View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21254_low_9 (Length: 269)

Name: NF21254_low_9
Description: NF21254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21254_low_9
NF21254_low_9
[»] chr7 (16 HSPs)
chr7 (22-204)||(23844033-23844217)
chr7 (25-204)||(23840585-23840766)
chr7 (20-203)||(23861237-23861422)
chr7 (20-203)||(23864831-23865016)
chr7 (25-203)||(23817442-23817622)
chr7 (34-203)||(23857268-23857439)
chr7 (25-203)||(23791695-23791875)
chr7 (25-203)||(23802490-23802670)
chr7 (22-203)||(23838023-23838206)
chr7 (23-150)||(23797963-23798092)
chr7 (22-203)||(23852902-23853085)
chr7 (28-203)||(23807958-23808135)
chr7 (25-203)||(23823128-23823308)
chr7 (25-203)||(23828102-23828282)
chr7 (22-203)||(23849031-23849214)
chr7 (22-203)||(23855277-23855460)
[»] chr4 (1 HSPs)
chr4 (158-201)||(6273702-6273745)


Alignment Details
Target: chr7 (Bit Score: 138; Significance: 3e-72; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 22 - 204
Target Start/End: Complemental strand, 23844217 - 23844033
Alignment:
Q  22 ctcaaatacaacccagttcataagaaggttccagtttttgttcacaatgataagcctatatcagaatctc--gtgattcttgagtacattgatgaggttt 119  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||| |  ||||||||||||||||||||||||||||    
T  23844217 ctcaaatacaatccagttcataagaaggttccagtttttgttcacaatgagaaacctatatcagaatcccttgtgattcttgagtacattgatgaggttt 23844118  T
Q  120 ggaaacaaaatcccattttgccttctgatccacaccaaaaagccttggctcgattttggtcgaaattcatcgatgacaaggtaac 204  Q
    |||| ||||| || ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  23844117 ggaagcaaaaccctattttgccttctgatccacaccaaagagccttggctcgattttggtcaaaattcatcgatgacaaggtaac 23844033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 25 - 204
Target Start/End: Complemental strand, 23840766 - 23840585
Alignment:
Q  25 aaatacaacccagttcataagaaggttccagtttttgttcacaatgataagcctatatcagaatctc--gtgattcttgagtacattgatgaggtttgga 122  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||  |||||||||||||||||||||||||||||||    
T  23840766 aaatataatccagttcataagaaggttccagtttttgttcacaatgataagcccatttcagaatctcttgtgattcttgagtacattgatgaggtttgga 23840667  T
Q  123 aacaaaatcccattttgccttctgatccacaccaaaaagccttggctcgattttggtcgaaattcatcgatgacaaggtaac 204  Q
    | ||||| |||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  23840666 agcaaaaccccattttgccaactgatccacaccaaagagccttggctcgattttggtcgaaattcatcgatgacaaggtaac 23840585  T

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Target: chr7; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 20 - 203
Target Start/End: Complemental strand, 23861422 - 23861237
Alignment:
Q  20 tcctcaaatacaacccagttcataagaaggttccagtttttgttcacaatgataagcctatatcagaatctc--gtgattcttgagtacattgatgaggt 117  Q
    ||||||||||||| || |||||||||||  |||||||| ||||||||||||| ||||| ||||||||||| |  ||||||||||||||||||||||||||    
T  23861422 tcctcaaatacaatccggttcataagaaaattccagttcttgttcacaatgagaagccgatatcagaatcccttgtgattcttgagtacattgatgaggt 23861323  T
Q  118 ttggaaacaaaatcccattttgccttctgatccacaccaaaaagccttggctcgattttggtcgaaattcatcgatgacaaggtaa 203  Q
    |||||||||||||||||||||| | ||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  23861322 ttggaaacaaaatcccattttgtcgtctgatccataccaaaaatcattggctcgattttggtcgaaattcatcgatgacaaggtaa 23861237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 20 - 203
Target Start/End: Complemental strand, 23865016 - 23864831
Alignment:
Q  20 tcctcaaatacaacccagttcataagaaggttccagtttttgttcacaatgataagcctatatcagaatctc--gtgattcttgagtacattgatgaggt 117  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||| |||| |||||||||||    
T  23865016 tcctcatatacaatccagttcataagaaggttccagtttttgttcacaatgagaagcctatatcagaatctcttgtgattcttcagtatattgatgaggt 23864917  T
Q  118 ttggaaacaaaatcccattttgccttctgatccacaccaaaaagccttggctcgattttggtcgaaattcatcgatgacaaggtaa 203  Q
    ||||||||||||||||||||| || || |||||| |||||||| | ||||||||||||||||| || |||||||||||||||||||    
T  23864916 ttggaaacaaaatcccattttaccgtccgatccataccaaaaatcattggctcgattttggtccaagttcatcgatgacaaggtaa 23864831  T

