View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21255_high_6 (Length: 477)
Name: NF21255_high_6
Description: NF21255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21255_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 460
Target Start/End: Original strand, 2442857 - 2443322
Alignment:
| Q |
1 |
aaaaacactattttaacggnnnnnnnnntcgcatagtcatcaaaaacatacaaatttaagcatgtattggaatcaaaatcacctaaaattgactcaaaat |
100 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2442857 |
aaaaacactattttaacggaaaaaaaaatcgcatagtcatcaaaaacatacaaatttaagcatgtattggaatcaaaatcacctaaaattgactcaaaat |
2442956 |
T |
|
| Q |
101 |
atacaattttaagcatct------aattgaatcaaaataacgtaaaatgggctcaaaatttacctagagtttgtccatctttcagtgattttattattca |
194 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2442957 |
atacaattttaagcatctaaatctaattgaatcaaaataacgtaaaatgggctcaaaatttacctagagtttgtccatctttcagtgattttattattca |
2443056 |
T |
|
| Q |
195 |
agcgtttccaccaatccttgtcattctgctgcttctcaacttcgtccataagaatccttcggcgctcattctcccttttcttctcccagtttgatagatt |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2443057 |
agcgtttccaccaatccttgtcattctgctgcttctcaacttcgtccataagaatccttcggcgctcattctcccttttcttctcccagtttgatagatt |
2443156 |
T |
|
| Q |
295 |
aacctaacaagtacaagtaaaaattcaaacacaatccaaaaggccagaaacaatgaagaaatcaaattcattaattaaacatctctgattaagattttac |
394 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2443157 |
aacctaacaagtacaagtaaaaattcaaacacaatccaaaaggccagaaacaatgaagaaatcaaattcattaattaaacatctctgattaagattttac |
2443256 |
T |
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| Q |
395 |
atgatactcttccatttctctctcataattctccaaccttgataacaaattctgaagctctgtagc |
460 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2443257 |
atgatactcttccatttctctctcataattctccaaccttgataacaaattctgaagctctgtagc |
2443322 |
T |
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