View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21255_high_19 (Length: 316)
Name: NF21255_high_19
Description: NF21255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21255_high_19 |
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| [»] scaffold0653 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 8 - 290
Target Start/End: Complemental strand, 8315389 - 8315107
Alignment:
| Q |
8 |
aaattatactattctctatccatcaatctacaatctcttaatcgattttttatttcattcagacacataagcaattctatacaataaaatcaatcaaaag |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
8315389 |
aaattatactattctctatccatcaatctacaatctcttaatcgattttttatttcattcagacacataagcaattctatacaacaaaatcaatcaaaag |
8315290 |
T |
|
| Q |
108 |
cctaagaataataaaatcaacctaaaaccactcacatgatcaagcaaacccaacaaaaccataaacaaattgtacacaacaaaatcattcaaaagcacac |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
8315289 |
cctaagaataataaaatcaacctaaaaccactcacatgattaatcaaacccaaaaaaaccataaacaaattctacacaacaaaatcattcaaaagcacac |
8315190 |
T |
|
| Q |
208 |
taagaataaataatcaacctgaaagcaatagcaatatcattgccaaatttctcaagcgccttatccattatttcaagaggtga |
290 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
8315189 |
taagaataaataatcaacctgaaagcaatagcaatatcattgccaaacttctcaagcgccttgtccattatttcaagaggtga |
8315107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0653 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: scaffold0653
Description:
Target: scaffold0653; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 8 - 293
Target Start/End: Original strand, 7847 - 8132
Alignment:
| Q |
8 |
aaattatactattctctatccatcaatctacaatctcttaatcgattttttatttcattcagacacataagcaattctatacaataaaatcaatcaaaa- |
106 |
Q |
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||||||||||||||| | | ||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||| | |||||||||||||| |
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| T |
7847 |
aaattatactattctatgtacataaatctacaatctcttaatcgattttgtatttcattcagacacaaaagcaattttatacgacaaaatcaatcaaaaa |
7946 |
T |
|
| Q |
107 |
gccta---agaataataaaatcaacctaaaaccactcacatgatcaagcaaacccaacaaaaccataaacaaattgtacacaacaaaatcattcaaaagc |
203 |
Q |
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||||| | |||||| |||||||||| ||| ||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||| |
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| T |
7947 |
gcctattaaaaataatcaaatcaacctgaaa--------atgatcaagcaaacccaacaaaaccatgaacaaattctacataacaaaatcattcaaaagc |
8038 |
T |
|
| Q |
204 |
acactaagaataaataatcaac-----ctgaaagcaatagcaatatcattgccaaatttctcaagcgccttatccattatttcaagaggtgaagc |
293 |
Q |
| |
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|||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
8039 |
acactaagaataaataatcaactcaacccgaaagcaatagtaatatcattgccaaatttctcaagcgcc-tatccattatttcaagaggtgaagc |
8132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 8 - 293
Target Start/End: Original strand, 9325330 - 9325615
Alignment:
| Q |
8 |
aaattatactattctctatccatcaatctacaatctcttaatcgattttttatttcattcagacacataagcaattctatacaataaaatcaatcaaaa- |
106 |
Q |
| |
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||||||||||||||| | | ||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||| | |||||||||||||| |
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| T |
9325330 |
aaattatactattctatgtacataaatctacaatctcttaatcgattttgtatttcattcagacacaaaagcaattttatacgacaaaatcaatcaaaaa |
9325429 |
T |
|
| Q |
107 |
gccta---agaataataaaatcaacctaaaaccactcacatgatcaagcaaacccaacaaaaccataaacaaattgtacacaacaaaatcattcaaaagc |
203 |
Q |
| |
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||||| | |||||| |||||||||| ||| ||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||| |
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| T |
9325430 |
gcctattaaaaataatcaaatcaacctgaaa--------atgatcaagcaaacccaacaaaaccatgaacaaattctacataacaaaatcattcaaaagc |
9325521 |
T |
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| Q |
204 |
acactaagaataaataatcaac-----ctgaaagcaatagcaatatcattgccaaatttctcaagcgccttatccattatttcaagaggtgaagc |
293 |
Q |
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|||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