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Target: chr7; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 25 - 203
Target Start/End: Complemental strand, 23817622 - 23817442
Alignment:
Q  25 aaatacaacccagttcataagaaggttccagtttttgttcacaatgataagcctatatcagaatctc--gtgattcttgagtacattgatgaggtttgga 122  Q
    ||||||||||| ||| ||||||||||||| |||||| |||| ||||||||||||||| |||| || |  ||||||||||| || |||||||||  |||||    
T  23817622 aaatacaaccctgtttataagaaggttcctgtttttattcataatgataagcctatagcagagtcacttgtgattcttgaatatattgatgagacttgga 23817523  T
Q  123 aacaaaatcccattttgccttctgatccacaccaaaaagccttggctcgattttggtcgaaattcatcgatgacaaggtaa 203  Q
    |||||||||| || ||||||||||||||| |||||| |||||||| |||||||||||| ||  |||| |||||||||||||    
T  23817522 aacaaaatccaatattgccttctgatccataccaaagagccttggttcgattttggtccaacctcatagatgacaaggtaa 23817442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 34 - 203
Target Start/End: Complemental strand, 23857439 - 23857268
Alignment:
Q  34 ccagttcataagaaggttccagtttttgttcacaatgataagcctatatcagaatctcgt--gattcttgagtacattgatgaggtttggaaacaaaatc 131  Q
    |||||| |||| ||| | |||||||||||||||||||| |||||||||||||| || | |  |||| ||||||| |||||||||  ||||||||||||||    
T  23857439 ccagtttataaaaagataccagtttttgttcacaatgaaaagcctatatcagagtcccttttgattattgagtatattgatgagacttggaaacaaaatc 23857340  T
Q  132 ccattttgccttctgatccacaccaaaaagccttggctcgattttggtcgaaattcatcgatgacaaggtaa 203  Q
    | || ||||||||||||||| |||||| ||||||||||||||||||||| || |||||||| ||||||||||    
T  23857339 ctatcttgccttctgatccataccaaagagccttggctcgattttggtctaacttcatcgacgacaaggtaa 23857268  T

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Target: chr7; HSP #7
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 25 - 203
Target Start/End: Complemental strand, 23791875 - 23791695
Alignment:
Q  25 aaatacaacccagttcataagaaggttccagtttttgttcacaatgataagcctatatcagaatctc--gtgattcttgagtacattgatgaggtttgga 122  Q
    ||||||||||| ||| ||||||||||||| || || ||||| ||||||||||| ||||||||||| |  |||||||||||||| |||||||||  |||||    
T  23791875 aaatacaaccctgtttataagaaggttcctgtgttagttcataatgataagcccatatcagaatcccttgtgattcttgagtatattgatgagacttgga 23791776  T
Q  123 aacaaaatcccattttgccttctgatccacaccaaaaagccttggctcgattttggtcgaaattcatcgatgacaaggtaa 203  Q
    |||||||||| || ||||||||||||||  || ||| |||||||||||| || ||| | || ||||| ||||| |||||||    
T  23791775 aacaaaatcctatcttgccttctgatccttacgaaagagccttggctcgtttctggaccaagttcatagatgataaggtaa 23791695  T

