View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21255_high_20 (Length: 315)

Name: NF21255_high_20
Description: NF21255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21255_high_20
NF21255_high_20
[»] chr5 (4 HSPs)
chr5 (20-315)||(15402404-15402699)
chr5 (110-230)||(15400879-15400999)
chr5 (144-243)||(41377811-41377910)
chr5 (144-240)||(43281128-43281224)
[»] chr2 (1 HSPs)
chr2 (149-240)||(42975800-42975891)
[»] chr1 (3 HSPs)
chr1 (144-243)||(50204523-50204622)
chr1 (144-195)||(43866283-43866334)
chr1 (144-240)||(33966642-33966738)
[»] chr7 (4 HSPs)
chr7 (144-240)||(32368114-32368210)
chr7 (144-240)||(23636693-23636789)
chr7 (152-240)||(46082472-46082560)
chr7 (144-236)||(19781082-19781174)
[»] chr8 (2 HSPs)
chr8 (144-287)||(36881520-36881662)
chr8 (144-176)||(1468979-1469011)
[»] chr6 (4 HSPs)
chr6 (145-240)||(25101031-25101126)
chr6 (145-240)||(6539490-6539585)
chr6 (144-182)||(18133896-18133934)
chr6 (144-182)||(23890008-23890046)
[»] chr3 (3 HSPs)
chr3 (145-240)||(7227137-7227232)
chr3 (145-239)||(50063918-50064012)
chr3 (144-180)||(43061133-43061169)
[»] chr4 (2 HSPs)
chr4 (144-237)||(10601679-10601772)
chr4 (144-238)||(55911185-55911279)


Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 20 - 315
Target Start/End: Complemental strand, 15402699 - 15402404
Alignment:
Q  20 gaaatatcagtagagctataagcatatctttttaaggacaagatattcttttataactcacgctatcaaatggatccgacaacaactacaacaatcacgc 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15402699 gaaatatcagtagagctataagcatatctttttaaggacaagatattcttttataactcacgctatcaaatggatccgacaacaactacaacaatcacgc 15402600  T
Q  120 cttatctcacaaactgaggctggtttgtagtcaggatcgagtgctggttcgtaggattgtacggtcctatgtcccatggcatctcaatcgtacttcgact 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15402599 cttatctcacaaactgaggctggtttgtagtcaggatcgagtgctggttcgtaggattgtacggtcctatgtcccatggcatctcaatcgtacttcgact 15402500  T
Q  220 ttactcaggttcgtttttgctttgattctcctttgtttcatctgttcttactctattttctctgttttgtttgcttgtttcctttgcttctcctct 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  15402499 ttactcaggttcgtttttgctttgattctcctttgtttcatctgttcttactctattttctctgttttgtttgcttgtttcctctgcttttcctct 15402404  T

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Target: chr5; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 110 - 230
Target Start/End: Complemental strand, 15400999 - 15400879
Alignment:
Q  110 acaatcacgccttatctcacaaactgaggctggtttgtagtcaggatcgagtgctggttcgtaggattgtacggtcctatgtcccatggcatctcaatcg 209  Q
    |||||||  |||||||||||||||||||| ||| ||||| |||| |||||||||||||||||||||  ||||| ||||| |||||  |||| ||||||||    
T  15400999 acaatcataccttatctcacaaactgaggttggcttgtaatcagaatcgagtgctggttcgtaggaccgtacgatcctacgtcccgcggcacctcaatcg 15400900  T
Q  210 tacttcgactttactcaggtt 230  Q
    |||||||||||||||||||||    
T  15400899 tacttcgactttactcaggtt 15400879  T

