View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21255_high_33 (Length: 239)
Name: NF21255_high_33
Description: NF21255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21255_high_33 |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 20 - 224
Target Start/End: Complemental strand, 9587290 - 9587086
Alignment:
| Q |
20 |
attacaacgttgacatctctcatttgttcgaacatccgtgttttcaatagtaatgacttgttcctcattgccaaatgtttcccttttcttgaaatacttg |
119 |
Q |
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| T |
9587290 |
attacaacgttgacatctctcatttgttcaaacatccgtgttttcaatagtaatgacttgttcctcattgccaaatgtttccctttacttgaaatacttg |
9587191 |
T |
|
| Q |
120 |
acctaagtgaccctttaatttgtgacgacagttgcaatagctttctccatggggttgagactctttcgttagcacttttcagactccgcaaaattaatct |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9587190 |
acctaagtgaccctttaatttgtgacgacagttgcaatagctttctccatggggttgagactctttcgttagcacttttcagactccgcaaaattaatct |
9587091 |
T |
|
| Q |
220 |
ctctg |
224 |
Q |
| |
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||||| |
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| T |
9587090 |
ctctg |
9587086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 9581719 - 9581516
Alignment:
| Q |
20 |
attacaacgttgacatctctcatttgttcgaacatccgtgttttcaatagtaatgacttgttcctcattgccaaatgtttcccttttcttgaaatacttg |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||| |
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| T |
9581719 |
attacaacgttgacatctctcatttgttcgaacatccgtattttcaatagtaatgacttgttcctcattgccgaatgttttcctttacttgaaatacttg |
9581620 |
T |
|
| Q |
120 |
acctaagtgaccctttaatttgtgacgacagttgcaatagctttctccatggggttgagactctttcgttagcacttttcagactccgcaaaattaatct |
219 |
Q |
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| T |
9581619 |
acctcaatggccctttattttgtatcgacggttgcaatagcattctccatggggtagagactctttcattagcattttccagactccgcaaaattaatct |
9581520 |
T |
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| Q |
220 |
ctct |
223 |
Q |
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|||| |
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| T |
9581519 |
ctct |
9581516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 119 - 219
Target Start/End: Complemental strand, 532753 - 532653
Alignment:
| Q |
119 |
gacctaagtgaccctttaatttgtgacgacagttgcaatagctttctccatggggttgagactctttcgttagcacttttcagactccgcaaaattaatc |
218 |
Q |
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||||||||| |||| ||| ||| |||| | ||| || ||||||||||||||| || ||||||||||| ||| ||||||||| ||||||||| |||||| |
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| T |
532753 |
gacctaagtaaccccttatcttgcgacggctgttacagtagctttctccatggtgtggagactctttcattatcacttttcaaactccgcaaggttaatc |
532654 |
T |
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| Q |
219 |
t |
219 |
Q |
| |
|
| |
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|
| T |
532653 |
t |
532653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 112
Target Start/End: Complemental strand, 9412110 - 9412061
Alignment:
| Q |
63 |
tcaatagtaatgacttgttcctcattgccaaatgtttcccttttcttgaa |
112 |
Q |
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||||||| ||||||||||| |||||||| ||||||||||||| |||||| |
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| T |
9412110 |
tcaatagcaatgacttgttactcattgctgaatgtttccctttgcttgaa |
9412061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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