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Target: chr7; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 25 - 203
Target Start/End: Complemental strand, 23802670 - 23802490
Alignment:
Q  25 aaatacaacccagttcataagaaggttccagtttttgttcacaatgataagcctatatcagaatctc--gtgattcttgagtacattgatgaggtttgga 122  Q
    ||||||||||| ||| ||||||| ||||| |||||| |||| ||||||||||| |||||||| || |  ||||||||||| || |||||||||  |||||    
T  23802670 aaatacaaccctgtttataagaaagttcctgtttttattcataatgataagcccatatcagagtcccttgtgattcttgaatatattgatgagacttgga 23802571  T
Q  123 aacaaaatcccattttgccttctgatccacaccaaaaagccttggctcgattttggtcgaaattcatcgatgacaaggtaa 203  Q
    ||||||||||||| ||||||||||||||   | ||| |||||||||||| || ||||| || ||||| ||||| |||||||    
T  23802570 aacaaaatcccatattgccttctgatccttccaaaagagccttggctcgtttctggtccaatttcattgatgataaggtaa 23802490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 22 - 203
Target Start/End: Original strand, 23838023 - 23838206
Alignment:
Q  22 ctcaaatacaacccagttcataagaaggttccagtttttgttcacaatgataagcctatatcagaatctcgtg--attcttgagtacattgatgaggttt 119  Q
    ||||||||||| |||||| | | || |||||| ||||||||||| ||||  || || || ||||| |||||||  |||||||||||||| ||||||  ||    
T  23838023 ctcaaatacaatccagtttacaggatggttcctgtttttgttcataatggaaatcccatctcagagtctcgtgtgattcttgagtacatcgatgagactt 23838122  T
Q  120 ggaaacaaaatcccattttgccttctgatccacaccaaaaagccttggctcgattttggtcgaaattcatcgatgacaaggtaa 203  Q
    ||||||||||||| || ||||||||||||||  | |||| |||||||||||| || ||||| || ||||| |||||||||||||    
T  23838123 ggaaacaaaatcctatcttgccttctgatccttatcaaagagccttggctcgtttctggtctaagttcattgatgacaaggtaa 23838206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 23 - 150
Target Start/End: Complemental strand, 23798092 - 23797963
Alignment:
Q  23 tcaaatacaacccagttcataagaaggttccagtttttgttcacaatgataagcctatatcagaatctc--gtgattcttgagtacattgatgaggtttg 120  Q
    |||| |||||||| ||| ||||||||||||| || || ||||| ||||||||||||||| |||||||||  |||||| |||| || |||||||||  |||    
T  23798092 tcaattacaaccctgtttataagaaggttcctgtattagttcataatgataagcctatagcagaatctcttgtgattattgaatatattgatgagacttg 23797993  T
Q  121 gaaacaaaatcccattttgccttctgatcc 150  Q
    |||||||||||| || ||||||||||||||    
T  23797992 gaaacaaaatcctatcttgccttctgatcc 23797963  T

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Target: chr7; HSP #11
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 22 - 203
Target Start/End: Original strand, 23852902 - 23853085
Alignment:
Q  22 ctcaaatacaacccagttcataagaaggttccagtttttgttcacaatgataagcctatatcagaatctcgtg--attcttgagtacattgatgaggttt 119  Q
    ||||| ||||| |||||| | |||| |||||||||| ||||||| ||||  |||||||| |||||||| ||||  ||||||||||| |||||||||| ||    
T  23852902 ctcaattacaatccagtttacaagatggttccagttcttgttcataatgggaagcctatttcagaatcacgtgtgattcttgagtatattgatgaggctt 23853001  T
Q  120 ggaaacaaaatcccattttgccttctgatccacaccaaaaagccttggctcgattttggtcgaaattcatcgatgacaaggtaa 203  Q
    |||||||||| || || |||||   ||||||  | |||| ||||||||  || |||||||| || ||||| |||||||||||||    
T  23853002 ggaaacaaaaccctatcttgcccaatgatccttatcaaagagccttggaccgtttttggtctaagttcattgatgacaaggtaa 23853085  T