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Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 144 - 243
Target Start/End: Complemental strand, 41377910 - 41377811
Alignment:
Q  144 ttgtagtcaggatcgagtgctggttcgtaggattgtacggtcctatgtcccatggcatctcaatcgtacttcgactttactcaggttcgtttttgctttg 243  Q
    ||||||||||||| ||| ||||||| ||||||| ||||| |||||  ||||| |||| ||||||||| |||||||||||||||||||||||| |||||||    
T  41377910 ttgtagtcaggattgagagctggtttgtaggatcgtacgatcctacttcccacggcacctcaatcgtgcttcgactttactcaggttcgtttctgctttg 41377811  T

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Target: chr5; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 144 - 240
Target Start/End: Complemental strand, 43281224 - 43281128
Alignment:
Q  144 ttgtagtcaggatcgagtgctggttcgtaggattgtacggtcctatgtcccatggcatctcaatcgtacttcgactttactcaggttcgtttttgct 240  Q
    ||||||||||||||  |||||||||| |||||| ||||| | |||  ||||| |||| ||||||| | |||||||||||||||||||||||||||||    
T  43281224 ttgtagtcaggatctcgtgctggttcataggatcgtacgattctacatcccacggcacctcaatcatgcttcgactttactcaggttcgtttttgct 43281128  T

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Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 149 - 240
Target Start/End: Complemental strand, 42975891 - 42975800
Alignment:
Q  149 gtcaggatcgagtgctggttcgtaggattgtacggtcctatgtcccatggcatctcaatcgtacttcgactttactcaggttcgtttttgct 240  Q
    |||||||| |||| |||||||||||||| ||||| ||||| |||||| ||||||||||||||||||| ||||||||||| ||||||||||||    
T  42975891 gtcaggatagagttctggttcgtaggatcgtacgatcctacgtcccacggcatctcaatcgtacttcaactttactcagcttcgtttttgct 42975800  T

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Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 144 - 243
Target Start/End: Original strand, 50204523 - 50204622
Alignment:
Q  144 ttgtagtcaggatcgagtgctggttcgtaggattgtacggtcctatgtcccatggcatctcaatcgtacttcgactttactcaggttcgtttttgctttg 243  Q
    ||||||||||||||||||||||||||||||||| ||| | ||||| || |||  ||| ||||||||| |||||||||||||||||||| ||||| |||||    
T  50204523 ttgtagtcaggatcgagtgctggttcgtaggatcgtatgatcctacgttccacagcacctcaatcgtgcttcgactttactcaggttcattttttctttg 50204622  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 144 - 195
Target Start/End: Original strand, 43866283 - 43866334
Alignment:
Q  144 ttgtagtcaggatcgagtgctggttcgtaggattgtacggtcctatgtccca 195  Q
    |||||||||||||||||||||||||||||||||  |||| ||||||| ||||    
T  43866283 ttgtagtcaggatcgagtgctggttcgtaggatcttacgatcctatggccca 43866334  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 240
Target Start/End: Original strand, 33966642 - 33966738
Alignment:
Q  144 ttgtagtcaggatcgagtgctggttcgtaggattgtacggtcctatgtcccatggcatctcaatcgtacttcgactttactcaggttcgtttttgct 240  Q
    |||||| |||||||||||||||| |||||||||  |||| | ||| || ||| |||| ||||| ||| ||| ||||| ||||  |||||||||||||    
T  33966642 ttgtagccaggatcgagtgctggctcgtaggatcttacgattctacgtgccacggcacctcaaccgtgctttgacttcactccagttcgtttttgct 33966738  T