9325522 |
acactaagaataaataatcaactcaacccgaaagcaatagtaatatcattgccaaatttctcaagcgcc-tatccattatttcaagaggtgaagc |
9325615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 8 - 230
Target Start/End: Original strand, 2236349 - 2236576
Alignment:
| Q |
8 |
aaattatactattctctatccatcaatctacaatctcttaatcgattttttatttcattcagacacataagcaattctatacaataaaatcaatcaaaa- |
106 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||| | ||||| | |||||| || |||||||||||||||| |||||||||||||| |
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| T |
2236349 |
aaattatactattctctatacatcaatctacaatctcttaatcgattatgtattttactcagacccaaaagcaattctatacaacaaaatcaatcaaaaa |
2236448 |
T |
|
| Q |
107 |
gccta---agaataataaaatcaacctaaaaccactcacatgatcaagcaaacccaacaaaaccataaacaaattgtacacaacaaaatcattcaaaagc |
203 |
Q |
| |
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||||| |||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
2236449 |
gcctactaagaataatcaaatcaacctgaaaccactcgcatgatcaagcaaacccaacaaaaccataaacaaattttacacaacaaaatcattcagaagc |
2236548 |
T |
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| Q |
204 |
acactaagaat-aaataatcaacctgaa |
230 |
Q |
| |
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||||| ||||| |||||||||||||||| |
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| T |
2236549 |
acacttagaataaaataatcaacctgaa |
2236576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 190 - 293
Target Start/End: Original strand, 2236575 - 2236679
Alignment:
| Q |
190 |
aatcattcaaaagcacactaagaataaa-taatcaacctgaaagcaatagcaatatcattgccaaatttctcaagcgccttatccattatttcaagaggt |
288 |
Q |
| |
|
||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
2236575 |
aatcattcagaagcacacttagaataaaataatcaacctgaaagcaatagcaatatcattgccaaatttctcaagcgccctgtccattatttcaagaggt |
2236674 |
T |
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| Q |
289 |
gaagc |
293 |
Q |
| |
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||||| |
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| T |
2236675 |
gaagc |
2236679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 8 - 230
Target Start/End: Original strand, 34806310 - 34806537
Alignment:
| Q |
8 |
aaattatactattctctatccatcaatctacaatctcttaatcgattttttatttcattcagacacataagcaattctatacaataaaatcaatcaaaa- |
106 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||| |||| | ||||| | |||||| || ||||||||||||||| |||||||||||||| |
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| T |
34806310 |
aaattatactattctctatacatcaatctacaatctcttaattgattatgtattttactcagacccaaaagcaattctatacaccaaaatcaatcaaaaa |
34806409 |
T |
|
| Q |
107 |
gccta---agaataataaaatcaacctaaaaccactcacatgatcaagcaaacccaacaaaaccataaacaaattgtacacaacaaaatcattcaaaagc |
203 |
Q |
| |
|
||||| |||||||| |||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||| |
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|
| T |
34806410 |
gcctactaagaataatcaaatcaacctgaaaccactcgcatgatcaagcaaacccaacaaaacgataaacaaattctacacaacaaaatcattcagaagc |
34806509 |
T |
|
| Q |
204 |
acactaagaat-aaataatcaacctgaa |
230 |
Q |
| |
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||||| ||||| |||||||||||||||| |
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| T |
34806510 |
acacttagaataaaataatcaacctgaa |
34806537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 190 - 293
Target Start/End: Original strand, 34806536 - 34806640
Alignment:
| Q |
190 |
aatcattcaaaagcacactaagaataaa-taatcaacctgaaagcaatagcaatatcattgccaaatttctcaagcgccttatccattatttcaagaggt |
288 |
Q |
| |
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||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||| |||| |
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| T |
34806536 |
aatcattcagaagcacacttagaataaaataatcaacctgaaagcaatagcaatatcattgccaaatttcttaagcgccctgtccattatttcaacaggt |
34806635 |
T |
|
| Q |
289 |
gaagc |
293 |
Q |
| |
|
||||| |
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|
| T |
34806636 |
gaagc |
34806640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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