaccacg 173  Q
    ||||||| |||||||||||||||| ||||||  | ||||||||||| || | |||||||| ||||||||||||||  ||||||||||||||||||||||     
T  11060 aacaaatcaaaatggaatatattactcaaaaagagagtgattcaccccgcacaaggtgtgttaaagtgatgaatcctctaatatctgttacaacaccaca 10961  T
Q  174 acacct--aataaagatgccaccacctaaa 201  Q
    ||||||  || |||||||||||||||||||    
T  10960 acacctaaaaaaaagatgccaccacctaaa 10931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 72 - 318
Target Start/End: Original strand, 42186 - 42439
Alignment:
Q  72 ttgaacaaattaaaatggaatatattattcaaaagcaa-gtgattcacctcgtataaggtgtgctaaagtgatgaatcgcctaatatctgttacaacacc 170  Q
    |||||||||| |||||| ||| ||||| |||||| ||| |||||||||| || | ||| ||||||||| |||||||||  ||||||||||||||||||||    
T  42186 ttgaacaaatcaaaatgaaatttattactcaaaaacaaagtgattcaccccgcacaagatgtgctaaaatgatgaatcctctaatatctgttacaacacc 42285  T
Q  171 acgacacctaat----aaagatgccaccacctaaaaat-aaagtatcaaaca--aacatgacactcatacaaaggagtagatgtctccaccaatcgtgaa 263  Q
    || ||||||||     ||||||||||||||||||| || |||||  ||||||   | || |||| ||||||||  ||  ||||||||||||||||   ||    
T  42286 acaacacctaaagaaaaaagatgccaccacctaaacataaaagttccaaacacttaaatcacacccatacaaaaaaggggatgtctccaccaatc-aaaa 42384  T
Q  264 aaccaaaagcgataggctcaaagtttgaataaagccataaataagaatttaactt 318  Q
    | |||||||| ||||||||||  || ||| ||||||| | | |||||||||||||    
T  42385 acccaaaagcaataggctcaatattcgaagaaagccagagaaaagaatttaactt 42439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0423 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0423
Description:

Target: scaffold0423; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 72 - 318
Target Start/End: Original strand, 10012 - 10263
Alignment:
Q  72 ttgaacaaattaaaatggaatatattattcaaaagcaag--tgattcacctcgtataaggtgtgctaaagtgatgaatcgcctaatatctgttacaacac 169  Q
    |||||||||| |||||||||||||||| ||||||   ||  ||||||||| || | ||||||||||||| |||||||||  |||  | ||||||||||||    
T  10012 ttgaacaaatcaaaatggaatatattactcaaaaaacagaatgattcaccccgcacaaggtgtgctaaaatgatgaatcatctagaaactgttacaacac 10111  T
Q  170 cacgacacct-aataaagatgccaccacctaaaaataaagtatcaaaca--aacatgacactcatacaaaggagtagatgtctccaccaatcgtgaaaac 266  Q
    |||| ||||| || ||| ||||||||||||||| | ||||    |||||   | || || | |||| |||  ||  |||||||||||||||||| ||| |    
T  10112 cacggcacctaaaaaaaaatgccaccacctaaacagaaaggtctaaacacttaaatcacccccataaaaaaaaggggatgtctccaccaatcgtaaaagc 10211  T
Q  267 caaaagcgataggctcaaagtttgaataaagccataaataagaatttaactt 318  Q
    ||||||| ||||||||||  |||||| ||||||| | | |||||||||||||    
T  10212 caaaagcaataggctcaatatttgaagaaagccagagaaaagaatttaactt 10263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 272
Target Start/End: Complemental strand, 2134 - 2081
Alignment:
Q  219 acatgacactcatacaaaggagtagatgtctccaccaatcgtgaaaaccaaaag 272  Q
    ||||||||||||||||||||||| | |||| ||||||||| |||||||||||||    
T  2134 acatgacactcatacaaaggagtgggtgtcaccaccaatcatgaaaaccaaaag 2081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 272
Target Start/End: Complemental strand, 9070 - 9017
Alignment:
Q  219 acatgacactcatacaaaggagtagatgtctccaccaatcgtgaaaaccaaaag 272  Q
    ||||||||||||||||||||||| | |||| ||||||||| |||||||||||||    
T  9070 acatgacactcatacaaaggagtgggtgtcaccaccaatcatgaaaaccaaaag 9017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 273
Target Start/End: Original strand, 36189 - 36243
Alignment:
Q  219 acatgacactcatacaaaggagtagatgtctccaccaatcgtgaaaaccaaaagc 273  Q
    ||||||||| |||||||||||||   |||||||||||||| ||||||||||||||    
T  36189 acatgacacccatacaaaggagtgagtgtctccaccaatcatgaaaaccaaaagc 36243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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