View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21255_high_1 (Length: 874)
Name: NF21255_high_1
Description: NF21255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21255_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 600; Significance: 0; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 600; E-Value: 0
Query Start/End: Original strand, 18 - 729
Target Start/End: Original strand, 11329267 - 11329978
Alignment:
| Q |
18 |
cttttcagcttcgcttgagaatcttcctctttcattcaaagttaaaccctcttcagcagccagatcatcatattttggaagtattttcttttccgtggaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11329267 |
cttttcagcttcgcttgagaatcttcctctttcattcaaagttaaaccctcttcagcagccagatcatcatattttggaagtattttcttttccgtggaa |
11329366 |
T |
|
| Q |
118 |
gggacatcattgaacttatcgtcatatatgctgctagttttctttttcgcagctttataagcatcatcccgttgtttttgttctccgattcccacattct |
217 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||| |
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| T |
11329367 |
gggacatcattggacttatcgtcatatatgctgctagttttctttttcgcagctttataagtatcatcccgtcgtttttgttctcctattcccacattct |
11329466 |
T |
|
| Q |
218 |
caagcatatcagcgtcttcattaatatcaccatcaacaaaaataggctgatctctgtgagtcagaactacagaaccaccttccacaactttgtcaaggcc |
317 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||| |||| ||| | |||||||||||||| | |
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|
| T |
11329467 |
caagcatatcagcgtcttctttaatatcaccatcaacaattataggctgatctctgatagtcagaactacagtaccaactttcgcaactttgtcaaggtc |
11329566 |
T |
|
| Q |
318 |
attaagaactttcacccccgccaggtgatgagtcttatcctcgtcgtcacttccctctactgcaatgttgtcttgctcctcataaatctttgaaagatgc |
417 |
Q |
| |
|
|| || |||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| || ||| |
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|
| T |
11329567 |
atgaacaactttcagccctgccaggtgatgggtcttatcctcgtcgtcacttccctctactgcgatgttgtcttgctcctcaaaaatctttgagagctgc |
11329666 |
T |
|
| Q |
418 |
aatactctttccttttcaaacttacaactcttgttagcccgtgatgagatctcggaagtagcttcaaattgtttcgttgtccttgtttctttcatcttca |
517 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11329667 |
aatactctttccttttcaaacttacgactcttgttagcccatgatgagatctcggaagtagcttcaaattgtttcgttgtccttgtttctttcatcttca |
11329766 |
T |
|
| Q |
518 |
agctatgttcttttgatgacaagtatgctgatgtttcaccatcttcatcatcttgattgggttttgaagccttagcatgcttgccaacatcagcatctct |
617 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||| |
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|
| T |
11329767 |
agctatgttcttttgatgacaagtatgctgatgtttcaccatcttcatcatcttgattgagtattgaagccttagcatgcttgccaacatcatcatctct |
11329866 |
T |
|
| Q |
618 |
cttttcatggtagtttaatttatcatcaagattagacaattcaaaatcttcctcacgagcctttcgttttcctctatccattgacctatccttctcatgc |
717 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11329867 |
cttttcatggtagtttaatttatcatcaagattagacaattcaaaatcttcctcacgagcctttcgttttcctctatccattgacctatccttctcatgc |
11329966 |
T |
|
| Q |
718 |
tcatccctatta |
729 |
Q |
| |
|
|||||||||||| |
|
|
| T |
11329967 |
tcatccctatta |
11329978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 600; E-Value: 0
Query Start/End: Original strand, 18 - 729
Target Start/End: Original strand, 11487288 - 11487999
Alignment:
| Q |
18 |
cttttcagcttcgcttgagaatcttcctctttcattcaaagttaaaccctcttcagcagccagatcatcatattttggaagtattttcttttccgtggaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11487288 |
cttttcagcttcgcttgagaatcttcctctttcattcaaagttaaaccctcttcagcagccagatcatcatattttggaagtattttcttttccgtggaa |
11487387 |
T |
|
| Q |
118 |
gggacatcattgaacttatcgtcatatatgctgctagttttctttttcgcagctttataagcatcatcccgttgtttttgttctccgattcccacattct |
217 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||| |
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|
| T |
11487388 |
gggacatcattggacttatcgtcatatatgctgctagttttctttttcgcagctttataagtatcatcccgtcgtttttgttctcctattcccacattct |
11487487 |
T |
|
| Q |
218 |
caagcatatcagcgtcttcattaatatcaccatcaacaaaaataggctgatctctgtgagtcagaactacagaaccaccttccacaactttgtcaaggcc |
317 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||| |||| ||| | |||||||||||||| | |
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|
| T |
11487488 |
caagcatatcagcgtcttctttaatatcaccatcaacaattataggctgatctctgatagtcagaactacagtaccaactttcgcaactttgtcaaggtc |
11487587 |
T |
|
| Q |
318 |
attaagaactttcacccccgccaggtgatgagtcttatcctcgtcgtcacttccctctactgcaatgttgtcttgctcctcataaatctttgaaagatgc |
417 |
Q |
| |
|
|| || |||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| || ||| |
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|
| T |
11487588 |
atgaacaactttcagccctgccaggtgatgggtcttatcctcgtcgtcacttccctctactgcgatgttgtcttgctcctcaaaaatctttgagagctgc |
11487687 |
T |
|
| Q |
418 |
aatactctttccttttcaaacttacaactcttgttagcccgtgatgagatctcggaagtagcttcaaattgtttcgttgtccttgtttctttcatcttca |
517 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11487688 |
aatactctttccttttcaaacttacgactcttgttagcccatgatgagatctcggaagtagcttcaaattgtttcgttgtccttgtttctttcatcttca |
11487787 |
