View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21255_high_8 (Length: 462)
Name: NF21255_high_8
Description: NF21255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21255_high_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 414; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 14 - 443
Target Start/End: Complemental strand, 8169974 - 8169545
Alignment:
| Q |
14 |
agatcaatcattctaaccattcacttttggtatataaataccaaaatatcttagccatcatcaacatattttggtcatggcaatagatcatgagtcaagg |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8169974 |
agatcaatcattctaaccattcacttttggtatataaataccaaaatatcttagccatcatcaacatattttggtcatggcaatagatcatgagtcaagg |
8169875 |
T |
|
| Q |
114 |
attactctccggccattcaaagaaagtgatgctgacgatgtgttattgtgggcaagtgatgaaagagtcatgcaatatatgcgattggagttatgtaaat |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8169874 |
attactctccggccattcaaagaaagtgatgctgacgatgtgttattgtgggcaagtgatgaaagagtcatgcaatatatgcgattggagttatgtaaat |
8169775 |
T |
|
| Q |
214 |
caagggaacaagctttgaatttcataaaaaatgattgcatttacccattccaacaatcaatatgtcttaatgatcactctattggaattgtttttgtcct |
313 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8169774 |
caagggaacaagcttcgaatttcataaaaaatgattgcatttacccattccaacaatcaatatgtcttaatgatcactctattggaattgtttttgtcct |
8169675 |
T |
|
| Q |
314 |
tccttatcctgatgcaaagtttaaagcagatttaggttatgctattgggttcaactattggggccaaggtgtagctagcaaagcagtgaagattcttttg |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
8169674 |
tccttatcctgatgcaaagtttaaagcagatttaggttatgctattgggtttaactattggggccaaggtgtagccaccaaagcagtgaagattcttttg |
8169575 |
T |
|
| Q |
414 |
tcttgtgtattccaagactttcctgatttg |
443 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
8169574 |
tcttgtgtattccaagactttcctgatttg |
8169545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 25 - 439
Target Start/End: Complemental strand, 8172593 - 8172180
Alignment:
| Q |
25 |
tctaaccattcacttttggtatataaataccaaaatatcttagccatcatcaacatattttggtcatggcaatagatcatgagtcaaggattactctccg |
124 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
8172593 |
tctaaccacacacttttggtgtataaataccaaaatatcttagccat-attaacatattgtggtcatggcaatagatcatgagtcaaggatcactctccg |
8172495 |
T |
|
| Q |
125 |
gccattcaaagaaagtgatgctgacgatgtgttattgtgggcaagtgatgaaagagtcatgcaatatatgcgattggagttatgtaaatcaagggaacaa |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
8172494 |
gccattcaaagaaagtgatgctgacgatgtgttattgtgggcaagtgatgaaagagtcatgcaatatacacgattgaagttatgtaaatcaagggaacaa |
8172395 |
T |
|
| Q |
225 |
gctttgaatttcataaaaaatgattgcatttacccattccaacaatcaatatgtcttaatgatcactctattggaattgtttttgtccttccttatcctg |
324 |
Q |
| |
|
||||||||||||||||| || ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| | || |
|
|
| T |
8172394 |
gctttgaatttcataaagaaagattgtatttacccattccaacaatcaatatgtcttgatgatcactctattggaattgtttttgttcttccaatttctt |
8172295 |
T |
|
| Q |
325 |
atgcaaagtttaaagcagatttaggttatgctattgggttcaactattggggccaaggtgtagctagcaaagcagtgaagattcttttgtcttgtgtatt |
424 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||| |||| | |||||| | ||||||||||||||| | || || |
|
|
| T |
8172294 |
atgcaaagtttaaagcagatttaggttttgctattggattcaattattggggccaaggtatagccacaaaagcacttaagattcttttgtctcgagtgtt |
8172195 |
T |
|
| Q |
425 |
ccaagactttcctga |
439 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
8172194 |
ccaagagtttcctga |
8172180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 223 - 415
Target Start/End: Complemental strand, 8177352 - 8177157
Alignment:
| Q |
223 |
aagctttgaatttcataaaaaatgattgcatttacccattccaacaatcaatatgtcttaatgatcactctattggaattgtttttgtccttccttatcc |
322 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||| ||| ||||||||||||||| |||| ||||| |||||||| |||| | |||||| || | |
|
|
| T |
8177352 |
aagctttggatttcataaaaaatgaatgcatttacccaatccgccaatcaatatgtcttgatgaccactccattggaatggtttggattcttcctcatgc |
8177253 |
T |
|
| Q |
323 |
---tgatgcaaagtttaaagcagatttaggttatgctattgggttcaactattggggccaaggtgtagctagcaaagcagtgaagattcttttgtc |
415 |
Q |
| |
|
||||| || | |||||||||| | |||||||||||||| |||||||||||||| ||||| | || | || ||||||||||||||| |||| |
|
|
| T |
8177252 |
taatgatgagaaatataaagcagatatgggttatgctattggattcaactattggggtcaagggattgccactaatgcagtgaagattcttctgtc |
8177157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University