View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21255_high_4 (Length: 565)

Name: NF21255_high_4
Description: NF21255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21255_high_4
NF21255_high_4
[»] chr2 (17 HSPs)
chr2 (18-262)||(31224050-31224292)
chr2 (413-555)||(15233757-15233899)
chr2 (412-555)||(43040982-43041125)
chr2 (412-555)||(35793040-35793182)
chr2 (412-555)||(41252416-41252559)
chr2 (412-549)||(31296084-31296221)
chr2 (412-554)||(44104683-44104832)
chr2 (412-555)||(41642892-41643038)
chr2 (426-555)||(31903513-31903641)
chr2 (338-412)||(31223934-31224008)
chr2 (412-480)||(10118660-10118728)
chr2 (426-548)||(21727684-21727809)
chr2 (412-444)||(10112340-10112372)
chr2 (412-444)||(15233999-15234031)
chr2 (412-480)||(36963132-36963200)
chr2 (412-444)||(43040850-43040882)
chr2 (412-443)||(44104547-44104578)
[»] chr7 (34 HSPs)
chr7 (412-555)||(17904164-17904307)
chr7 (412-555)||(26770180-26770323)
chr7 (412-555)||(29427297-29427440)
chr7 (412-555)||(37179465-37179607)
chr7 (412-555)||(46467468-46467611)
chr7 (412-555)||(6387825-6387968)
chr7 (412-555)||(6389733-6389876)
chr7 (419-555)||(9876271-9876407)
chr7 (412-555)||(29890959-29891102)
chr7 (412-555)||(41921987-41922130)
chr7 (412-555)||(4405110-4405253)
chr7 (415-534)||(31503091-31503210)
chr7 (412-520)||(19523863-19523973)
chr7 (414-510)||(9332364-9332460)
chr7 (426-553)||(33974506-33974636)
chr7 (412-555)||(12252070-12252216)
chr7 (431-555)||(9215595-9215722)
chr7 (426-555)||(46689878-46690011)
chr7 (412-526)||(29722956-29723070)
chr7 (412-526)||(43701552-43701666)
chr7 (412-555)||(31858225-31858370)
chr7 (412-526)||(33379130-33379243)
chr7 (426-488)||(49011058-49011120)
chr7 (412-556)||(33915718-33915863)
chr7 (469-555)||(48049057-48049146)
chr7 (431-555)||(5514797-5514923)
chr7 (412-444)||(4405353-4405385)
chr7 (412-444)||(17904407-17904439)
chr7 (412-444)||(29723381-29723413)
chr7 (412-444)||(29890827-29890859)
chr7 (412-444)||(37179332-37179364)
chr7 (412-443)||(46467336-46467367)
chr7 (501-555)||(22753201-22753257)
chr7 (416-444)||(6387697-6387725)
[»] chr8 (25 HSPs)
chr8 (412-555)||(33837862-33838005)
chr8 (412-555)||(2508929-2509072)
chr8 (412-555)||(28378948-28379091)
chr8 (412-555)||(45334409-45334552)
chr8 (416-541)||(13469652-13469777)
chr8 (412-555)||(25106212-25106355)
chr8 (412-555)||(9739986-9740129)
chr8 (416-555)||(38495605-38495744)
chr8 (18-191)||(33627763-33627937)
chr8 (412-534)||(27793345-27793467)
chr8 (455-555)||(2626371-2626472)
chr8 (412-555)||(32183614-32183758)
chr8 (18-187)||(41289731-41289900)
chr8 (412-480)||(27024434-27024502)
chr8 (412-478)||(25978969-25979035)
chr8 (412-526)||(8235163-8235276)
chr8 (446-526)||(3203413-3203492)
chr8 (426-473)||(2626667-2626714)
chr8 (412-444)||(25106455-25106487)
chr8 (412-444)||(27027655-27027687)
chr8 (412-444)||(28379191-28379223)
chr8 (412-444)||(33837730-33837762)
chr8 (412-444)||(45334277-45334309)
chr8 (412-443)||(9740231-9740262)
chr8 (412-444)||(38495473-38495505)
[»] chr6 (16 HSPs)
chr6 (412-555)||(27312249-27312392)
chr6 (412-555)||(32274435-32274578)
chr6 (413-555)||(8504835-8504977)
chr6 (418-555)||(5003889-5004026)
chr6 (18-236)||(698708-698924)
chr6 (412-555)||(29452675-29452819)
chr6 (412-513)||(12174701-12174802)
chr6 (412-555)||(31171123-31171266)
chr6 (412-526)||(18741948-18742062)
chr6 (472-555)||(2543142-2543225)
chr6 (412-555)||(7156370-7156501)
chr6 (412-459)||(29302500-29302547)
chr6 (412-444)||(8504734-8504766)
chr6 (412-444)||(27312115-27312147)
chr6 (412-444)||(2543325-2543357)
chr6 (412-444)||(32274678-32274710)
[»] chr5 (24 HSPs)
chr5 (412-555)||(12399079-12399222)
chr5 (412-555)||(34208539-34208682)
chr5 (412-555)||(29874955-29875098)
chr5 (412-555)||(23090299-23090442)
chr5 (406-555)||(4145689-4145838)
chr5 (412-555)||(4695295-4695438)
chr5 (412-550)||(3077598-3077736)
chr5 (426-545)||(42757953-42758072)
chr5 (476-555)||(22646042-22646121)
chr5 (426-526)||(12096365-12096466)
chr5 (412-526)||(41610579-41610693)
chr5 (412-480)||(42793041-42793109)
chr5 (414-478)||(4434783-4434847)
chr5 (432-555)||(22528023-22528149)
chr5 (412-444)||(12398947-12398979)
chr5 (412-444)||(29875198-29875230)
chr5 (412-444)||(42757806-42757838)
chr5 (412-444)||(42793562-42793594)
chr5 (412-443)||(23090543-23090574)
chr5 (412-443)||(41610374-41610405)
chr5 (426-460)||(594328-594362)
chr5 (414-480)||(8718028-8718094)
chr5 (412-522)||(19574687-19574795)
chr5 (412-444)||(34208782-34208814)
[»] chr3 (35 HSPs)
chr3 (412-555)||(18996968-18997111)
chr3 (412-555)||(18999507-18999650)
chr3 (412-555)||(29371671-29371814)
chr3 (412-555)||(32677610-32677753)
chr3 (412-555)||(39528750-39528893)
chr3 (412-554)||(1352130-1352272)
chr3 (412-555)||(41349504-41349647)
chr3 (412-555)||(28228437-28228580)
chr3 (416-555)||(39807112-39807251)
chr3 (412-555)||(55365909-55366052)
chr3 (414-555)||(21974152-21974293)
chr3 (414-555)||(21996583-21996724)
chr3 (420-555)||(36737967-36738102)
chr3 (417-555)||(38855323-38855461)
chr3 (414-555)||(22157261-22157402)
chr3 (418-546)||(29014832-29014960)
chr3 (426-555)||(39518422-39518551)
chr3 (412-555)||(32839950-32840092)
chr3 (426-555)||(49040977-49041107)
chr3 (416-480)||(49319352-49319416)
chr3 (412-444)||(1351997-1352029)
chr3 (412-444)||(18997211-18997243)
chr3 (412-444)||(18999750-18999782)
chr3 (412-444)||(29014691-29014723)
chr3 (412-444)||(36737835-36737867)
chr3 (412-444)||(38855561-38855593)
chr3 (412-444)||(39518651-39518683)
chr3 (412-444)||(39528993-39529025)
chr3 (412-444)||(41349372-41349404)
chr3 (436-523)||(837370-837455)
chr3 (412-443)||(46878980-46879011)
chr3 (412-444)||(29371539-29371571)
chr3 (412-444)||(32677478-32677510)
chr3 (417-517)||(34667662-34667762)
chr3 (412-444)||(39806980-39807012)
[»] chr1 (29 HSPs)
chr1 (412-555)||(47669120-47669263)
chr1 (412-554)||(46220260-46220402)
chr1 (412-555)||(10737834-10737977)
chr1 (412-549)||(4817270-4817407)
chr1 (412-555)||(9831504-9831647)
chr1 (412-555)||(18126852-18126994)
chr1 (412-555)||(3384728-3384869)
chr1 (412-547)||(4055485-4055620)
chr1 (412-555)||(48564819-48564961)
chr1 (426-550)||(8889457-8889581)
chr1 (412-555)||(7414208-7414351)
chr1 (412-513)||(1236205-1236306)
chr1 (431-555)||(39241172-39241296)
chr1 (416-490)||(1749521-1749595)
chr1 (412-480)||(33020207-33020275)
chr1 (434-526)||(26842462-26842552)
chr1 (412-526)||(33846820-33846934)
chr1 (412-526)||(33947044-33947158)
chr1 (468-539)||(37875849-37875920)
chr1 (412-444)||(1236071-1236103)
chr1 (412-444)||(10737702-10737734)
chr1 (412-444)||(46220503-46220535)
chr1 (412-444)||(47669363-47669395)
chr1 (426-526)||(49112439-49112535)
chr1 (414-444)||(9831747-9831777)
chr1 (412-442)||(48565063-48565093)
chr1 (412-444)||(8889687-8889719)
chr1 (412-444)||(33023428-33023460)
chr1 (412-444)||(37875728-37875760)
[»] chr4 (20 HSPs)
chr4 (412-555)||(45590743-45590886)
chr4 (412-555)||(8955909-8956052)
chr4 (421-555)||(34334342-34334476)
chr4 (412-555)||(33288538-33288681)
chr4 (417-555)||(49162108-49162245)
chr4 (412-555)||(18835706-18835851)
chr4 (414-510)||(39481906-39482002)
chr4 (412-503)||(30469353-30469444)
chr4 (426-555)||(50774191-50774325)
chr4 (477-555)||(36971115-36971192)
chr4 (412-480)||(19256187-19256255)
chr4 (426-526)||(26025685-26025784)
chr4 (426-480)||(36968353-36968407)
chr4 (426-555)||(33109031-33109163)
chr4 (412-461)||(36016280-36016329)
chr4 (412-445)||(19257103-19257136)
chr4 (414-444)||(8955779-8955809)
chr4 (412-444)||(39482106-39482138)
chr4 (412-444)||(45590986-45591018)
chr4 (412-444)||(49162332-49162364)
[»] scaffold0103 (1 HSPs)
scaffold0103 (412-555)||(44620-44764)


Alignment Details
Target: chr2 (Bit Score: 181; Significance: 2e-97; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 18 - 262
Target Start/End: Complemental strand, 31224292 - 31224050
Alignment:
Q  18 gaaaatgataaagatgtcataggtaatttcggaatataaatctgtcataaaaagtaaatctccaaaagcgctttcaattgtcacagaagctacaaatttc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||| |    
T  31224292 gaaaatgataaagatgtcataggtaatttcggaatataaatctgtcataaaaagtaaatcttcaaaagcgctttcaattgccacagaagctacagattcc 31224193  T
Q  118 agctttgagtgaacgtgagtttggggcctaaaccacattcaagggaatcgcttctatagtttaccaaacaccagnnnnnnnnnttgtgaaaccgcgtttg 217  Q
    |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||         |||||||||||||||||    
T  31224192 agctttgagtgaacgtgagtttggggcctaaaccacgtttaagggaatcgcttctatagtttaccaaataccag--aaaaaaattgtgaaaccgcgtttg 31224095  T
Q  218 agtttataaaagcacatttaaaaaggagataaaaagtgtgctttt 262  Q
    |||||||||||||| ||||||||||||||||||||||||||||||    
T  31224094 agtttataaaagcagatttaaaaaggagataaaaagtgtgctttt 31224050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 413 - 555
Target Start/End: Original strand, 15233757 - 15233899
Alignment:
Q  413 ctccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccct 512  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  15233757 ctccctctattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctcaagtttaccct 15233856  T
Q  513 tgttggaaaacacaataaactattaaagtagttgtgacctttg 555  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  15233857 tgttggaaaacacaataaactattaaagtagttgtgacctttg 15233899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 412 - 555
Target Start/End: Complemental strand, 43041125 - 43040982
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccc 511  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  43041125 actccctccattccttttcttttgatgttttaaaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaattttaccc 43041026  T
Q  512 ttgttggaaaacacaataaactattaaagtagttgtgacctttg 555  Q
    |||||||||||||| |||||||||||||||||||||||||||||    
T  43041025 ttgttggaaaacaccataaactattaaagtagttgtgacctttg 43040982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 412 - 555
Target Start/End: Complemental strand, 35793182 - 35793040
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccc 511  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||    
T  35793182 actccctccattctttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagagaatttattattgtttt-tcaagtttaccc 35793084  T
Q  512 ttgttggaaaacacaataaactattaaagtagttgtgacctttg 555  Q
    ||||||||||||||||||||||||||||||||||||||| ||||    
T  35793083 ttgttggaaaacacaataaactattaaagtagttgtgacatttg 35793040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 412 - 555
Target Start/End: Original strand, 41252416 - 41252559
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccc 511  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||    
T  41252416 actccctccattccttttctttttatgttttagaacttcaaatatattccaaaacttttgatgttttagtgaatttattattgtgttctcaagtttatcc 41252515  T
Q  512 ttgttggaaaacacaataaactattaaagtagttgtgacctttg 555  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||    
T  41252516 ttgttggaaaatacaataaactattaaagtagttgtgacatttg 41252559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 412 - 549
Target Start/End: Original strand, 31296084 - 31296221
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccc 511  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||     
T  31296084 actccttccattctttttcttttgatgttttagaacttcaactatattctaaaacttttgatgttttagtgaatttattattgttttctcaaatttacct 31296183  T
Q  512 ttgttggaaaacacaataaactattaaagtagttgtga 549  Q
    |||||| |||||||||||||||||||||||||||||||    
T  31296184 ttgttgaaaaacacaataaactattaaagtagttgtga 31296221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 412 - 554
Target Start/End: Complemental strand, 44104832 - 44104683
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccc 511  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  44104832 actccctccgttccttttcttttgatgttttagaacttcaactatatttcaaaacttttgatgttttagtgaatttattattattttctcaagtttaccc 44104733  T
Q  512 -------ttgttggaaaacacaataaactattaaagtagttgtgaccttt 554  Q
           ||||||||||||||||||||||||||| |||||||||||||||    
T  44104732 ttataaattgttggaaaacacaataaactattaaggtagttgtgaccttt 44104683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 412 - 555
Target Start/End: Original strand, 41642892 - 41643038
Alignment:
Q  412 actccctccattccttttcttttgatgtttt-agaacttcaactata--ttccaaaacttttgatgttttagtaaatttattattgttttctcaagttta 508  Q
    |||||||||||| |||||||||||||||||| |||| ||||||||||  |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  41642892 actccctccatttcttttcttttgatgtttttagaatttcaactatatattccaaaacttttgatgttttagtgaatttattattgttttctcaagttta 41642991  T