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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 144 - 240
Target Start/End: Original strand, 32368114 - 32368210
Alignment:
Q  144 ttgtagtcaggatcgagtgctggttcgtaggattgtacggtcctatgtcccatggcatctcaatcgtacttcgactttactcaggttcgtttttgct 240  Q
    |||||||| || ||||||||||||||||||||| |||||  |||| |||||| ||||||||||  || ||||||||||||||| |||||||||||||    
T  32368114 ttgtagtccgggtcgagtgctggttcgtaggatcgtacgaccctacgtcccacggcatctcaactgtgcttcgactttactcatgttcgtttttgct 32368210  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 144 - 240
Target Start/End: Original strand, 23636693 - 23636789
Alignment:
Q  144 ttgtagtcaggatcgagtgctggttcgtaggattgtacggtcctatgtcccatggcatctcaatcgtacttcgactttactcaggttcgtttttgct 240  Q
    ||||||||||||||||||||||||||||||| | ||||  |   | |||| | |||| ||||||||| |||||||||||| |||||| |||||||||    
T  23636693 ttgtagtcaggatcgagtgctggttcgtaggttcgtacaatttgacgtccaacggcacctcaatcgtgcttcgactttacccaggtttgtttttgct 23636789  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 240
Target Start/End: Complemental strand, 46082560 - 46082472
Alignment:
Q  152 aggatcgagtgctggttcgtaggattgtacggtcctatgtcccatggcatctcaatcgtacttcgactttactcaggttcgtttttgct 240  Q
    |||||| |||||||| || |||||| ||||| | |||||||||   ||| ||||| ||| |||||||||||||| | ||||||||||||    
T  46082560 aggatccagtgctggctcataggatcgtacgattctatgtccctccgcacctcaaccgtgcttcgactttactccgattcgtttttgct 46082472  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 236
Target Start/End: Complemental strand, 19781174 - 19781082
Alignment:
Q  144 ttgtagtcaggatcgagtgctggttcgtaggattgtacggtcctatgtcccatggcatctcaatcgtacttcgactttactcaggttcgtttt 236  Q
    |||||||||||| |||||||||||| |||| || ||||| |||||  ||| | | || |||||| || || |||||||||||| | |||||||    
T  19781174 ttgtagtcaggaacgagtgctggtttgtagaatagtacgatcctacatccaacgacacctcaattgtgctccgactttactcaaggtcgtttt 19781082  T