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Target: chr7; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 28 - 203
Target Start/End: Complemental strand, 23808135 - 23807958
Alignment:
Q  28 tacaacccagttcataagaaggttccagtttttgttcacaatgataagcctatatcagaatctc--gtgattcttgagtacattgatgaggtttggaaac 125  Q
    |||||||| ||| ||||||| ||||| ||||| ||| | ||||| ||||| || || ||||| |  |||||||||||||| |||||||||  ||||||||    
T  23808135 tacaaccctgtttataagaaagttcctgttttagtttataatgacaagcccatctctgaatcacttgtgattcttgagtatattgatgagacttggaaac 23808036  T
Q  126 aaaatcccattttgccttctgatccacaccaaaaagccttggctcgattttggtcgaaattcatcgatgacaaggtaa 203  Q
    |||| || || ||||||||||||||  | |||| |||| ||||||| || ||||| || ||||| |||||||||||||    
T  23808035 aaaaccctatcttgccttctgatccttatcaaagagccatggctcgtttctggtccaatttcattgatgacaaggtaa 23807958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 203
Target Start/End: Complemental strand, 23823308 - 23823128
Alignment:
Q  25 aaatacaacccagttcataagaaggttccagtttttgttcacaatgataagcctatatcagaatctc--gtgattcttgagtacattgatgaggtttgga 122  Q
    ||||||||||| ||| ||||||| ||||| || || ||||| |||||||| |||||| |||||||||  |||||| |||| || |||||||||  |||||    
T  23823308 aaatacaaccctgtttataagaaagttcctgtattagttcataatgataaacctatagcagaatctcttgtgattattgaatatattgatgagacttgga 23823209  T
Q  123 aacaaaatcccattttgccttctgatccacaccaaaaagccttggctcgattttggtcgaaattcatcgatgacaaggtaa 203  Q
    |||||||||| || ||||||||||||||  |  ||| ||||||||| || || ||||| || || || ||||| |||||||    
T  23823208 aacaaaatccaatcttgccttctgatccttataaaagagccttggcacgtttctggtccaagtttatagatgataaggtaa 23823128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 203
Target Start/End: Complemental strand, 23828282 - 23828102
Alignment:
Q  25 aaatacaacccagttcataagaaggttccagtttttgttcacaatgataagcctatatcagaatctc--gtgattcttgagtacattgatgaggtttgga 122  Q
    |||||||||||  || |||| |||||||| || || ||||| ||||||||||| ||||||||||| |  ||||||||||||||  |||||||   |||||    
T  23828282 aaatacaaccctatttataaaaaggttcctgtattagttcataatgataagcccatatcagaatcccttgtgattcttgagtatgttgatgaaacttgga 23828183  T
Q  123 aacaaaatcccattttgccttctgatccacaccaaaaagccttggctcgattttggtcgaaattcatcgatgacaaggtaa 203  Q
    | |||||||| || || |||||||||||  || ||| |||||||||||| || ||| | || ||||| ||||| |||||||    
T  23828182 agcaaaatcctatcttaccttctgatccttacaaaagagccttggctcgtttctggacaaagttcatagatgataaggtaa 23828102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 22 - 203
Target Start/End: Original strand, 23849031 - 23849214
Alignment:
Q  22 ctcaaatacaacccagttcataagaaggttccagtttttgttcacaatgataagcctatatcagaatctcgtg--attcttgagtacattgatgaggttt 119  Q
    |||||||| || |||||| ||| || |||||| ||| ||||||| ||||  || || ||||||||||||||||  ||| ||||||| ||||| |||| ||    
T  23849031 ctcaaatataatccagtttataggatggttcctgttcttgttcataatgggaatcccatatcagaatctcgtgtgattattgagtatattgacgaggctt 23849130  T
Q  120 ggaaacaaaatcccattttgccttctgatccacaccaaaaagccttggctcgattttggtcgaaattcatcgatgacaaggtaa 203  Q
    ||||||| || || || ||||||||||||||  || ||| ||| |||| ||| |||||||| || ||||| ||||| |||||||    
T  23849131 ggaaacagaaccctatcttgccttctgatccttacaaaagagctttggatcggttttggtcaaagttcattgatgaaaaggtaa 23849214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 22 - 203
Target Start/End: Original strand, 23855277 - 23855460
Alignment:
Q  22 ctcaaatacaacccagttcataagaaggttccagtttttgttcacaatgataagcctatatcagaatctcgtg--attcttgagtacattgatgaggttt 119  Q
    |||| |||||||||  || | |||| |||||| ||| ||||||||||||| |||||  | ||||| |||||||  ||||||||||| |||||||||  ||    
T  23855277 ctcagatacaaccctatttacaagatggttcctgttcttgttcacaatgagaagcccgtttcagagtctcgtgtgattcttgagtatattgatgagactt 23855376  T
Q  120 ggaaacaaaatcccattttgccttctgatccacaccaaaaagccttggctcgattttggtcgaaattcatcgatgacaaggtaa 203  Q
    |||||||||| || || ||||||||||||||  || ||| |||||||| ||| |||||| | || ||| | ||||| |||||||    
T  23855377 ggaaacaaaaccctatcttgccttctgatccttacaaaagagccttggatcgcttttgggccaagttcctagatgagaaggtaa 23855460  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 158 - 201
Target Start/End: Original strand, 6273702 - 6273745
Alignment:
Q  158 aaagccttggctcgattttggtcgaaattcatcgatgacaaggt 201  Q
    ||||||||||||||||||||||| | |||||| |||||||||||    
T  6273702 aaagccttggctcgattttggtctagattcattgatgacaaggt 6273745  T

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