Q  509 cccttgttggaaaacacaataaactattaaagtagttgtgacctttg 555  Q
    || ||  |||||||||| |||||||||||||||||||||||||||||    
T  41642992 ccttttctggaaaacaccataaactattaaagtagttgtgacctttg 41643038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 426 - 555
Target Start/End: Complemental strand, 31903641 - 31903513
Alignment:
Q  426 ttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttggaaaacac 525  Q
    |||| |||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||    
T  31903641 tttttttttgatgttttagaacttcaaatatattccaaattttttgatgttttagtaaatttattattgttttatc-agtttacccttattggaaaacac 31903543  T
Q  526 aataaactattaaagtagttgtgacctttg 555  Q
     |||||||||||||||||||||||||||||    
T  31903542 cataaactattaaagtagttgtgacctttg 31903513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 338 - 412
Target Start/End: Complemental strand, 31224008 - 31223934
Alignment:
Q  338 tttattaaagtaatgtccaacaaaaagatcaccactattgacgaaagttgttaaattattcatattattaaatga 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  31224008 tttattaaagtaatgtccaacaaaaagatcaccactattgacgaaagttgttaaatttttcatattattaaatga 31223934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 412 - 480
Target Start/End: Complemental strand, 10118728 - 10118660
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttag 480  Q
    |||||||||||||||||||||||||| ||||||| ||| |||| |||||||||||||||||||||||||    
T  10118728 actccctccattccttttcttttgatattttagagcttaaactttattccaaaacttttgatgttttag 10118660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 426 - 548
Target Start/End: Original strand, 21727684 - 21727809
Alignment:
Q  426 ttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttg--gaaaac 523  Q
    |||||||||||||||||||||||||||||||||| |||||  ||||||||||| ||| |  || |||| ||| | ||| |||||||||||||   |||||    
T  21727684 ttttcttttgatgttttagaacttcaactatatttcaaaatatttgatgttttggtataactaatattttttccccaaatttacccttgttgaaaaaaac 21727783  T
Q  524 acaat-aaactattaaagtagttgtg 548  Q
    ||||| |||||||||||| |||||||    
T  21727784 acaataaaactattaaaggagttgtg 21727809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 412 - 444
Target Start/End: Original strand, 10112340 - 10112372
Alignment:
Q  412 actccctccattccttttcttttgatgttttag 444  Q
    |||||||||||||||||||||||||||||||||    
T  10112340 actccctccattccttttcttttgatgttttag 10112372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 412 - 444
Target Start/End: Complemental strand, 15234031 - 15233999
Alignment:
Q  412 actccctccattccttttcttttgatgttttag 444  Q
    |||||||||||||||||||||||||||||||||    
T  15234031 actccctccattccttttcttttgatgttttag 15233999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 412 - 480
Target Start/End: Original strand, 36963132 - 36963200
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttag 480  Q
    |||| ||| |||||||||||||| ||||||||||| || |||| |||| |||||  |||||||||||||    
T  36963132 actcgctctattccttttcttttaatgttttagaatttaaactttatttcaaaaaatttgatgttttag 36963200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 412 - 444
Target Start/End: Original strand, 43040850 - 43040882
Alignment:
Q  412 actccctccattccttttcttttgatgttttag 444  Q
    |||||||||||||||||||||||||||||||||    
T  43040850 actccctccattccttttcttttgatgttttag 43040882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 412 - 443
Target Start/End: Original strand, 44104547 - 44104578
Alignment:
Q  412 actccctccattccttttcttttgatgtttta 443  Q
    ||||||||||||||||||||||||||||||||    
T  44104547 actccctccattccttttcttttgatgtttta 44104578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 140; Significance: 5e-73; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 412 - 555
Target Start/End: Original strand, 17904164 - 17904307
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccc 511  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  17904164 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttaccc 17904263  T
Q  512 ttgttggaaaacacaataaactattaaagtagttgtgacctttg 555  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  17904264 ttgttggaaaacacaataaactattaaagtagttgtgacctttg 17904307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 412 - 555
Target Start/End: Original strand, 26770180 - 26770323
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccc 511  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  26770180 actccctccattccttttcttttgatgttttagaacttcaactaaattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttaccc 26770279  T
Q  512 ttgttggaaaacacaataaactattaaagtagttgtgacctttg 555  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  26770280 ttgttggaaaacacaataaactattaaagtagttgtgacctttg 26770323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 412 - 555
Target Start/End: Complemental strand, 29427440 - 29427297
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccc 511  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  29427440 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttaccc 29427341  T
Q  512 ttgttggaaaacacaataaactattaaagtagttgtgacctttg 555  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  29427340 ttgttggaaaacacaataaactattaaagtagttgtgatctttg 29427297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 412 - 555
Target Start/End: Complemental strand, 37179607 - 37179465
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccc 511  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  37179607 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttct-aagtttaccc 37179509  T
Q  512 ttgttggaaaacacaataaactattaaagtagttgtgacctttg 555  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  37179508 ttgttggaaaacacaataaactattaaagtagttgtgacctttg 37179465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 412 - 555
Target Start/End: Complemental strand, 46467611 - 46467468
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccc 511  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||     
T  46467611 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttacct 46467512  T
Q  512 ttgttggaaaacacaataaactattaaagtagttgtgacctttg 555  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  46467511 ttgttggaaaacacaataaactattaaagtagttgcgacctttg 46467468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 412 - 555
Target Start/End: Complemental strand, 6387968 - 6387825
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccc 511  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||    
T  6387968 actccctccattccttttcttttgatgttttagaactgcaactatattccaaaacttttgatgttttagtgaatttgttattgttttatcaagtttaccc 6387869  T
Q  512 ttgttggaaaacacaataaactattaaagtagttgtgacctttg 555  Q
    ||||||||||||||||||||||||||||||||||||||| ||||    
T  6387868 ttgttggaaaacacaataaactattaaagtagttgtgacatttg 6387825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 412 - 555
Target Start/End: Original strand, 6389733 - 6389876
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccc 511  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |    
T  6389733 actccctccattcattttgttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttactc 6389832  T
Q  512 ttgttggaaaacacaataaactattaaagtagttgtgacctttg 555  Q
    ||||||||||||||||||||||||||||||||||||||| ||||    
T  6389833 ttgttggaaaacacaataaactattaaagtagttgtgacatttg 6389876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 419 - 555
Target Start/End: Original strand, 9876271 - 9876407
Alignment:
Q  419 ccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttgg 518  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  9876271 ccattccttttcttttgatgttttaaaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaattttacccttgttgg 9876370  T
Q  519 aaaacacaataaactattaaagtagttgtgacctttg 555  Q
    ||||||| |||||||||||||||||||||||||||||    
T  9876371 aaaacaccataaactattaaagtagttgtgacctttg 9876407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 412 - 555
Target Start/End: Complemental strand, 29891102 - 29890959
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccc 511  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||| ||    
T  29891102 actccctccattccttttcttttgatgttttaaaacttcaactatattccaaaatttttgatgttttagtgaatttatgattgttttctcaagtttatcc 29891003  T
Q  512 ttgttggaaaacacaataaactattaaagtagttgtgacctttg 555  Q
    ||| ||||||||||||||||||||||||||||||||||| ||||    
T  29891002 ttgatggaaaacacaataaactattaaagtagttgtgacttttg 29890959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 412 - 555
Target Start/End: Complemental strand, 41922130 - 41921987
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccc 511  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||    
T  41922130 actccctctatttcttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttaatattgttttatcaagtttaccc 41922031  T
Q  512 ttgttggaaaacacaataaactattaaagtagttgtgacctttg 555  Q
    |||||| ||||||||||||||||||||||||||||  |||||||    
T  41922030 ttgttgaaaaacacaataaactattaaagtagttgcaacctttg 41921987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 412 - 555
Target Start/End: Original strand, 4405110 - 4405253
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccc 511  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||| |||| ||    
T  4405110 actccctccatttcttttcttttgatgttttaaaacttcaactatattctaaaacatttgatgttttagtgaatttattattgttttctcaattttatcc 4405209  T
Q  512 ttgttggaaaacacaataaactattaaagtagttgtgacctttg 555  Q
    |||||||||||||| ||||| |||||||||||||||||||||||    
T  4405210 ttgttggaaaacaccataaattattaaagtagttgtgacctttg 4405253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 415 - 534
Target Start/End: Complemental strand, 31503210 - 31503091
Alignment:
Q  415 ccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttg 514  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  31503210 ccctccgttccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttcttaagtttacccttg 31503111  T
Q  515 ttggaaaacacaataaacta 534  Q
    ||||||||||| ||||||||    
T  31503110 ttggaaaacactataaacta 31503091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 412 - 520
Target Start/End: Complemental strand, 19523973 - 19523863
Alignment:
Q  412 actccctccattccttttcttt--tgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttac 509  Q
    |||||||| ||||||||| |||  |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||    
T  19523973 actccctctattccttttttttgttgatgttttagaacttcaactatattccaaaatttttgatgttttagtgaatttattattgttttatcaagtttac 19523874  T
Q  510 ccttgttggaa 520  Q
    |||||||||||    
T  19523873 ccttgttggaa 19523863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 414 - 510
Target Start/End: Original strand, 9332364 - 9332460
Alignment:
Q  414 tccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 510  Q
    ||||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  9332364 tccctccattttttttcttttgatgttttagaacttcaactatatttcaaaacttttgatgttttagtgaatttattattgttttctcaggtttacc 9332460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 426 - 553
Target Start/End: Original strand, 33974506 - 33974636
Alignment:
Q  426 ttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttggaaaacac 525  Q
    ||||||||||||||||| ||||||||||||||||||||||  ||| ||||||||||| ||||| |||| ||||| ||||||||||||||||| |||||||    
T  33974506 ttttcttttgatgttttcgaacttcaactatattccaaaatattttatgttttagtatatttaatatttttttcccaagtttacccttgttgaaaaacac 33974605  T
Q  526 a--at-aaactattaaagtagttgtgacctt 553  Q
    |  || |||||||||||| ||||||||||||    
T  33974606 accataaaactattaaaggagttgtgacctt 33974636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 412 - 555
Target Start/End: Original strand, 12252070 - 12252216
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccc 511  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||||||  ||||||||| || || ||||| | |||||||| ||||||||| |    
T  12252070 actccctccattttttttcttttgatgttttagaacttcaactatattccaaaatatttgatgttctaatatatttaatcttgttttcccaagtttactc 12252169  T
Q  512 ttgttggaaaacaca--at-aaactattaaagtagttgtgacctttg 555  Q
    | |||| ||||||||  || |||||||||||| |||| |||| ||||    
T  12252170 tagttgaaaaacacaccataaaactattaaaggagttatgacttttg 12252216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 431 - 555
Target Start/End: Complemental strand, 9215722 - 9215595
Alignment:
Q  431 ttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttggaaa--acacaat 528  Q
    |||||||||||||||||||||||||||||||||||  ||| ||||||||||| || || |||| |||| |||| ||||||||||||| |||  |||| ||    
