View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21255_low_10 (Length: 462)
Name: NF21255_low_10
Description: NF21255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21255_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 33 - 449
Target Start/End: Complemental strand, 56240858 - 56240441
Alignment:
| Q |
33 |
agataatatctatctaatctaattctcctatctttctttagtcctcattgcaggatcaatcaatctgccaacaaatcaatcaaaactcaaaggatgattt |
132 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
56240858 |
agataaaatctatctaatctaattctcctatctttctttagtcctcattgcaggatcaatcaatctgccaacaaatcaatcaaaactcaaaggatgatgt |
56240759 |
T |
|
| Q |
133 |
ctcttaggtccactagttctgccactaaggttctcctaaattcttactatgcattcattactcctctttcttacattttcatattccttatcnnnnnnnn |
232 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56240758 |
ctcttaggtccactagttctgccactaaggttctcctaaattcttactatgcattcattactcctctttcttacattttcatattccttatcttttttct |
56240659 |
T |
|
| Q |
233 |
nnnnnaatgtttcacagctcaacacagtcggtcttcaggagcacatacctgtgcaggattcagaacttgttctctctgtcgagatttaccataattttcg |
332 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
56240658 |
tgtttaatgtttcacagctcaacacagtcggtcttcaggagcacatacctgtgcaggattcagaagttgttctctctgtcgagatttaccataattttcg |
56240559 |
T |
|
| Q |
333 |
aaatggtgtcaaggtattcagtgcc-nnnnnnnggtattcaatgccatgcctacataattttgaaaatgtattttggataactactaccatcaaagttaa |
431 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56240558 |
aaatggtgtcaaggtattcagtgccaaaaaaaaggtattcaatgccatgcctacataattttgaaaatgtattttggataactactaccatcaaagttaa |
56240459 |
T |
|
| Q |
432 |
catgtagggcctctgttc |
449 |
Q |
| |
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|||||||||||||||||| |
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| T |
56240458 |
catgtagggcctctgttc |
56240441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 251 - 445
Target Start/End: Complemental strand, 23947048 - 23946842
Alignment:
| Q |
251 |
tcaacacagtcggtcttcaggagcacatacctgtgcaggattcagaacttgttctctctgtcgagatttaccataattttcgaaatggtgtcaaggtatt |
350 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||| ||| |
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| T |
23947048 |
tcaacacactgggtcttcaggagcacatacctgtgcaggattcagaagttgttctctctgtcgagatttaccataattttcgtaaaggtgtcaagctatc |
23946949 |
T |
|
| Q |
351 |
cagtgcc-nnnnnnnggtattcaatgccatgcctacataattttgaaaat---------gt--attttggataactactaccatcaaagttaacatgtag |
438 |
Q |
| |
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|| |||| ||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
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| T |
23946948 |
caatgccaaaaaaaaggtattcaatgtcatgcctacataattttgaaaataataattcagttcattttggataactactaccatcaaagttaacatgtag |
23946849 |
T |
|
| Q |
439 |
ggcctct |
445 |
Q |
| |
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| ||||| |
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|
| T |
23946848 |
gacctct |
23946842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 33 - 156
Target Start/End: Complemental strand, 23947178 - 23947055
Alignment:
| Q |
33 |
agataatatctatctaatctaattctcctatctttctttagtcctcattgcaggatcaatcaatctgccaacaaatcaatcaaaactcaaaggatgattt |
132 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| | |
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|
| T |
23947178 |
agataaaatctatctaatctaattcagctatctttctttagtcctgattgcaggatcaataaatctgccaacaaatcaatcaaaactcaaaggatgatgt |
23947079 |
T |
|
| Q |
133 |
ctcttaggtccactagttctgcca |
156 |
Q |
| |
|
||||||||||||| ||||| |||| |
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|
| T |
23947078 |
ctcttaggtccacaagttccgcca |
23947055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 56240920 - 56240890
Alignment:
| Q |
1 |
tagtaatagtatactattcttcttactcaat |
31 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
56240920 |
tagtaatagtatactattcttcttactcaat |
56240890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 96; Significance: 7e-47; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 33 - 156
Target Start/End: Original strand, 16105766 - 16105889
Alignment:
| Q |
33 |
agataatatctatctaatctaattctcctatctttctttagtcctcattgcaggatcaatcaatctgccaacaaatcaatcaaaactcaaaggatgattt |
132 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
16105766 |
agataacatctatctaatctaattcagctatctttctttagtcctgattgcaggatcaatcaatctgccaacaaatcaatcaaaactcaaaggatgatgt |
16105865 |
T |
|
| Q |
133 |
ctcttaggtccactagttctgcca |
156 |
Q |
| |
|
||||||||||||| ||||| |||| |
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|
| T |
16105866 |
ctcttaggtccacaagttccgcca |
16105889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 251 - 445
Target Start/End: Original strand, 16105896 - 16106102
Alignment:
| Q |
251 |
tcaacacagtcggtcttcaggagcacatacctgtgcaggattcagaacttgttctctctgtcgagatttaccataattttcgaaatggtgtcaaggtatt |
350 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||| ||| |
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|
| T |
16105896 |
tcaacacactgggtcttcaggagcacatacctgtgcaggattcagaagttgttctctctgtcgagattttccataattttcgaaaaggtgtcaagctatc |
16105995 |
T |
|
| Q |
351 |
cagtgcc-nnnnnnnggtattcaatgccatgcctacataattttgaaaat---------gt--attttggataactactaccatcaaagttaacatgtag |
438 |
Q |
| |
|
|| |||| ||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||| |
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| T |
16105996 |
caatgccaaaaaaaaggtattcaatgtcatgcctacataattttgaaaataataattcagttcattttggataactactaccatcaaagttaacatatag |
16106095 |
T |
|
| Q |
439 |
ggcctct |
445 |
Q |
| |
|
| ||||| |
|
|
| T |
16106096 |
gacctct |
16106102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 238 - 350
Target Start/End: Original strand, 16624287 - 16624399
Alignment:
| Q |
238 |
aatgtttcacagctcaacacagtcggtcttcaggagcacatacctgtgcaggattcagaacttgttctctctgtcgagatttaccataattttcgaaatg |
337 |
Q |
| |
|
||||||| ||| ||||||||| || |||||||||||||||||| |||| ||| ||||| ||||||| ||||| ||||||||||||||| ||| ||| | |
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|
| T |
16624287 |
aatgtttgtcaggtcaacacaggaggacttcaggagcacatacctttgcatgatccagaagttgttctttctgtggagatttaccataatgttcaaaaag |
16624386 |
T |
|
| Q |
338 |
gtgtcaaggtatt |
350 |
Q |
| |
|
||||||||||||| |
|
|
| T |
16624387 |
gtgtcaaggtatt |
16624399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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