View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21255_high_21 (Length: 293)
Name: NF21255_high_21
Description: NF21255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21255_high_21 |
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Alignment Details
Target: chr6 (Bit Score: 243; Significance: 1e-135; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 9 - 275
Target Start/End: Complemental strand, 24179208 - 24178942
Alignment:
| Q |
9 |
gaagaatatgactacaggaagggaggttgttttggtggcaccaccatctccggtgacttctccagcaacagtgggagtaaagagacgaaaccaaacgtta |
108 |
Q |
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| T |
24179208 |
gaagaaaatgacgacaggaagggaggttgctttggtggcaccaccatctccggtgacttctccggcaacagtgggggtaaagagacgaaaccaaacgtta |
24179109 |
T |
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| Q |
109 |
ttttcggcgttaacggtaacgtctttggtggaaacgccgttaacaggagtggcgttaggtgaggatttgagatcgaagaagttaaagagacgacggttga |
208 |
Q |
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| T |
24179108 |
ttttcggcgttaacggtaacgtctttggtggaaacgccgttaacaggagtggcgttaggtgaggatttgagatcgaagaagttaaagagacggcggttga |
24179009 |
T |
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| Q |
209 |
cggtaccgttagctcgacatgaagcgtccgttaaaactgtaagaagtgaaattgtagcgcggacctt |
275 |
Q |
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| T |
24179008 |
cggtaccgttagctcgacatgaagcgtccgttaaaactgtaagaagtgaaattgtagcgcggacctt |
24178942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 9 - 275
Target Start/End: Complemental strand, 24189014 - 24188748
Alignment:
| Q |
9 |
gaagaatatgactacaggaagggaggttgttttggtggcaccaccatctccggtgacttctccagcaacagtgggagtaaagagacgaaaccaaacgtta |
108 |
Q |
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| T |
24189014 |
gaagaaaatgacgacgggaagggaggtagttttggtggaaccaccatcttcggtgacttctccggcaacagttggagtaaagagacggaaccaaaggttg |
24188915 |
T |
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| Q |
109 |
ttttcggcgttaacggtaacgtctttggtggaaacgccgttaacaggagtggcgttaggtgaggatttgagatcgaagaagttaaagagacgacggttga |
208 |
Q |
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| T |
24188914 |
ttttcggagttaacggtgacgtctttagtggaaacgccgttaatcggagtggcgttaggtgaggatttgagatcgaagaagttaaagagacggcgattga |
24188815 |
T |
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| Q |
209 |
cggtaccgttagctcgacatgaagcgtccgttaaaactgtaagaagtgaaattgtagcgcggacctt |
275 |
Q |
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| T |
24188814 |
cggtgccgtttgcgcgacatgaagagtccgttaaaactgtaagaagtgaaattgtagcgcggacctt |
24188748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 9 - 269
Target Start/End: Complemental strand, 24168772 - 24168512
Alignment:
| Q |
9 |
gaagaatatgactacaggaagggaggttgttttggtggcaccaccatctccggtgacttctccagcaacagtgggagtaaagagacgaaaccaaacgtta |
108 |
Q |
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| T |
24168772 |
gaagaaaatgacaacgggaagggaggttgttttggttgcaccaccatctccgacgacttctccgccaacagtgggtgtaaagagacggaaccaaacgtta |
24168673 |
T |
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| Q |
109 |
ttttcggcgttaacggtaacgtctttggtggaaacgccgttaacaggagtggcgttaggtgaggatttgagatcgaagaagttaaagagacgacggttga |
208 |
Q |
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| T |
24168672 |
ttttcggagttaacggtaatgtctttgatggaaacaccgttaacgggagtggcattaggcgaggatttgcggatgaagaagttaaagagacggcggttga |
24168573 |
T |
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| Q |
209 |
cggtaccgttagctcgacatgaagcgtccgttaaaactgtaagaagtgaaattgtagcgcg |
269 |
Q |
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| T |
24168572 |
atgtgccgttagagcgacaacaagcgtcggttaaaaatgaaagaagtgaaatggtagcgcg |
24168512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 22 - 266
Target Start/End: Complemental strand, 24151932 - 24151676
Alignment:
| Q |
22 |
acaggaagggaggttgttttggtggcaccaccat------------ctccggtgacttctccagcaacagtgggagtaaagagacgaaaccaaacgttat |
109 |
Q |
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| T |
24151932 |
acaggaagggaggttgttttagtggcaccaccatctccagtaacctctccggcaacttctccggcgacggtgggagtgaagagacgaaaccaaacgttat |
24151833 |
T |
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| Q |
110 |
tttcggcgttaacggtaacgtctttggtggaaacgccgttaacaggagtggcgttaggtgaggatttgagatcgaagaagttaaagagacgacggttgac |
209 |
Q |
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| T |
24151832 |
tttcggtgttaacggtaatgtctttggtggaaacgccgttaacgggagtggagttaggtgaggcattgagactgaagaagttaaagagacggcggttgac |
24151733 |
T |
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| Q |
210 |
ggtaccgttagctcgacatgaagcgtccgttaaaactgtaagaagtgaaattgtagc |
266 |
Q |
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| T |
24151732 |
ggtgccgttagagcgagaagaagcgtcgaataaaagtgaaagaagtgaaatggtagc |
24151676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 79 - 220
Target Start/End: Complemental strand, 24112584 - 24112443
Alignment:
| Q |
79 |
gtgggagtaaagagacgaaaccaaacgttattttcggcgttaacggtaacgtctttggtggaaacgccgttaacaggagtggcgttaggtgaggatttga |
178 |
Q |
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| T |
24112584 |
gtgggtgtgaagagacggaaccaaacgttatcttctgcgttaacgataacgtctttggtggaaacgccgttaacagggatggcgttaggggaagatttgc |
24112485 |
T |
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| Q |
179 |
gatcgaagaagttaaagagacgacggttgacggtaccgttag |
220 |
Q |
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| T |
24112484 |
gatctaagaaattaagaaaacggcggttaacggtgccgttag |
24112443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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