T  9215722 ttttgatgttttagaacttcaactatattccaaaatatttaatgttttagtatatgtaatatttttttttcaaatttacccttgttgaaaaagacaccat 9215623  T
Q  529 -aaactattaaagtagttgtgacctttg 555  Q
     ||| |||||||| ||||||||||||||    
T  9215622 aaaattattaaaggagttgtgacctttg 9215595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 426 - 555
Target Start/End: Original strand, 46689878 - 46690011
Alignment:
Q  426 ttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttggaaa---a 522  Q
    ||||||||||||||||||||||||||||||||||||||||   ||||||||||||||   ||| |||| ||||| ||||||||||||| ||| |||   |    
T  46689878 ttttcttttgatgttttagaacttcaactatattccaaaatacttgatgttttagtatggttaatatttttttcccaagtttaccctttttgaaaaaaca 46689977  T
Q  523 cacaat-aaactattaaagtagttgtgacctttg 555  Q
    ||| || |||||||||||| ||||||||| ||||    
T  46689978 cacgataaaactattaaagaagttgtgacatttg 46690011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 412 - 526
Target Start/End: Original strand, 29722956 - 29723070
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccc 511  Q
    |||| ||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||  |  ||||||| | |||   ||| |||||||    
T  29722956 actctctccattccttttcttttgatattttagaacttaaactttattccaaaacttttgatgttttataatttttattactttttatccaattttaccc 29723055  T
Q  512 ttgttggaaaacaca 526  Q
    |||||| ||||||||    
T  29723056 ttgttgaaaaacaca 29723070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 412 - 526
Target Start/End: Original strand, 43701552 - 43701666
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccc 511  Q
    |||||||||||||||||||||||||||||||||||||| ||||  |||||||||  ||||||||||||| |  |||| |||| |||   ||| |||||||    
T  43701552 actccctccattccttttcttttgatgttttagaacttaaacttcattccaaaaaatttgatgttttagaatttttaatattttttatccaattttaccc 43701651  T
Q  512 ttgttggaaaacaca 526  Q
    |||||| ||||||||    
T  43701652 ttgttgaaaaacaca 43701666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 412 - 555
Target Start/End: Complemental strand, 31858370 - 31858225
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccc 511  Q
    ||||||||||||  |||||||||||||||||| |||||||||||||||  ||||  ||||||||||||||| ||||| | || ||||| ||| |||||||    
T  31858370 actccctccattttttttcttttgatgttttacaacttcaactatattttaaaatatttgatgttttagtatatttaat-tttttttcccaaatttaccc 31858272  T
Q  512 ttgttggaaaacaca--at-aaactattaaagtagttgtgacctttg 555  Q
    | |||| ||||||||  || ||| |||||||  ||||||||||||||    
T  31858271 tcgttgaaaaacacatcataaaagtattaaatgagttgtgacctttg 31858225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 412 - 526
Target Start/End: Complemental strand, 33379243 - 33379130
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccc 511  Q
    |||||||||||| ||||||||||||||||||||||||||||||  ||| |||||  ||||||||||||| |  |||| |||| || || ||| |||||||    
T  33379243 actccctccatttcttttcttttgatgttttagaacttcaacttgatttcaaaatatttgatgttttaggatttttaatatttttatc-caattttaccc 33379145  T
Q  512 ttgttggaaaacaca 526  Q
    |||||| ||||||||    
T  33379144 ttgttgaaaaacaca 33379130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 426 - 488
Target Start/End: Complemental strand, 49011120 - 49011058
Alignment:
Q  426 ttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaattta 488  Q
    ||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||| |||||    
T  49011120 ttttcttttgatgttttaggacttcaactatatttcaaaacatttgatgttttagtatattta 49011058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 412 - 556
Target Start/End: Original strand, 33915718 - 33915863
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccc 511  Q
    ||||||||||||  |||||||||| |||||| ||| || ||||||||| |||||  ||||||||||||||| ||||| | || ||||| |||||||| ||    
T  33915718 actccctccattt-ttttcttttgttgtttttgaattttaactatatttcaaaatatttgatgttttagtatatttaatttttttttcccaagttta-cc 33915815  T
Q  512 ttgttggaaaacaca--at-aaactattaaagtagttgtgacctttgc 556  Q
    |||||| ||||||||  || |||||||||||   ||||||||||||||    
T  33915816 ttgttgaaaaacacaccataaaactattaaataggttgtgacctttgc 33915863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 469 - 555
Target Start/End: Original strand, 48049057 - 48049146
Alignment:
Q  469 ttgatgttttagtaaatttattattgttttctcaagtttacccttgttggaaaacacaat---aaactattaaagtagttgtgacctttg 555  Q
    |||||||||||||| ||||| |||| ||||| ||||||||||| ||||| |||||||| |   |||||||||||| ||||||||||||||    
T  48049057 ttgatgttttagtatatttaatatttttttcccaagtttacccctgttgaaaaacacactagaaaactattaaaggagttgtgacctttg 48049146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 431 - 555
Target Start/End: Original strand, 5514797 - 5514923
Alignment:
Q  431 ttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttggaaaacacaat-- 528  Q
    |||| |||||||||||||| || ||||||| ||||  ||||||  ||||||| ||||| |||| | || |||||||||||||||||  |||||||| |      
T  5514797 ttttaatgttttagaactttaaatatattctaaaatatttgattatttagtatatttaatatt-tattttcaagtttacccttgttaaaaaacacactat 5514895  T
Q  529 -aaactattaaagtagttgtgacctttg 555  Q
     |||||||||||  ||||||||||||||    
T  5514896 aaaactattaaaagagttgtgacctttg 5514923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 412 - 444
Target Start/End: Complemental strand, 4405385 - 4405353
Alignment:
Q  412 actccctccattccttttcttttgatgttttag 444  Q
    |||||||||||||||||||||||||||||||||    
T  4405385 actccctccattccttttcttttgatgttttag 4405353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 412 - 444
Target Start/End: Complemental strand, 17904439 - 17904407
Alignment:
Q  412 actccctccattccttttcttttgatgttttag 444  Q
    |||||||||||||||||||||||||||||||||    
T  17904439 actccctccattccttttcttttgatgttttag 17904407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 412 - 444
Target Start/End: Complemental strand, 29723413 - 29723381
Alignment:
Q  412 actccctccattccttttcttttgatgttttag 444  Q
    |||||||||||||||||||||||||||||||||    
T  29723413 actccctccattccttttcttttgatgttttag 29723381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 412 - 444
Target Start/End: Original strand, 29890827 - 29890859
Alignment:
Q  412 actccctccattccttttcttttgatgttttag 444  Q
    |||||||||||||||||||||||||||||||||    
T  29890827 actccctccattccttttcttttgatgttttag 29890859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 412 - 444
Target Start/End: Original strand, 37179332 - 37179364
Alignment:
Q  412 actccctccattccttttcttttgatgttttag 444  Q
    |||||||||||||||||||||||||||||||||    
T  37179332 actccctccattccttttcttttgatgttttag 37179364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 412 - 443
Target Start/End: Original strand, 46467336 - 46467367
Alignment:
Q  412 actccctccattccttttcttttgatgtttta 443  Q
    ||||||||||||||||||||||||||||||||    
T  46467336 actccctccattccttttcttttgatgtttta 46467367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 501 - 555
Target Start/End: Complemental strand, 22753257 - 22753201
Alignment:
Q  501 caagtttacccttgttggaaaacaca--ataaactattaaagtagttgtgacctttg 555  Q
    ||||||||| |||||||||||||| |  |||||||||||||  ||||||||||||||    
T  22753257 caagtttacgcttgttggaaaacaaactataaactattaaaaaagttgtgacctttg 22753201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 416 - 444
Target Start/End: Original strand, 6387697 - 6387725
Alignment:
Q  416 cctccattccttttcttttgatgttttag 444  Q
    |||||||||||||||||||||||||||||    
T  6387697 cctccattccttttcttttgatgttttag 6387725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 136; Significance: 1e-70; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 412 - 555
Target Start/End: Complemental strand, 33838005 - 33837862
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccc 511  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  33838005 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctcaagtttaccc 33837906  T
Q  512 ttgttggaaaacacaataaactattaaagtagttgtgacctttg 555  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  33837905 ttgttggaaaacacaataaactattaaagtagttgtgacctttg 33837862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 412 - 555
Target Start/End: Complemental strand, 2509072 - 2508929
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccc 511  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  2509072 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctcaagtttaccc 2508973  T
Q  512 ttgttggaaaacacaataaactattaaagtagttgtgacctttg 555  Q
    ||||||||||||||| ||||||||||||||||||||||||||||    
T  2508972 ttgttggaaaacacagtaaactattaaagtagttgtgacctttg 2508929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 412 - 555
Target Start/End: Original strand, 28378948 - 28379091
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccc 511  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  28378948 actccctccattatttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttaccc 28379047  T
Q  512 ttgttggaaaacacaataaactattaaagtagttgtgacctttg 555  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  28379048 ttgttggaaaacacaataaactattaaagtagttgtgacctttg 28379091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 412 - 555
Target Start/End: Complemental strand, 45334552 - 45334409
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccc 511  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||    
T  45334552 actccctccattccttttcttttgatgttttagaactttaactatattccaaaacttttgatgttttagtgaatttgttattgttttttcaagtttaccc 45334453  T
Q  512 ttgttggaaaacacaataaactattaaagtagttgtgacctttg 555  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  45334452 ttgttggaaaacacaataaactattaaagtagttgtgacctttg 45334409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 416 - 541
Target Start/End: Complemental strand, 13469777 - 13469652
Alignment:
Q  416 cctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgt 515  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  13469777 cctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatattttagtaaatttataattgttttctcaagtttacccttgt 13469678  T
Q  516 tggaaaacacaataaactattaaagt 541  Q
    ||||||||||||||||||||||||||    
T  13469677 tggaaaacacaataaactattaaagt 13469652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 412 - 555
Target Start/End: Original strand, 25106212 - 25106355
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccc 511  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||| ||||||||||||    
T  25106212 actctctccattccttttcttttgatgttttagaacttcaactatattccaaaatttttgatgttttagtgaatttatgattgttttttcaagtttaccc 25106311  T
Q  512 ttgttggaaaacacaataaactattaaagtagttgtgacctttg 555  Q
    ||| ||||||||||||||||||||||||||||||||||| ||||    
T  25106312 ttgatggaaaacacaataaactattaaagtagttgtgacttttg 25106355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 412 - 555
Target Start/End: Original strand, 9739986 - 9740129
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccc 511  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||| | |||||||||||| ||||||||||||| ||    
T  9739986 actccctccattccttttcttttgatgttttagaacttcatgtatatttcaaaacttttgatgttttactgaatttattattgctttctcaagtttatcc 9740085  T
Q  512 ttgttggaaaacacaataaactattaaagtagttgtgacctttg 555  Q
    |||||| |||||||||||||||||||||||||||||||| ||||    
T  9740086 ttgttgaaaaacacaataaactattaaagtagttgtgacatttg 9740129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 416 - 555
Target Start/End: Complemental strand, 38495744 - 38495605
Alignment:
Q  416 cctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgt 515  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||| |||| |||||||||||| || |||||||||||||||||||||||||||||||||    
T  38495744 cctccattctttttcttgtgatgttttagaacttcaactatattctaaaatttttgatgttttggtgaatttattattgttttctcaagtttacccttgt 38495645  T
Q  516 tggaaaacacaataaactattaaagtagttgtgacctttg 555  Q
    |||||||||||||||||||||||||||||| |||| ||||    
T  38495644 tggaaaacacaataaactattaaagtagttatgacatttg 38495605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 18 - 191
Target Start/End: Original strand, 33627763 - 33627937
Alignment:
Q  18 gaaaatgataaagatgtcataggtaatttcggaatataaatctgtcataaaaagtaaatctccaaaa-gcgctttcaattgtcacagaagctacaaattt 116  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||| ||  ||||||||| | |||||||||||| ||     
T  33627763 gaaaatgataaagatgtcatgggtaatttcggaatatagatctgtcataaaaagcaaatctccaaaacgcaatttcaattgccgcagaagctacaagttc 33627862  T
Q  117 cagctttgagtgaacgtgagtttggggcctaaaccacattcaagggaatcgcttctatagtttaccaaacaccag 191  Q
    ||||||||||| |||||||||||| |||||||||||| |||||| ||||| ||||| |||||| |||||||||||    