T |
|
| Q |
518 |
agctatgttcttttgatgacaagtatgctgatgtttcaccatcttcatcatcttgattgggttttgaagccttagcatgcttgccaacatcagcatctct |
617 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||| |
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|
| T |
11487788 |
agctatgttcttttgatgacaagtatgctgatgtttcaccatcttcatcatcttgattgagtattgaagccttagcatgcttgccaacatcatcatctct |
11487887 |
T |
|
| Q |
618 |
cttttcatggtagtttaatttatcatcaagattagacaattcaaaatcttcctcacgagcctttcgttttcctctatccattgacctatccttctcatgc |
717 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11487888 |
cttttcatggtagtttaatttatcatcaagattagacaattcaaaatcttcctcacgagcctttcgttttcctctatccattgacctatccttctcatgc |
11487987 |
T |
|
| Q |
718 |
tcatccctatta |
729 |
Q |
| |
|
|||||||||||| |
|
|
| T |
11487988 |
tcatccctatta |
11487999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 233 - 346
Target Start/End: Original strand, 37376564 - 37376677
Alignment:
| Q |
233 |
cttcattaatatcaccatcaacaaaaataggctgatctctgtgagtcagaactacagaaccaccttccacaactttgtcaaggccattaagaactttcac |
332 |
Q |
| |
|
|||||||||||||||||||| ||| || |||||||||||| |||||||||||||| |||||||||| |||||||||||||||||| ||||||||| || |
|
|
| T |
37376564 |
cttcattaatatcaccatcagcaagtatgggctgatctctgatagtcagaactacagtaccaccttccgcaactttgtcaaggccatgaagaactttgac |
37376663 |
T |
|
| Q |
333 |
ccccgccaggtgat |
346 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
37376664 |
ccccgccaggtgat |
37376677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 524 - 713
Target Start/End: Original strand, 37380799 - 37380988
Alignment:
| Q |
524 |
gttcttttgatgacaagtatgctgatgtttcaccatcttcatcatcttgattgggttttgaagccttagcatgcttgccaacatcagcatctctcttttc |
623 |
Q |
| |
|
|||||||||||||||||| |||||| || || || |||| ||||||||||||| ||||||||||||| ||||||| |||||||| ||||||||||||| |
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|
| T |
37380799 |
gttcttttgatgacaagtttgctgaagtctccccctctttatcatcttgattgagttttgaagccttttcatgcttaccaacatcctcatctctcttttc |
37380898 |
T |
|
| Q |
624 |
atggtagtttaatttatcatcaagattagacaattcaaaatcttcctcacgagcctttcgttttcctctatccattgacctatccttctc |
713 |
Q |
| |
|
|||||| | || | |||||||||||||| ||||| |||||||||| ||||||| | ||||||||||| | |||||||| ||||| |
|
|
| T |
37380899 |
atggtaatctactctatcatcaagattacctgattcataatcttcctcgtgagccttcctacttcctctatccctcgacctatctttctc |
37380988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 796 - 866
Target Start/End: Original strand, 11330045 - 11330115
Alignment:
| Q |
796 |
tcactatctttctccaactcccttttcttctcactgtccctatccttcttatctctatccctatgcttctc |
866 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
11330045 |
tcactatctttctccaactcccttttcttctcactgtccctatccttcttatctctatccctatgtttctc |
11330115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 796 - 866
Target Start/End: Original strand, 11488066 - 11488136
Alignment:
| Q |
796 |
tcactatctttctccaactcccttttcttctcactgtccctatccttcttatctctatccctatgcttctc |
866 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
11488066 |
tcactatctttctccaactcccttttcttctcactgtccctatccttcttatctctatccctatgtttctc |
11488136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 65 - 132
Target Start/End: Original strand, 37376204 - 37376271
Alignment:
| Q |
65 |
cctcttcagcagccagatcatcatattttggaagtattttcttttccgtggaagggacatcattgaac |
132 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||| ||||||||||| |
|
|
| T |
37376204 |
cctcttcagcagccggatcatcatattttggaagtattttcttttccgaggaggggtcatcattgaac |
37376271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 153 - 228
Target Start/End: Original strand, 37376384 - 37376459
Alignment:
| Q |
153 |
agttttctttttcgcagctttataagcatcatcccgttgtttttgttctccgattcccacattctcaagcatatca |
228 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| ||||||||||||| ||| ||||||| |||||||||||| |
|
|
| T |
37376384 |
agttttcttttttgcagctttataagcatcatcccgacgtttttgttctccaatttccacattttcaagcatatca |
37376459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 37376059 - 37376108
Alignment:
| Q |
18 |
cttttcagcttcgcttgagaatcttcctctttcattcaaagttaaaccct |
67 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
37376059 |
cttttcagcttcgcctgagaatcttcctctttcatccaaagttaaaccct |
37376108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 342 - 389
Target Start/End: Original strand, 37377410 - 37377457
Alignment:
| Q |
342 |
gtgatgagtcttatcctcgtcgtcacttccctctactgcaatgttgtc |
389 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
37377410 |
gtgatgtgtcgtatcctcgtcgtcacttccctcaactgcgatgttgtc |
37377457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 391 - 442
Target Start/End: Original strand, 37377569 - 37377620
Alignment:
| Q |
391 |
tgctcctcataaatctttgaaagatgcaatactctttccttttcaaacttac |
442 |
Q |
| |
|
||||||||| ||||||| || || |||||||||||||||||||||| ||||| |
|
|
| T |
37377569 |
tgctcctcaaaaatcttcgagagctgcaatactctttccttttcaagcttac |
37377620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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