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Target: chr8 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 144 - 287
Target Start/End: Original strand, 36881520 - 36881662
Alignment:
Q  144 ttgtagtcaggatcgagtgctggttcgtaggattgtacggtcctatgtcccatggcatctcaatcgtacttcgactttactcaggttcgtttttgctttg 243  Q
    ||||| ||||||| ||||||||||| ||||||| || || ||||| |||||| |||| |||||| || |||| |||||||||||||||||||||||| ||    
T  36881520 ttgtattcaggatagagtgctggtttgtaggatcgttcgatcctacgtcccaaggcacctcaattgtgcttcaactttactcaggttcgtttttgctctg 36881619  T
Q  244 attctcctttgtttcatctgttcttactctattttctctgtttt 287  Q
     || |||| |||||  |||||| ||  ||| |||||||||||||    
T  36881620 -ttttcctctgtttgctctgtttttcttctgttttctctgtttt 36881662  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 176
Target Start/End: Original strand, 1468979 - 1469011
Alignment:
Q  144 ttgtagtcaggatcgagtgctggttcgtaggat 176  Q
    |||||||||||||||||||||||||||||||||    
T  1468979 ttgtagtcaggatcgagtgctggttcgtaggat 1469011  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 145 - 240
Target Start/End: Complemental strand, 25101126 - 25101031
Alignment:
Q  145 tgtagtcaggatcgagtgctggttcgtaggattgtacggtcctatgtcccatggcatctcaatcgtacttcgactttactcaggttcgtttttgct 240  Q
    ||||| |||||||||||||||| |||||||||  |||| | |||||||||| |||| ||||| ||| ||||||||| |||| ||||||||||||||    
T  25101126 tgtagccaggatcgagtgctggctcgtaggatcttacgattctatgtcccacggcacctcaaccgtgcttcgacttcactccggttcgtttttgct 25101031  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 145 - 240
Target Start/End: Complemental strand, 6539585 - 6539490
Alignment:
Q  145 tgtagtcaggatcgagtgctggttcgtaggattgtacggtcctatgtcccatggcatctcaatcgtacttcgactttactcaggttcgtttttgct 240  Q
    |||||| ||||||||||||||| ||||||||| ||| | |||||   |||| | |||||||| ||| |||| ||||||||||||||| ||||||||    
T  6539585 tgtagtaaggatcgagtgctggatcgtaggatcgtatgatcctacaccccacgtcatctcaaccgtgcttcaactttactcaggttcatttttgct 6539490  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 182
Target Start/End: Complemental strand, 18133934 - 18133896
Alignment:
Q  144 ttgtagtcaggatcgagtgctggttcgtaggattgtacg 182  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  18133934 ttgtagtcaggatcgagtgctggctcgtaggattgtacg 18133896  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 182
Target Start/End: Complemental strand, 23890046 - 23890008
Alignment:
Q  144 ttgtagtcaggatcgagtgctggttcgtaggattgtacg 182  Q
    ||||||||||||||||||||||| ||||||||| |||||    
T  23890046 ttgtagtcaggatcgagtgctggctcgtaggatcgtacg 23890008  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 145 - 240
Target Start/End: Original strand, 7227137 - 7227232
Alignment:
Q  145 tgtagtcaggatcgagtgctggttcgtaggattgtacggtcctatgtcccatggcatctcaatcgtacttcgactttactcaggttcgtttttgct 240  Q
    |||||||||||| ||||||||| || |||||||||||| | ||| ||||||  ||| ||| | | | |||||||||||||| ||||||||||||||    
T  7227137 tgtagtcaggattgagtgctggctcttaggattgtacgattctacgtcccacagcacctcgaccatgcttcgactttactccggttcgtttttgct 7227232  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 239
Target Start/End: Original strand, 50063918 - 50064012
Alignment:
Q  145 tgtagtcaggatcgagtgctggttcgtaggattgtacggtcctatgtcccatggcatctcaatcgtacttcgactttactcaggttcgtttttgc 239  Q
    ||||| |||||||||||||||| |||||||||  |||| | ||| || ||| |||| ||||| ||  ||||||||| |||| |||||||||||||    
T  50063918 tgtagccaggatcgagtgctggctcgtaggatcttacgattctacgtgccacggcacctcaaccgagcttcgacttcactccggttcgtttttgc 50064012  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 180
Target Start/End: Original strand, 43061133 - 43061169
Alignment:
Q  144 ttgtagtcaggatcgagtgctggttcgtaggattgta 180  Q
    ||||||||||| |||||||||||| ||||||||||||    
T  43061133 ttgtagtcagggtcgagtgctggtacgtaggattgta 43061169  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 237
Target Start/End: Complemental strand, 10601772 - 10601679
Alignment:
Q  144 ttgtagtcaggatcgagtgctggttcgtaggattgtacggtcctatgtcccatggcatctcaatcgtacttcgactttactcaggttcgttttt 237  Q
    ||||||||| | ||||||| | |||||||||||  |||  ||||| |||||||| || ||||||| |  |||||||||||||| ||||||||||    
T  10601772 ttgtagtcaagttcgagtgtttgttcgtaggatcttacaatcctacgtcccatgacacctcaatcatgtttcgactttactcatgttcgttttt 10601679  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 144 - 238
Target Start/End: Original strand, 55911185 - 55911279
Alignment:
Q  144 ttgtagtcaggatcgagtgctggttcgtaggattgtacggtcctatgtcccatggcatctcaatcgtacttcgacttt-actcaggttcgtttttg 238  Q
    ||||||||| |||||||||||||||||||||||  |||| |||||  | ||| |||| ||||||||| ||| |||||| | ||| |||||||||||    
T  55911185 ttgtagtcaagatcgagtgctggttcgtaggatcatacgatcctacat-ccacggcacctcaatcgtgctttgactttaagtcaagttcgtttttg 55911279  T

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