T  33627863 cagctttgagtaaacgtgagtttgaggcctaaaccacgttcaagtgaatcacttctgtagtttgccaaacaccag 33627937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 412 - 534
Target Start/End: Complemental strand, 27793467 - 27793345
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccc 511  Q
    ||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |    
T  27793467 actccttccattcattttcttttgatgttttagatcttcaactatattccaaaacttttaatgttttagtgaatttattattgttttctcaagtttactc 27793368  T
Q  512 ttgttggaaaacacaataaacta 534  Q
    |||||||||||||||||||||||    
T  27793367 ttgttggaaaacacaataaacta 27793345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 455 - 555
Target Start/End: Complemental strand, 2626472 - 2626371
Alignment:
Q  455 atattccaaaacttttgatgttttagtaaatttattatt-gttttctcaagtttacccttgttggaaaacacaataaactattaaagtagttgtgacctt 553  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  2626472 atattccaaaacttttgatgttttagtgaatttattatttgttttctcaagtttacccttgttggaaaacacaataaactattaaagtaattgtgacctt 2626373  T
Q  554 tg 555  Q
    ||    
T  2626372 tg 2626371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 412 - 555
Target Start/End: Complemental strand, 32183758 - 32183614
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccc 511  Q
    ||||||| ||||  ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||| |||| ||||| |||||||||||    
T  32183758 actcccttcattttttttcttttgatgttttagaacttcaactatattccaaaatatttgatgttttagtatatttaatatttttttcccaagtttaccc 32183659  T
Q  512 ttgttggaaaacaca--ataaactattaaagtagttgtgacctttg 555  Q
    |||||||||||||||  |||||||||| ||| ||||| ||||||||    
T  32183658 ttgttggaaaacacaccataaactatt-aaggagttgcgacctttg 32183614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 18 - 187
Target Start/End: Original strand, 41289731 - 41289900
Alignment:
Q  18 gaaaatgataaagatgtcataggtaatttcggaatataaatctgtca-taaaaagtaaatctccaaaagcgctttcaattgtcacagaagctacaaattt 116  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||  |||||| |||||||| |||||||||  ||||  | |||||||| | ||||     
T  41289731 gaaaatgataaagatgtcatgggtaatttcggaatataaatctgtcaccaaaaagaaaatctcc-aaagcgcttctaattaccgcagaagctccgaattc 41289829  T
Q  117 cagctttgagtgaacgtgagtttggggcctaaaccacattcaagggaatcgcttctatagtttaccaaaca 187  Q
     |||||| ||||||||||| ||||||||||||||||| |||||  ||||||| ||| ||||||||||||||    
T  41289830 tagcttttagtgaacgtgaatttggggcctaaaccacgttcaactgaatcgcgtctgtagtttaccaaaca 41289900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 412 - 480
Target Start/End: Original strand, 27024434 - 27024502
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttag 480  Q
    |||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||    
T  27024434 actccctccattccttttcttttgatgttttagagcttaaactttattccaaaacttttgatgttttag 27024502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 412 - 478
Target Start/End: Complemental strand, 25979035 - 25978969
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgtttt 478  Q
    |||||||||||| |||||||||||||||||||| ||||||||| |||| |||||| |||||||||||    
T  25979035 actccctccatttcttttcttttgatgttttaggacttcaactttatttcaaaacatttgatgtttt 25978969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 412 - 526
Target Start/End: Original strand, 8235163 - 8235276
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccc 511  Q
    ||||||||||||  ||||||||||||||||||| ||||||| | |||| |||||| ||||||||||||  |  |||| |||| |||  |||| |||||||    
T  8235163 actccctccatttattttcttttgatgttttaggacttcaattttatttcaaaacatttgatgttttaagatttttaatatt-tttcttcaattttaccc 8235261  T
Q  512 ttgttggaaaacaca 526  Q
    |||||| ||||||||    
T  8235262 ttgttgaaaaacaca 8235276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 446 - 526
Target Start/End: Complemental strand, 3203492 - 3203413
Alignment:
Q  446 acttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttggaaaacaca 526  Q
    ||||||||||||||  ||||  ||||||||||||||| ||||| |||| |||||||||||||| | |||||| ||||||||    
T  3203492 acttcaactatattttaaaatatttgatgttttagtatatttaatatt-ttttctcaagtttatctttgttgaaaaacaca 3203413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 426 - 473
Target Start/End: Complemental strand, 2626714 - 2626667
Alignment:
Q  426 ttttcttttgatgttttagaacttcaactatattccaaaacttttgat 473  Q
    |||| |||| || |||||||||||||||||||||||||||||||||||    
T  2626714 ttttttttttatattttagaacttcaactatattccaaaacttttgat 2626667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 412 - 444
Target Start/End: Complemental strand, 25106487 - 25106455
Alignment:
Q  412 actccctccattccttttcttttgatgttttag 444  Q
    |||||||||||||||||||||||||||||||||    
T  25106487 actccctccattccttttcttttgatgttttag 25106455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 412 - 444
Target Start/End: Complemental strand, 27027687 - 27027655
Alignment:
Q  412 actccctccattccttttcttttgatgttttag 444  Q
    |||||||||||||||||||||||||||||||||    
T  27027687 actccctccattccttttcttttgatgttttag 27027655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 412 - 444
Target Start/End: Complemental strand, 28379223 - 28379191
Alignment:
Q  412 actccctccattccttttcttttgatgttttag 444  Q
    |||||||||||||||||||||||||||||||||    
T  28379223 actccctccattccttttcttttgatgttttag 28379191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 412 - 444
Target Start/End: Original strand, 33837730 - 33837762
Alignment:
Q  412 actccctccattccttttcttttgatgttttag 444  Q
    |||||||||||||||||||||||||||||||||    
T  33837730 actccctccattccttttcttttgatgttttag 33837762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 412 - 444
Target Start/End: Original strand, 45334277 - 45334309
Alignment:
Q  412 actccctccattccttttcttttgatgttttag 444  Q
    |||||||||||||||||||||||||||||||||    
T  45334277 actccctccattccttttcttttgatgttttag 45334309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 412 - 443
Target Start/End: Complemental strand, 9740262 - 9740231
Alignment:
Q  412 actccctccattccttttcttttgatgtttta 443  Q
    ||||||||||||||||||||||||||||||||    
T  9740262 actccctccattccttttcttttgatgtttta 9740231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 412 - 444
Target Start/End: Original strand, 38495473 - 38495505
Alignment:
Q  412 actccctccattccttttcttttgatgttttag 444  Q
    ||||||||||||| |||||||||||||||||||    
T  38495473 actccctccattcattttcttttgatgttttag 38495505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 136; Significance: 1e-70; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 412 - 555
Target Start/End: Complemental strand, 27312392 - 27312249
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccc 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  27312392 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttaccc 27312293  T
Q  512 ttgttggaaaacacaataaactattaaagtagttgtgacctttg 555  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  27312292 ttgttggaaaacacaataaactattaaagtagttgtgacctttg 27312249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 412 - 555
Target Start/End: Original strand, 32274435 - 32274578
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccc 511  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  32274435 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctcaagtttaccc 32274534  T
Q  512 ttgttggaaaacacaataaactattaaagtagttgtgacctttg 555  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  32274535 ttgttggaaaacacaataaactattaaagtagttgtgacctttg 32274578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 413 - 555
Target Start/End: Complemental strand, 8504977 - 8504835
Alignment:
Q  413 ctccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccct 512  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||| |||||||||    
T  8504977 ctccctccattcattttcttttgatgttttagaacttcaactatatttcaaaacttttgatgttttagtgaatttattattattttctcaggtttaccct 8504878  T
Q  513 tgttggaaaacacaataaactattaaagtagttgtgacctttg 555  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  8504877 tgttgaaaaacacaataaactattaaagtagttgtgacctttg 8504835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 418 - 555
Target Start/End: Original strand, 5003889 - 5004026
Alignment:
Q  418 tccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttg 517  Q
    ||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  5003889 tccattcatttttttttgatgttttagaacttcaactatatttcaaaacttttgatgttttagtgaatttattattgttttctcaagtttacccttgttg 5003988  T
Q  518 gaaaacacaataaactattaaagtagttgtgacctttg 555  Q
    |||||||||||||||||||||||||||| |||| ||||    
T  5003989 gaaaacacaataaactattaaagtagttttgacatttg 5004026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 698924 - 698708
Alignment:
Q  18 gaaaatgataaagatgtcataggtaatttcggaatataaatctgtcataaaaagtaaatctccaaaa-gcgctttcaattgtcacagaagctacaaattt 116  Q
    |||||||||||||||||||| ||||||||||||||||| || |||||||||||| |||||||||||| ||  ||||||||| | |||||||||||||||     
T  698924 gaaaatgataaagatgtcatgggtaatttcggaatatagatatgtcataaaaagcaaatctccaaaacgcaatttcaattgccgcagaagctacaaattc 698825  T
Q  117 cagctttgagtgaacgtgagtttggggcctaaaccacattcaagggaatcgcttctatagtttaccaaacaccagnnnnnnnnnttgtgaaaccgcgttt 216  Q
    ||||||||||| || ||||||||| || ||||||||| |||||| ||||||||||| |||||| |||||||||||          |||||||||||||||    
T  698824 cagctttgagtaaatgtgagtttgaggtctaaaccacgttcaagtgaatcgcttctgtagtttgccaaacaccagaaaaaac---tgtgaaaccgcgttt 698728  T
Q  217 gagtttataaaagcacattt 236  Q
    || |||||||| ||||||||    
T  698727 gaatttataaacgcacattt 698708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 412 - 555
Target Start/End: Complemental strand, 29452819 - 29452675
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttatta-ttgttttctcaagtttacc 510  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||||| |||  | ||||||||||||| ||||||||| ||||||||||||||||||     
T  29452819 actccctccatttcttttcttctgatgttttagaacttcaactatattctaaatttcttgatgttttagtgaatttattacttgttttctcaagtttaca 29452720  T
Q  511 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 555  Q
    ||||||||||||||| ||||||||||||| |||||||||||||||    
T  29452719 cttgttggaaaacaccataaactattaaaatagttgtgacctttg 29452675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 412 - 513
Target Start/End: Original strand, 12174701 - 12174802
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccc 511  Q
    ||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  12174701 actccctccattccttttcttttaatgttttagaactttaaatatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttaccc 12174800  T
Q  512 tt 513  Q
    ||    
T  12174801 tt 12174802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 412 - 555
Target Start/End: Complemental strand, 31171266 - 31171123
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccc 511  Q
    |||||||||||| |||||||||||||| ||||||| ||||| | ||||||||||| || |||||| |||| |||||||||||||||||||||||||| |     
T  31171266 actccctccatttcttttcttttgatgatttagaaattcaaatgtattccaaaacattagatgttgtagtgaatttattattgttttctcaagtttatct 31171167  T
Q  512 ttgttggaaaacacaataaactattaaagtagttgtgacctttg 555  Q
    || |||||||||||  |||||||||||| |||||||||||||||    
T  31171166 ttattggaaaacaccttaaactattaaaatagttgtgacctttg 31171123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 412 - 526
Target Start/End: Original strand, 18741948 - 18742062
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccc 511  Q
    |||||||||||| |||||||||||||||||||| ||||||||| |||| |||||| ||||||||||||||| ||||| |||||| ||||||| |||||||    
T  18741948 actccctccatttcttttcttttgatgttttaggacttcaactttatttcaaaacatttgatgttttagtatatttaatattgtattctcaaatttaccc 18742047  T
Q  512 ttgttggaaaacaca 526  Q
    |||||| ||||||||    
T  18742048 ttgttgaaaaacaca 18742062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 472 - 555
Target Start/End: Original strand, 2543142 - 2543225
Alignment:
Q  472 atgttttagtaaatttattattgttttctcaagtttacccttgttggaaaacacaataaactattaaagtagttgtgacctttg 555  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  2543142 atgttttagtgaatttattattgttttctcaagtttacccttgttgaaaaacacaataaactattaaagtagttgtgacatttg 2543225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 412 - 555
Target Start/End: Complemental strand, 7156501 - 7156370
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccc 511  Q
    |||||||||||| |||||||||||||||||||||   ||||||||||||||||||||| ||||||||||| ||||||||||||||||            |    
T  7156501 actccctccatttcttttcttttgatgttttagacaatcaactatattccaaaactttagatgttttagtgaatttattattgtttt------------c 7156414  T
