View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21255_high_12 (Length: 386)
Name: NF21255_high_12
Description: NF21255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21255_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 17 - 371
Target Start/End: Original strand, 24519227 - 24519581
Alignment:
| Q |
17 |
cagagagaatacccttgagttttggagaggaaacttctctactagagagagattgaattttctggtcaagctctttgagggcttctctggccttctctgg |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24519227 |
cagagagaatacccttgagttttggagaggaaacttctctattagagagagattgaattttctggtcaagctctttgagggcttctctggccttctctgg |
24519326 |
T |
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| Q |
117 |
gtctatctcatattgcttggaatcttcctttaatgcatgaactatgcagcatgaattaaatgaagaagaatattttatgagcctcctctctttgaatatg |
216 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24519327 |
gtctatctcatattgctttgaatcttcctttaatgcatgaactatgcagcatgaattaaatgaagaagaatattttatgagcctcctctctttgaatatg |
24519426 |
T |
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| Q |
217 |
cctctatcatcattatgtagtaactgtttagaaagtgacgcaaataataatggtggctgcttatagatgctaagaggtttcatagagaataacatctgaa |
316 |
Q |
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||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24519427 |
cctctatcatcattatgtaataactgtttagaaagtgatgcaaataataatggtggctgcttatagatgctaagaggtttcatagagaataacatctgaa |
24519526 |
T |
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| Q |
317 |
tatgagtggaaattttaagacacgagaagcaatggaaatgaagataatgtttatg |
371 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24519527 |
tatgagtggaaattttaagacacgagaagcaatggaaatgaagataatgtttatg |
24519581 |
T |
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