Q  512 ttgttggaaaacacaataaactattaaagtagttgtgacctttg 555  Q
    |||||||||||||| |||||||||||||||| ||||||| ||||    
T  7156413 ttgttggaaaacaccataaactattaaagtaattgtgacatttg 7156370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 412 - 459
Target Start/End: Complemental strand, 29302547 - 29302500
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatatt 459  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  29302547 actccctccattccttttcttttgatgttttagaacttcaactatatt 29302500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 412 - 444
Target Start/End: Original strand, 8504734 - 8504766
Alignment:
Q  412 actccctccattccttttcttttgatgttttag 444  Q
    |||||||||||||||||||||||||||||||||    
T  8504734 actccctccattccttttcttttgatgttttag 8504766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 412 - 444
Target Start/End: Original strand, 27312115 - 27312147
Alignment:
Q  412 actccctccattccttttcttttgatgttttag 444  Q
    |||||||||||||||||||||||||||||||||    
T  27312115 actccctccattccttttcttttgatgttttag 27312147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 412 - 444
Target Start/End: Complemental strand, 2543357 - 2543325
Alignment:
Q  412 actccctccattccttttcttttgatgttttag 444  Q
    ||||||||||||| |||||||||||||||||||    
T  2543357 actccctccattcgttttcttttgatgttttag 2543325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 412 - 444
Target Start/End: Complemental strand, 32274710 - 32274678
Alignment:
Q  412 actccctccattccttttcttttgatgttttag 444  Q
    ||||||||||||| |||||||||||||||||||    
T  32274710 actccctccattcattttcttttgatgttttag 32274678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 136; Significance: 1e-70; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 412 - 555
Target Start/End: Complemental strand, 12399222 - 12399079
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccc 511  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  12399222 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctcaagtttaccc 12399123  T
Q  512 ttgttggaaaacacaataaactattaaagtagttgtgacctttg 555  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  12399122 ttgttggaaaacacaataaactattaaagtagttgtgacctttg 12399079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 412 - 555
Target Start/End: Original strand, 34208539 - 34208682
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccc 511  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  34208539 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctcaagtttaccc 34208638  T
Q  512 ttgttggaaaacacaataaactattaaagtagttgtgacctttg 555  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  34208639 ttgttggaaaacacaataaactattaaagtagttgtgacctttg 34208682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 412 - 555
Target Start/End: Original strand, 29874955 - 29875098
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccc 511  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  29874955 actccctccattctttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttaccc 29875054  T
Q  512 ttgttggaaaacacaataaactattaaagtagttgtgacctttg 555  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  29875055 ttgttggaaaacacaataaactattaaagtagttgtgacctttg 29875098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 412 - 555
Target Start/End: Original strand, 23090299 - 23090442
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccc 511  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||    
T  23090299 actccctccattccttttcttttgatgttttagaacttcaactgtattccaaaatttttgatgttttagtgaatttgttattgttttctcaagtttaccc 23090398  T
Q  512 ttgttggaaaacacaataaactattaaagtagttgtgacctttg 555  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  23090399 ttgttggaaaacacaataaactattaaagtagttgtgacctttg 23090442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 406 - 555
Target Start/End: Original strand, 4145689 - 4145838
Alignment:
Q  406 taaatgactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagt 505  Q
    ||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||    
T  4145689 taaattactcgctccattccttttcttttgatgttttagaactttaactatattccaaaacttttgatgttttagtgaatttgttattgttttcttaagt 4145788  T
Q  506 ttacccttgttggaaaacacaataaactattaaagtagttgtgacctttg 555  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4145789 ttacccttgttggaaaacacaataaactattaaagtagttgtgacctttg 4145838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 412 - 555
Target Start/End: Complemental strand, 4695438 - 4695295
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccc 511  Q
    ||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  4695438 actcccttcattccttttcttttgattttttagaacttcaactatatttcaaaacttttgatgttttagtgaatttgttattgttttctcaagtttaccc 4695339  T
Q  512 ttgttggaaaacacaataaactattaaagtagttgtgacctttg 555  Q
    ||||||||||||||||||||||||||||||||||||||| ||||    
T  4695338 ttgttggaaaacacaataaactattaaagtagttgtgacatttg 4695295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 412 - 550
Target Start/End: Original strand, 3077598 - 3077736
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccc 511  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||||  |||||||||||||||||||| ||||| |||||||||||||||||||| ||    
T  3077598 actccctccattcattttcttttgatgttttagaatttcaactatattttaaaacttttgatgttttagtgaatttgttattgttttctcaagtttatcc 3077697  T
Q  512 ttgttggaaaacacaataaactattaaagtagttgtgac 550  Q
    |||||||||||||||||||||||||||||||||||||||    
T  3077698 ttgttggaaaacacaataaactattaaagtagttgtgac 3077736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 426 - 545
Target Start/End: Complemental strand, 42758072 - 42757953
Alignment:
Q  426 ttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttggaaaacac 525  Q
    |||| |||| ||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  42758072 ttttttttttatgttttagaacttcaactatttttcaaaacttttgatgttttagtgaatttattattgttttctcaagtttatccttgttggaaaacac 42757973  T
Q  526 aataaactattaaagtagtt 545  Q
     |||||||||||||||||||    
T  42757972 gataaactattaaagtagtt 42757953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 476 - 555
Target Start/End: Complemental strand, 22646121 - 22646042
Alignment:
Q  476 tttagtaaatttattattgttttctcaagtttacccttgttggaaaacacaataaactattaaagtagttgtgacctttg 555  Q
    |||||| |||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||| ||||    
T  22646121 tttagtgaatttattattgttttctcaagtttaaccttgttgaaaaacaccataaactattaaagtagttgtgacttttg 22646042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 426 - 526
Target Start/End: Complemental strand, 12096466 - 12096365
Alignment:
Q  426 ttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagta-aatttattattgttttctcaagtttacccttgttggaaaaca 524  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||||||||||| || | |||| |||| ||||||||||| ||| ||||||| ||||||    
T  12096466 ttttcttttgatgttttaggacttcaactatattccaaaacatttgatgttttaatatattttaatattcttttctcaagtgtactcttgttgaaaaaca 12096367  T
Q  525 ca 526  Q
    ||    
T  12096366 ca 12096365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 412 - 526
Target Start/End: Complemental strand, 41610693 - 41610579
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccc 511  Q
    |||| ||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| || |||| || | |||   ||| |||||||    
T  41610693 actctctccatttcttttcttttgatgttttagaacttaaactttattccaaaacttttgatgttttagaaattttaatactttttatccaattttaccc 41610594  T
Q  512 ttgttggaaaacaca 526  Q
    |||||  ||||||||    
T  41610593 ttgttaaaaaacaca 41610579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 412 - 480
Target Start/End: Original strand, 42793041 - 42793109
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttag 480  Q
    |||| ||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||    
T  42793041 actcactccattccttttcttttgatgttttagagcttaaactttattccaaaacttttgatgttttag 42793109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 414 - 478
Target Start/End: Original strand, 4434783 - 4434847
Alignment:
Q  414 tccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgtttt 478  Q
    |||||||||| |||||||||||||||||||| ||||||||| |||| ||| |  |||||||||||    
T  4434783 tccctccatttcttttcttttgatgttttaggacttcaactttatttcaagatatttgatgtttt 4434847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 432 - 555
Target Start/End: Original strand, 22528023 - 22528149
Alignment:
Q  432 tttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttggaaaacaca--at- 528  Q
    |||||| |||||| ||||||| |||| |||||||  ||||||||||||||| ||||| || | || |  ||| |||||| |||||| ||||||||  ||     
T  22528023 tttgatattttaggacttcaattatactccaaaatatttgatgttttagtacatttaataattttattccaaatttacctttgttgaaaaacacaccata 22528122  T
Q  529 aaactattaaagtagttgtgacctttg 555  Q
    |||||||||||  ||||||||||||||    
T  22528123 aaactattaaaagagttgtgacctttg 22528149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 412 - 444
Target Start/End: Original strand, 12398947 - 12398979
Alignment:
Q  412 actccctccattccttttcttttgatgttttag 444  Q
    |||||||||||||||||||||||||||||||||    
T  12398947 actccctccattccttttcttttgatgttttag 12398979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 412 - 444
Target Start/End: Complemental strand, 29875230 - 29875198
Alignment:
Q  412 actccctccattccttttcttttgatgttttag 444  Q
    |||||||||||||||||||||||||||||||||    
T  29875230 actccctccattccttttcttttgatgttttag 29875198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 412 - 444
Target Start/End: Original strand, 42757806 - 42757838
Alignment:
Q  412 actccctccattccttttcttttgatgttttag 444  Q
    |||||||||||||||||||||||||||||||||    
T  42757806 actccctccattccttttcttttgatgttttag 42757838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 412 - 444
Target Start/End: Complemental strand, 42793594 - 42793562
Alignment:
Q  412 actccctccattccttttcttttgatgttttag 444  Q
    |||||||||||||||||||||||||||||||||    
T  42793594 actccctccattccttttcttttgatgttttag 42793562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 412 - 443
Target Start/End: Complemental strand, 23090574 - 23090543
Alignment:
Q  412 actccctccattccttttcttttgatgtttta 443  Q
    ||||||||||||||||||||||||||||||||    
T  23090574 actccctccattccttttcttttgatgtttta 23090543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 412 - 443
Target Start/End: Original strand, 41610374 - 41610405
Alignment:
Q  412 actccctccattccttttcttttgatgtttta 443  Q
    ||||||||||||||||||||||||||||||||    
T  41610374 actccctccattccttttcttttgatgtttta 41610405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 426 - 460
Target Start/End: Complemental strand, 594362 - 594328
Alignment:
Q  426 ttttcttttgatgttttagaacttcaactatattc 460  Q
    |||||||||||||||||| ||||||||||||||||    
T  594362 ttttcttttgatgttttaaaacttcaactatattc 594328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 414 - 480
Target Start/End: Original strand, 8718028 - 8718094
Alignment:
Q  414 tccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttag 480  Q
    |||||||||| ||||||||||||| |||||  | ||||||| |||| |||||  |||||||||||||    
T  8718028 tccctccatttcttttcttttgatattttaagatttcaactttatttcaaaatatttgatgttttag 8718094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 412 - 522
Target Start/End: Original strand, 19574687 - 19574795
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccc 511  Q
    ||||||||||||  || |||||||||||||||| ||||||| || ||| |||||  ||| |||||||| || ||||| |||| ||||| |||| | ||||    
T  19574687 actccctccattt-ttgtcttttgatgttttaggacttcaattaaatttcaaaatatttaatgttttaatatatttaatatt-ttttcccaaggtcaccc 19574784  T
Q  512 ttgttggaaaa 522  Q
    |||||| ||||    
T  19574785 ttgttgaaaaa 19574795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 412 - 444
Target Start/End: Complemental strand, 34208814 - 34208782
Alignment:
Q  412 actccctccattccttttcttttgatgttttag 444  Q
    |||||||||||||||||| ||||||||||||||    
T  34208814 actccctccattcctttttttttgatgttttag 34208782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 136; Significance: 1e-70; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 412 - 555
Target Start/End: Original strand, 18996968 - 18997111
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccc 511  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  18996968 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttaccc 18997067  T
Q  512 ttgttggaaaacacaataaactattaaagtagttgtgacctttg 555  Q
    ||||||||||||||||||||||||||||||||||||||| ||||    
T  18997068 ttgttggaaaacacaataaactattaaagtagttgtgacttttg 18997111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 412 - 555
Target Start/End: Original strand, 18999507 - 18999650
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccc 511  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  18999507 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttaccc 18999606  T
Q  512 ttgttggaaaacacaataaactattaaagtagttgtgacctttg 555  Q
    ||||||||||||||||||||||||||||||||||||||| ||||    
T  18999607 ttgttggaaaacacaataaactattaaagtagttgtgacttttg 18999650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 412 - 555
Target Start/End: Complemental strand, 29371814 - 29371671
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccc 511  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  29371814 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttaccc 29371715  T
Q  512 ttgttggaaaacacaataaactattaaagtagttgtgacctttg 555  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  29371714 ttgttggaaaacacaataaactattaaagtacttgtgacctttg 29371671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 412 - 555
Target Start/End: Complemental strand, 32677753 - 32677610
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccc 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  32677753 actccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttctcaagtttaccc 32677654  T
Q  512 ttgttggaaaacacaataaactattaaagtagttgtgacctttg 555  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  32677653 ttgttggaaaacacaataaactattaaagtagttgtgacctttg 32677610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 412 - 555
Target Start/End: Original strand, 39528750 - 39528893
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccc 511  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  39528750 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctcaagtttaccc 39528849  T
Q  512 ttgttggaaaacacaataaactattaaagtagttgtgacctttg 555  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  39528850 ttgttggaaaacacaataaactattaaagtagttgtgacctttg 39528893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 412 - 554
Target Start/End: Complemental strand, 1352272 - 1352130
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccc 511  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  1352272 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctcaagtttaccc 1352173  T
Q  512 ttgttggaaaacacaataaactattaaagtagttgtgaccttt 554  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  1352172 ttgttggaaaacacaataaactattaaagtagttgtgaccttt 1352130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 412 - 555
Target Start/End: Complemental strand, 41349647 - 41349504
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccc 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  41349647 actccctccattccttttcttttgatgttttagaacttcaactatattctaaaacttttgatgttttagtgaatttgttattgttttctcaagtttaccc 41349548  T
Q  512 ttgttggaaaacacaataaactattaaagtagttgtgacctttg 555  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  41349547 ttgttggaaaacacaataaactattaaagtagttgtgacctttg 41349504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 412 - 555
Target Start/End: Original strand, 28228437 - 28228580
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccc 511  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  28228437 actctctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttaccc 28228536  T
Q  512 ttgttggaaaacacaataaactattaaagtagttgtgacctttg 555  Q
    ||||||||||| |||||||||||||||||||| |||||| ||||    
T  28228537 ttgttggaaaatacaataaactattaaagtagctgtgacatttg 28228580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 416 - 555
Target Start/End: Complemental strand, 39807251 - 39807112
Alignment:
Q  416 cctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgt 515  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||    
T  39807251 cctccattccttttcttttgatgttttagaacttcaactatattacaaaacttttgatgttttagtgaatttgttattgttttctcaagtttaccctcgt 39807152  T
Q  516 tggaaaacacaataaactattaaagtagttgtgacctttg 555  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  39807151 tggaaaacacaataaactattaaagtagttgtgacctttg 39807112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 412 - 555
Target Start/End: Original strand, 55365909 - 55366052
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccc 511  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||| |||||||||||||||||||||||||||||    
T  55365909 actcccttcattccttttcttttgatgttttagaacttcaactatatttcaaattttttgatgttttagtgaatttattattgttttctcaagtttaccc 55366008  T
Q  512 ttgttggaaaacacaataaactattaaagtagttgtgacctttg 555  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  55366009 ttgttagaaaacacaataaactattaaagtagttgtgacctttg 55366052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 414 - 555
Target Start/End: Original strand, 21974152 - 21974293
Alignment:
Q  414 tccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccctt 513  Q
    |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||    
T  21974152 tccctccatttcttttcttttgatgttttagaatttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaggtttaccttt 21974251  T
Q  514 gttggaaaacacaataaactattaaagtagttgtgacctttg 555  Q
    |||||||||||| ||||| |||||||||||||||||||||||    
T  21974252 gttggaaaacaccataaaatattaaagtagttgtgacctttg 21974293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 414 - 555
Target Start/End: Original strand, 21996583 - 21996724
Alignment:
Q  414 tccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccctt 513  Q
    |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||    
T  21996583 tccctccatttcttttcttttgatgttttagaatttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaggtttaccttt 21996682  T
Q  514 gttggaaaacacaataaactattaaagtagttgtgacctttg 555  Q
    |||||||||||| ||||| |||||||||||||||||||||||    
T  21996683 gttggaaaacaccataaaatattaaagtagttgtgacctttg 21996724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 420 - 555
Target Start/End: Complemental strand, 36738102 - 36737967
Alignment:
Q  420 cattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttgga 519  Q
    |||||||||||||||||||||||||||||| |||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  36738102 cattccttttcttttgatgttttagaactttaactatattttaaaacttttgatgttttagtgaatttattattgttttctcaagtttactcttgttgga 36738003  T
Q  520 aaacacaataaactattaaagtagttgtgacctttg 555  Q
    ||||||||||||||||||||||||||||||| ||||    
T  36738002 aaacacaataaactattaaagtagttgtgacatttg 36737967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 417 - 555
Target Start/End: Original strand, 38855323 - 38855461
Alignment:
Q  417 ctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgtt 516  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||    
T  38855323 ctccattccttttcttttgatgttttaaaacatcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaattttatccttgtt 38855422  T
Q  517 ggaaaacacaataaactattaaagtagttgtgacctttg 555  Q
    | ||||||| |||||||||||||||||||||||||||||    
T  38855423 gaaaaacaccataaactattaaagtagttgtgacctttg 38855461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 414 - 555
Target Start/End: Original strand, 22157261 - 22157402
Alignment:
Q  414 tccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccctt 513  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||| ||||||| ||    
T  22157261 tccctccatttcttttcttttgatgttttagaacttcaactatattctaaaacttttgatattttagtgaatttattattgttttctcaggtttaccttt 22157360  T
Q  514 gttggaaaacacaataaactattaaagtagttgtgacctttg 555  Q
    |||||||||||| ||||| |||||||||||||||||||||||    
T  22157361 gttggaaaacaccataaaatattaaagtagttgtgacctttg 22157402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 418 - 546
Target Start/End: Complemental strand, 29014960 - 29014832
Alignment:
Q  418 tccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttg 517  Q
    ||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  29014960 tccattctttttttttttatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttacccttgttg 29014861  T
Q  518 gaaaacacaataaactattaaagtagttg 546  Q
    ||||||||| |||||||||||||||||||    
T  29014860 gaaaacacattaaactattaaagtagttg 29014832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 426 - 555
Target Start/End: Original strand, 39518422 - 39518551
Alignment:
Q  426 ttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttggaaaacac 525  Q
    |||| ||||||||||||| ||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  39518422 tttttttttgatgttttaaaacttcaactatatttcaaaacttttgatattttagtgaatttattattgttttctcaagtttatccttgttggaaaacac 39518521  T
Q  526 aataaactattaaagtagttgtgacctttg 555  Q
    |||||||||||||||||||| |||| ||||    
T  39518522 aataaactattaaagtagttatgacatttg 39518551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 412 - 555
Target Start/End: Original strand, 32839950 - 32840092
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccc 511  Q
    ||||||||||||| ||||||||| || |||||||||||||||||||||  |||  ||||||||||||||| || |||||||| |||||| ||||||  ||    
T  32839950 actccctccattcattttctttttatattttagaacttcaactatattttaaattttttgatgttttagtgaa-ttattattattttcttaagtttgtcc 32840048  T
Q  512 ttgttggaaaacacaataaactattaaagtagttgtgacctttg 555  Q
    ||||| |||||||||||||||||||||| |||||||||| ||||    
T  32840049 ttgttagaaaacacaataaactattaaaatagttgtgacatttg 32840092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 426 - 555
Target Start/End: Complemental strand, 49041107 - 49040977
Alignment:
Q  426 ttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttggaaaaca- 524  Q
    ||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||| ||||| |||  ||||| || |||||||||||||| ||||||     
T  49041107 ttttcttttgatgttttagaacttcaactatgttccaaaatatttgatgttttagtatatttaatat--ttttcccacgtttacccttgttgaaaaacaa 49041010  T
Q  525 --caataaactattaaagtagttgtgacctttg 555  Q
      ||  |||||||||||| ||||| ||||||||    
T  49041009 accataaaactattaaaggagttgggacctttg 49040977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 416 - 480
Target Start/End: Original strand, 49319352 - 49319416
Alignment:
Q  416 cctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttag 480  Q
    |||||||||||||||||||||||||||||||||| ||||  |||| |||| ||||||||||||||    
T  49319352 cctccattccttttcttttgatgttttagaacttaaacttcattctaaaaattttgatgttttag 49319416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 412 - 444
Target Start/End: Original strand, 1351997 - 1352029
Alignment:
Q  412 actccctccattccttttcttttgatgttttag 444  Q
    |||||||||||||||||||||||||||||||||    
T  1351997 actccctccattccttttcttttgatgttttag 1352029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 412 - 444
Target Start/End: Complemental strand, 18997243 - 18997211
Alignment:
Q  412 actccctccattccttttcttttgatgttttag 444  Q
    |||||||||||||||||||||||||||||||||    
T  18997243 actccctccattccttttcttttgatgttttag 18997211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 412 - 444
Target Start/End: Complemental strand, 18999782 - 18999750
Alignment:
Q  412 actccctccattccttttcttttgatgttttag 444  Q
    |||||||||||||||||||||||||||||||||    
T  18999782 actccctccattccttttcttttgatgttttag 18999750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 412 - 444
Target Start/End: Original strand, 29014691 - 29014723
Alignment:
Q  412 actccctccattccttttcttttgatgttttag 444  Q
    |||||||||||||||||||||||||||||||||    
T  29014691 actccctccattccttttcttttgatgttttag 29014723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 412 - 444
Target Start/End: Original strand, 36737835 - 36737867
Alignment:
Q  412 actccctccattccttttcttttgatgttttag 444  Q
    |||||||||||||||||||||||||||||||||    
T  36737835 actccctccattccttttcttttgatgttttag 36737867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 412 - 444
Target Start/End: Complemental strand, 38855593 - 38855561
Alignment:
Q  412 actccctccattccttttcttttgatgttttag 444  Q
    |||||||||||||||||||||||||||||||||    
T  38855593 actccctccattccttttcttttgatgttttag 38855561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 412 - 444
Target Start/End: Complemental strand, 39518683 - 39518651
Alignment:
Q  412 actccctccattccttttcttttgatgttttag 444  Q
    |||||||||||||||||||||||||||||||||    
T  39518683 actccctccattccttttcttttgatgttttag 39518651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 412 - 444
Target Start/End: Complemental strand, 39529025 - 39528993
Alignment:
Q  412 actccctccattccttttcttttgatgttttag 444  Q
    |||||||||||||||||||||||||||||||||    
T  39529025 actccctccattccttttcttttgatgttttag 39528993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 412 - 444
Target Start/End: Original strand, 41349372 - 41349404
Alignment:
Q  412 actccctccattccttttcttttgatgttttag 444  Q
    |||||||||||||||||||||||||||||||||    
T  41349372 actccctccattccttttcttttgatgttttag 41349404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 436 - 523
Target Start/End: Original strand, 837370 - 837455
Alignment:
Q  436 atgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttggaaaac 523  Q
    |||||||||||||||||||| |||| |||| ||||||| |||||||| | ||| |||| |||| |||||||||||  ||||| |||||    
T  837370 atgttttagaacttcaactaaattctaaaa-ttttgatattttagtataattaatatt-ttttttcaagtttacctgtgttgaaaaac 837455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 412 - 443
Target Start/End: Complemental strand, 46879011 - 46878980
Alignment:
Q  412 actccctccattccttttcttttgatgtttta 443  Q
    ||||||||||||||||||||||||||||||||    
T  46879011 actccctccattccttttcttttgatgtttta 46878980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 412 - 444
Target Start/End: Original strand, 29371539 - 29371571
Alignment:
Q  412 actccctccattccttttcttttgatgttttag 444  Q
    ||||||||||||| |||||||||||||||||||    
T  29371539 actccctccattcattttcttttgatgttttag 29371571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 412 - 444
Target Start/End: Original strand, 32677478 - 32677510
Alignment:
Q  412 actccctccattccttttcttttgatgttttag 444  Q
    ||||||||||||| |||||||||||||||||||    
T  32677478 actccctccattcattttcttttgatgttttag 32677510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 417 - 517
Target Start/End: Complemental strand, 34667762 - 34667662
Alignment:
Q  417 ctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgtt 516  Q
    ||||||| | |||||||||||||||||| ||||||||| || | |||||  |||||| |||||| |  |||  |||| |||  |||| ||||||||||||    
T  34667762 ctccatttcgtttcttttgatgttttaggacttcaactttaattcaaaatatttgatcttttagaatgtttgatattttttattcaattttacccttgtt 34667663  T
Q  517 g 517  Q
    |    
T  34667662 g 34667662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 412 - 444
Target Start/End: Original strand, 39806980 - 39807012
Alignment:
Q  412 actccctccattccttttcttttgatgttttag 444  Q
    ||||||| |||||||||||||||||||||||||    
T  39806980 actcccttcattccttttcttttgatgttttag 39807012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 132; Significance: 3e-68; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 412 - 555
Target Start/End: Original strand, 47669120 - 47669263
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccc 511  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||    
T  47669120 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaatttttgatgttttagtgaatttgttattgttttctcaagtttaccc 47669219  T
Q  512 ttgttggaaaacacaataaactattaaagtagttgtgacctttg 555  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  47669220 ttgttggaaaacacaataaactattaaagtagttgtgacctttg 47669263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 412 - 554
Target Start/End: Original strand, 46220260 - 46220402
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccc 511  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  46220260 actccctctattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctcaagtttaccc 46220359  T
Q  512 ttgttggaaaacacaataaactattaaagtagttgtgaccttt 554  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  46220360 ttgttggaaaacacaataaactattaaagtagttgtgaccttt 46220402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 412 - 555
Target Start/End: Complemental strand, 10737977 - 10737834
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccc 511  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  10737977 actcccttcattccttttcttttaatgttttagaacttcaactatattctaaaacttttgatgttttagtgaatttattattgttttctcaagtttaccc 10737878  T
Q  512 ttgttggaaaacacaataaactattaaagtagttgtgacctttg 555  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  10737877 ttgttggaaaacacaataaactattaaagtagttgtgacctttg 10737834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 412 - 549
Target Start/End: Original strand, 4817270 - 4817407
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccc 511  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  4817270 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttatcattgttttctcaagtttaccc 4817369  T
Q  512 ttgttggaaaacacaataaactattaaagtagttgtga 549  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  4817370 ttgttggaaaacacaataaactattaaggtagttgtga 4817407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 412 - 555
Target Start/End: Original strand, 9831504 - 9831647
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccc 511  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||    
T  9831504 actccctccattccttttcttttgatgttttagaatttcaactatattccaaaacttttgatgttttagtgaatttgttattattttctcaagtttaccc 9831603  T
Q  512 ttgttggaaaacacaataaactattaaagtagttgtgacctttg 555  Q
    |||||||||||||||||||||||||||| |||||||||||||||    
T  9831604 ttgttggaaaacacaataaactattaaaatagttgtgacctttg 9831647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 412 - 555
Target Start/End: Original strand, 18126852 - 18126994
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccc 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  18126852 actccctccattccttttcttttgatgttttagaacttcaactatattctaaaacttttgatgttttagtgaatttattattgttttctcaagtttaccc 18126951  T
Q  512 ttgttggaaaacacaataaactattaaagtagttgtgacctttg 555  Q
    |||||||||||||||| |||||||| ||||||||||||| ||||    
T  18126952 ttgttggaaaacacaacaaactatt-aagtagttgtgacttttg 18126994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 412 - 555
Target Start/End: Complemental strand, 3384869 - 3384728
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccc 511  Q
    ||||||| ||||| |||||||||||||||||||||| |||||||| |  ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  3384869 actcccttcattctttttcttttgatgttttagaacctcaactattt--caaaacttttgatgttttagtgaatttattattgttttctcaagtttaccc 3384772  T
Q  512 ttgttggaaaacacaataaactattaaagtagttgtgacctttg 555  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  3384771 ttgttggaaaacacaataaactattaaagtagttgtgacctttg 3384728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 412 - 547
Target Start/End: Original strand, 4055485 - 4055620
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccc 511  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  4055485 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaattaattattgttttctcaagtttaccc 4055584  T
Q  512 ttgttggaaaacacaataaactattaaagtagttgt 547  Q
    || ||||||||||||||  ||| |||||||||||||    
T  4055585 ttattggaaaacacaattcactgttaaagtagttgt 4055620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 412 - 555
Target Start/End: Original strand, 48564819 - 48564961
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccc 511  Q
    |||||||||||| ||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  48564819 actccctccattacttttcttt-gatgttttaaaacttcaactatattccaaaaattttgatgttttagtgaatttattattgttttctcaagtttaccc 48564917  T
Q  512 ttgttggaaaacacaataaactattaaagtagttgtgacctttg 555  Q
    ||| ||||||||||||||||||||||||||||||||||| ||||    
T  48564918 ttgatggaaaacacaataaactattaaagtagttgtgacttttg 48564961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 426 - 550
Target Start/End: Original strand, 8889457 - 8889581
Alignment:
Q  426 ttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttggaaaacac 525  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  8889457 ttttttttttatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttacccttgttgaaaaacac 8889556  T
Q  526 aataaactattaaagtagttgtgac 550  Q
    |||||||||||||||||||||||||    
T  8889557 aataaactattaaagtagttgtgac 8889581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 412 - 555
Target Start/End: Original strand, 7414208 - 7414351
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccc 511  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||||  |||  ||||||||||||||| |||||||||||||||||||||||||||||    
T  7414208 actccctccattcatttttttttgatgttttagaacttcaactatattttaaattttttgatgttttagtgaatttattattgttttctcaagtttaccc 7414307  T
Q  512 ttgttggaaaacacaataaactattaaagtagttgtgacctttg 555  Q
    |||||| |||||||||||||||||||||||||||||||| ||||    
T  7414308 ttgttgaaaaacacaataaactattaaagtagttgtgacatttg 7414351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 412 - 513
Target Start/End: Complemental strand, 1236306 - 1236205
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccc 511  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  1236306 actccctccattcattttcttttgatgttttagaactttaactatattccaaaacttttgatggtttagtgaatttattattgttttctcaagtttaccc 1236207  T
Q  512 tt 513  Q
    ||    
T  1236206 tt 1236205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 431 - 555
Target Start/End: Original strand, 39241172 - 39241296
Alignment:
Q  431 ttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaag-tttacccttgttggaaaacacaata 529  Q
    |||| ||||||||||| |||||||||||| ||||||||||| ||||| ||| |||||||||||||| | ||||| ||||| ||||||| ||||||| |||    
T  39241172 ttttaatgttttagaa-ttcaactatatttcaaaacttttgttgtttcagtgaatttattattgttgtatcaagttttactcttgttgaaaaacaccata 39241270  T
Q  530 aactattaaagtagttgtgacctttg 555  Q
    ||||||||||||||||||||| ||||    
T  39241271 aactattaaagtagttgtgacttttg 39241296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 416 - 490
Target Start/End: Complemental strand, 1749595 - 1749521
Alignment:
Q  416 cctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttatt 490  Q
    |||| ||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||| ||||||||    
T  1749595 cctctattccttttcttttgatgttttagaactttaattatataccaaaacttttgatgttttagtgaatttatt 1749521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 412 - 480
Target Start/End: Original strand, 33020207 - 33020275
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttag 480  Q
    |||||||||||||||||||||||||||||||||| ||| |||| | |||||||||||||||||||||||    
T  33020207 actccctccattccttttcttttgatgttttagagcttaaacttttttccaaaacttttgatgttttag 33020275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 434 - 526
Target Start/End: Original strand, 26842462 - 26842552
Alignment:
Q  434 tgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttggaaaacaca 526  Q
    |||||||||||||||||||||||||| |||||  ||||||||||||||| ||||| |||  |||| ||||||||| |||||||| ||||||||    
T  26842462 tgatgttttagaacttcaactatatttcaaaatatttgatgttttagtatatttaatat--ttttttcaagtttatccttgttgaaaaacaca 26842552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 412 - 526
Target Start/End: Complemental strand, 33846934 - 33846820
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaattt-attattgttttctcaagtttacc 510  Q
    ||||||||||||  ||||||||||||||||||  ||||||| | ||||  ||||  |||||||||| |||| |||| ||| || ||| ||||||||||||    
T  33846934 actccctccattt-ttttcttttgatgttttaagacttcaagtgtattttaaaatatttgatgtttcagtatatttaatttttttttcctcaagtttacc 33846836  T
Q  511 cttgttggaaaacaca 526  Q
    ||||||  ||||||||    
T  33846835 cttgttaaaaaacaca 33846820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 412 - 526
Target Start/End: Original strand, 33947044 - 33947158
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaattt-attattgttttctcaagtttacc 510  Q
    ||||||||||||  ||||||||||||||||||  ||||||| | ||||  ||||  |||||||||| |||| |||| ||| || ||| ||||||||||||    
T  33947044 actccctccattt-ttttcttttgatgttttaagacttcaagtgtattttaaaatatttgatgtttcagtatatttaatttttttttcctcaagtttacc 33947142  T
Q  511 cttgttggaaaacaca 526  Q
    ||||||  ||||||||    
T  33947143 cttgttaaaaaacaca 33947158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 468 - 539
Target Start/End: Original strand, 37875849 - 37875920
Alignment:
Q  468 tttgatgttttagtaaatttattattgttttctcaagtttacccttgttggaaaacacaataaactattaaa 539  Q
    ||||||||||||||| ||||| | ||||||||||||||||| |||||||| |||| |||  | |||||||||    
T  37875849 tttgatgttttagtatatttaatgttgttttctcaagtttatccttgttgaaaaatacaccatactattaaa 37875920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 412 - 444
Target Start/End: Original strand, 1236071 - 1236103
Alignment:
Q  412 actccctccattccttttcttttgatgttttag 444  Q
    |||||||||||||||||||||||||||||||||    
T  1236071 actccctccattccttttcttttgatgttttag 1236103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 412 - 444
Target Start/End: Original strand, 10737702 - 10737734
Alignment:
Q  412 actccctccattccttttcttttgatgttttag 444  Q
    |||||||||||||||||||||||||||||||||    
T  10737702 actccctccattccttttcttttgatgttttag 10737734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 412 - 444
Target Start/End: Complemental strand, 46220535 - 46220503
Alignment:
Q  412 actccctccattccttttcttttgatgttttag 444  Q
    |||||||||||||||||||||||||||||||||    
T  46220535 actccctccattccttttcttttgatgttttag 46220503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 412 - 444
Target Start/End: Complemental strand, 47669395 - 47669363
Alignment:
Q  412 actccctccattccttttcttttgatgttttag 444  Q
    |||||||||||||||||||||||||||||||||    
T  47669395 actccctccattccttttcttttgatgttttag 47669363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 426 - 526
Target Start/End: Complemental strand, 49112535 - 49112439
Alignment:
Q  426 ttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttggaaaacac 525  Q
    |||||||||||||||    ||||| |||||||||  ||||  ||||||||||||||| |||||  ||||||||   || ||||||||||||| |||||||    
T  49112535 ttttcttttgatgtt----aactttaactatattttaaaatatttgatgttttagtatatttaacattgtttttctaaatttacccttgttgaaaaacac 49112440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 414 - 444
Target Start/End: Complemental strand, 9831777 - 9831747
Alignment:
Q  414 tccctccattccttttcttttgatgttttag 444  Q
    |||||||||||||||||||||||||||||||    
T  9831777 tccctccattccttttcttttgatgttttag 9831747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 412 - 442
Target Start/End: Complemental strand, 48565093 - 48565063
Alignment:
Q  412 actccctccattccttttcttttgatgtttt 442  Q
    |||||||||||||||||||||||||||||||    
T  48565093 actccctccattccttttcttttgatgtttt 48565063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 412 - 444
Target Start/End: Complemental strand, 8889719 - 8889687
Alignment:
Q  412 actccctccattccttttcttttgatgttttag 444  Q
    |||||||||||||||||| ||||||||||||||    
T  8889719 actccctccattccttttattttgatgttttag 8889687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 412 - 444
Target Start/End: Complemental strand, 33023460 - 33023428
Alignment:
Q  412 actccctccattccttttcttttgatgttttag 444  Q
    ||||||||||||||||||||||||| |||||||    
T  33023460 actccctccattccttttcttttgacgttttag 33023428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 412 - 444
Target Start/End: Original strand, 37875728 - 37875760
Alignment:
Q  412 actccctccattccttttcttttgatgttttag 444  Q
    |||||||||||| ||||||||||||||||||||    
T  37875728 actccctccatttcttttcttttgatgttttag 37875760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 120; Significance: 4e-61; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 412 - 555
Target Start/End: Original strand, 45590743 - 45590886
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccc 511  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||| |||||||||||     
T  45590743 actccctccattcattttcttttgatgttttagaacttcaactatattctaaaacttttgatgttttagtgaattcattattgttttatcaagtttacct 45590842  T
Q  512 ttgttggaaaacacaataaactattaaagtagttgtgacctttg 555  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  45590843 ttgttggaaaacacaataaactattaaagtagttgtgacctttg 45590886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 412 - 555
Target Start/End: Complemental strand, 8956052 - 8955909
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccc 511  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||| ||||||||||||    
T  8956052 actccctccattcctttttttttgatgttttagaacttcaactatattacaaaacttttgatgttttagtgaatttgttattgttttatcaagtttaccc 8955953  T
Q  512 ttgttggaaaacacaataaactattaaagtagttgtgacctttg 555  Q
    || ||||||||||||||||| |||||||||||||||||||||||    
T  8955952 ttattggaaaacacaataaattattaaagtagttgtgacctttg 8955909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 421 - 555
Target Start/End: Original strand, 34334342 - 34334476
Alignment:
Q  421 attccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttggaa 520  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||| ||    
T  34334342 attccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgctttagtgaatttattattgtcttctcaagtttacccttgttgaaa 34334441  T
Q  521 aacacaataaactattaaagtagttgtgacctttg 555  Q
    ||||||||||||||||||||||||||||| |||||    
T  34334442 aacacaataaactattaaagtagttgtgatctttg 34334476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 412 - 555
Target Start/End: Complemental strand, 33288681 - 33288538
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccc 511  Q
    |||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  33288681 actccctccatttcttttcttttgatattttagaacttcaattatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttaccc 33288582  T
Q  512 ttgttggaaaacacaataaactattaaagtagttgtgacctttg 555  Q
     ||||||||||||||||| |||  ||||||||||||||| ||||    
T  33288581 atgttggaaaacacaatatactgataaagtagttgtgacatttg 33288538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 417 - 555
Target Start/End: Original strand, 49162108 - 49162245
Alignment:
Q  417 ctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgtt 516  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||| |||||||    
T  49162108 ctccattcattttcttttgatgtttcagaacttcaactatattccaaaatttttgatgttttagtgaatttattattgttttctcaatttta-ccttgtt 49162206  T
Q  517 ggaaaacacaataaactattaaagtagttgtgacctttg 555  Q
    ||||||||| ||||||||||||||||||||| |||||||    
T  49162207 ggaaaacaccataaactattaaagtagttgtaacctttg 49162245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 412 - 555
Target Start/End: Original strand, 18835706 - 18835851
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagt--aaatttattattgttttctcaagtttac 509  Q
    ||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||||||  | || ||||||||||||||||| ||||     
T  18835706 actcccttcatttattttcttttgatgttttagaacttcaactatattccaaaactttcgatgttttagtgaatatatattattgttttctcaaatttat 18835805  T
Q  510 ccttgttggaaaacacaataaactattaaagtagttgtgacctttg 555  Q
    ||||||| |||||||  |||||||||||||||||||||||| ||||    
T  18835806 ccttgttagaaaacatcataaactattaaagtagttgtgacatttg 18835851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 414 - 510
Target Start/End: Original strand, 39481906 - 39482002
Alignment:
Q  414 tccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 510  Q
    |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  39481906 tccctccatttcttttcttttgatgttttagaacttcaactattttccaaaacttttgatgttttagtaaatttattattgttttctcaggtttacc 39482002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 412 - 503
Target Start/End: Complemental strand, 30469444 - 30469353
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaa 503  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  30469444 actcccttcattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaa 30469353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 426 - 555
Target Start/End: Complemental strand, 50774325 - 50774191
Alignment:
Q  426 ttttcttttgatgttttagaacttcaactatattccaaaacttttgatg-----ttttagtaaatttattattgttttctcaagtttacccttgttggaa 520  Q
    |||| ||||||||||||||||||| ||||||||| |||||||||||||      ||||||| ||||||||||||||||||||||||||| ||||||||||    
T  50774325 tttttttttgatgttttagaactttaactatatttcaaaacttttgatacagtattttagtgaatttattattgttttctcaagtttactcttgttggaa 50774226  T
Q  521 aacacaataaactattaaagtagttgtgacctttg 555  Q
    ||||||||||||||||||| |||| ||||| ||||    
T  50774225 aacacaataaactattaaattagtcgtgacttttg 50774191  T

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Target: chr4; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 477 - 555
Target Start/End: Original strand, 36971115 - 36971192
Alignment:
Q  477 ttagtaaatttattattgttttctcaagtttacccttgttggaaaacacaataaactattaaagtagttgtgacctttg 555  Q
    ||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  36971115 ttagtgaatttattattgttttctgaagtttacc-ttgttggaaaacacaataaactattaaaatagttgtgacctttg 36971192  T

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Target: chr4; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 412 - 480
Target Start/End: Original strand, 19256187 - 19256255
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttag 480  Q
    |||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||    
T  19256187 actccctccattccttttcttttgatgttttagagcttaaactttattccaaaacttttgatgttttag 19256255  T

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Target: chr4; HSP #12
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 426 - 526
Target Start/End: Complemental strand, 26025784 - 26025685
Alignment:
Q  426 ttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttggaaaacac 525  Q
    ||||||||||||||||||| ||||||||||||||||||||  |||||  |||||||| ||||| |||| ||||| ||||||||||||||||| |||||||    
T  26025784 ttttcttttgatgttttaggacttcaactatattccaaaatatttgacattttagtatatttaatatt-ttttcccaagtttacccttgttgaaaaacac 26025686  T

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Target: chr4; HSP #13
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 426 - 480
Target Start/End: Original strand, 36968353 - 36968407
Alignment:
Q  426 ttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttag 480  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36968353 tttttttttgatgttttagaacttcaactatattccaaaacttttgatgttttag 36968407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 426 - 555
Target Start/End: Complemental strand, 33109163 - 33109031
Alignment:
Q  426 ttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttggaaaacac 525  Q
    ||||||||| ||||||||| ||||||||||||||  ||||   |||||||||||||| ||||| |||| |||||| ||||||| |||||||  |||||||    
T  33109163 ttttcttttaatgttttaggacttcaactatattttaaaataattgatgttttagtatatttaatatttttttcttaagtttatccttgttaaaaaacac 33109064  T
Q  526 a--at-aaactattaaagtagttgtgacctttg 555  Q
    |  || |||||||||||  ||||||||||||||    
T  33109063 accataaaactattaaatgagttgtgacctttg 33109031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 412 - 461
Target Start/End: Original strand, 36016280 - 36016329
Alignment:
Q  412 actccctccattccttttcttttgatgttttagaacttcaactatattcc 461  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36016280 actccctccattccttttcttttgatgttttagaacttcaactatattcc 36016329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 412 - 445
Target Start/End: Complemental strand, 19257136 - 19257103
Alignment:
Q  412 actccctccattccttttcttttgatgttttaga 445  Q
    ||||||||||||||||||||||||||||||||||    
T  19257136 actccctccattccttttcttttgatgttttaga 19257103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 414 - 444
Target Start/End: Original strand, 8955779 - 8955809
Alignment:
Q  414 tccctccattccttttcttttgatgttttag 444  Q
    |||||||||||||||||||||||||||||||    
T  8955779 tccctccattccttttcttttgatgttttag 8955809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 412 - 444
Target Start/End: Complemental strand, 39482138 - 39482106
Alignment:
Q  412 actccctccattccttttcttttgatgttttag 444  Q
    |||||||||||| ||||||||||||||||||||    
T  39482138 actccctccatttcttttcttttgatgttttag 39482106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 412 - 444
Target Start/End: Complemental strand, 45591018 - 45590986
Alignment:
Q  412 actccctccattccttttcttttgatgttttag 444  Q
    ||||||||||||| |||||||||||||||||||    
T  45591018 actccctccattcattttcttttgatgttttag 45590986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 412 - 444
Target Start/End: Complemental strand, 49162364 - 49162332
Alignment:
Q  412 actccctccattccttttcttttgatgttttag 444  Q
    |||||||||||||| ||||||||||||||||||    
T  49162364 actccctccattccctttcttttgatgttttag 49162332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 412 - 555
Target Start/End: Original strand, 44620 - 44764
Alignment:
Q  412 actccctccattccttttcttt-tgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 510  Q
    ||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  44620 actcccttcattccttttctttctgatgtttgagaacttcaactatattccaaaacttttgaggttttagtgaatttattattgttttctcaagtttacc 44719  T
Q  511 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 555  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  44720 cttgttgaaaaacacaataaactattaaagtagttgtgacctttg 44764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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