View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21255_low_12 (Length: 451)

Name: NF21255_low_12
Description: NF21255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21255_low_12
NF21255_low_12
[»] chr6 (9 HSPs)
chr6 (1-434)||(13609351-13609784)
chr6 (272-369)||(33389563-33389660)
chr6 (290-369)||(31561319-31561398)
chr6 (291-369)||(33287033-33287111)
chr6 (287-369)||(33411444-33411526)
chr6 (291-363)||(9168268-9168340)
chr6 (84-152)||(31561110-31561178)
chr6 (287-355)||(33059068-33059136)
chr6 (305-369)||(33305977-33306041)
[»] chr4 (16 HSPs)
chr4 (1-434)||(31245300-31245733)
chr4 (210-375)||(31527888-31528053)
chr4 (287-363)||(31019291-31019367)
chr4 (287-369)||(31029166-31029248)
chr4 (267-375)||(31033496-31033603)
chr4 (287-357)||(31477478-31477548)
chr4 (290-363)||(31158740-31158813)
chr4 (27-152)||(31158951-31159076)
chr4 (27-152)||(31489919-31490044)
chr4 (24-159)||(31019495-31019630)
chr4 (24-159)||(31029376-31029511)
chr4 (272-369)||(31149833-31149930)
chr4 (291-358)||(31502606-31502671)
chr4 (27-57)||(31477218-31477248)
chr4 (27-57)||(31502340-31502370)
chr4 (15-51)||(31033784-31033820)
[»] chr7 (1 HSPs)
chr7 (1-434)||(14724579-14724991)
[»] chr5 (2 HSPs)
chr5 (23-276)||(17598911-17599168)
chr5 (342-434)||(17598771-17598863)
[»] chr2 (1 HSPs)
chr2 (287-371)||(17439335-17439419)
[»] scaffold0428 (1 HSPs)
scaffold0428 (287-357)||(8263-8333)


Alignment Details
Target: chr6 (Bit Score: 426; Significance: 0; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Original strand, 13609351 - 13609784
Alignment:
Q  1 atgtcgaagaaaatcccttgtagttcttgataatgttgataaagttgaacaactggataaactggacataacacgagaatgtctaggttcagggagtaga 100  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13609351 atgtcaaataaaatcccttgtagttcttgataatgttgataaagttgaacaactggataaactggacataacacgagaatgtctaggttcagggagtaga 13609450  T
Q  101 attatcgtaatttctagagatggccatatcttgagagagcatggagtagatgaaatttatgaagtacgagcattagatcttaatgatgcccttcgattgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13609451 attatcgtaatttctagagatggccatatcttgagagagcatggagtagatgaaatttatgaagtacgagcattagatcttaatgatgcccttcgattgt 13609550  T
Q  201 tttgtaggaaagctttcaaaagtgatgatatcttgagtggttatgcagacttgacatatgatgtactaaaatatgctgatggcattccactagcaattga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13609551 tttgtaggaaagctttcaaaagtgatgatatcttgagtggttatgcagacttgacatatgatgtactaaaatatgctgatggcattccactagcaattga 13609650  T
Q  301 agtgttgggctcatttttgtatggtcgagatgtctctgaatggagaagtgcattggccagattaagagagaatcccatggcagaaattatggatgtacta 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13609651 agtgttgggctcatttttgtatggtcgagatgtctctgaatggagaagtgcattggccagattaagagagaatcccatggcagaaattatggatgtacta 13609750  T
Q  401 cggcttagttatgatggactaaaggatatagaaa 434  Q
    ||||||||||||||||||||||||||||||||||    
T  13609751 cggcttagttatgatggactaaaggatatagaaa 13609784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 272 - 369
Target Start/End: Complemental strand, 33389660 - 33389563
Alignment:
Q  272 tatgctgatggcattccactagcaattgaagtgttgggctcatttttgtatggtcgagatgtctctgaatggagaagtgcattggccagattaagaga 369  Q
    |||||| ||||  |||||||||||||| |||| |||||||||||||||| ||||||  ||||  |||||||||  ||||||||||| ||||| |||||    
T  33389660 tatgctaatggtcttccactagcaattaaagtattgggctcatttttgtttggtcgtaatgtgactgaatggaagagtgcattggctagattgagaga 33389563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 369
Target Start/End: Original strand, 31561319 - 31561398
Alignment:
Q  290 ctagcaattgaagtgttgggctcatttttgtatggtcgagatgtctctgaatggagaagtgcattggccagattaagaga 369  Q
    |||||||||  ||| |||||||||||||||| ||||||  ||||  |||||||||  ||||||||| ||||||| |||||    
T  31561319 ctagcaattacagtattgggctcatttttgtttggtcgtaatgtgactgaatggaagagtgcattgtccagattgagaga 31561398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 369
Target Start/End: Complemental strand, 33287111 - 33287033
Alignment:
Q  291 tagcaattgaagtgttgggctcatttttgtatggtcgagatgtctctgaatggagaagtgcattggccagattaagaga 369  Q
    |||||||| |||| |||||||||||||||| ||||||  ||||  | |||||||  ||||||||| | |||||||||||    
T  33287111 tagcaattaaagtattgggctcatttttgtttggtcgtaatgtgacggaatggaagagtgcattgactagattaagaga 33287033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 369
Target Start/End: Complemental strand, 33411526 - 33411444
Alignment:
Q  287 ccactagcaattgaagtgttgggctcatttttgtatggtcgagatgtctctgaatggagaagtgcattggccagattaagaga 369  Q
    |||||||||||| |||| |||||||||||||||| |||||    |||  |||||||||  ||||||||||| ||||| |||||    
T  33411526 ccactagcaattaaagtattgggctcatttttgtttggtcatagtgtggctgaatggaagagtgcattggctagattgagaga 33411444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 363
Target Start/End: Complemental strand, 9168340 - 9168268
Alignment:
Q  291 tagcaattgaagtgttgggctcatttttgtatggtcgagatgtctctgaatggagaagtgcattggccagatt 363  Q
    |||||||| |||| |||||||||||||||| ||||||  ||||  ||||||| |  ||||||||||| |||||    
T  9168340 tagcaattaaagtattgggctcatttttgtttggtcgtaatgtgactgaatgcaagagtgcattggctagatt 9168268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 84 - 152
Target Start/End: Original strand, 31561110 - 31561178
Alignment:
Q  84 taggttcagggagtagaattatcgtaatttctagagatggccatatcttgagagagcatggagtagatg 152  Q
    ||||| ||||||||||||||||  | |||||||||||||  ||||| |||| |||| ||||||| ||||    
T  31561110 taggtgcagggagtagaattattatcatttctagagatgagcatatattgaaagagtatggagtggatg 31561178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 287 - 355
Target Start/End: Complemental strand, 33059136 - 33059068
Alignment:
Q  287 ccactagcaattgaagtgttgggctcatttttgtatggtcgagatgtctctgaatggagaagtgcattg 355  Q
    |||||||||||| |||| |||||||| ||||||| ||||||  ||||  |||||||||  |||||||||    
T  33059136 ccactagcaattaaagtattgggctcgtttttgtttggtcgtaatgtgactgaatggaagagtgcattg 33059068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 369
Target Start/End: Complemental strand, 33306041 - 33305977
Alignment:
Q  305 ttgggctcatttttgtatggtcgagatgtctctgaatggagaagtgcattggccagattaagaga 369  Q
    |||||||||||||||| ||||||  ||||  |||||||||  ||||||||||| ||||| |||||    
T  33306041 ttgggctcatttttgtttggtcgtaatgtgactgaatggaagagtgcattggctagattgagaga 33305977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 434
Target Start/End: Original strand, 31245300 - 31245733
Alignment:
Q  1 atgtcgaagaaaatcccttgtagttcttgataatgttgataaagttgaacaactggataaactggacataacacgagaatgtctaggttcagggagtaga 100  Q
    ||||| || |||||||||| |||||||||||||||||||| |||||||||||||||||||| |||  || ||||||||||| |||||  |||||||||||    
T  31245300 atgtcaaataaaatcccttatagttcttgataatgttgatcaagttgaacaactggataaattggctatgacacgagaatggctaggcacagggagtaga 31245399  T
Q  101 attatcgtaatttctagagatggccatatcttgagagagcatggagtagatgaaatttatgaagtacgagcattagatcttaatgatgcccttcgattgt 200  Q
    || ||| |||||||||||||||  |||||||||||||||||||||||||||||| | ||  |||| |||   || |||| |||| ||||||||| |||||    
T  31245400 atcatcataatttctagagatgttcatatcttgagagagcatggagtagatgaagtgtacaaagttcgactcttggatcataataatgcccttcaattgt 31245499  T
Q  201 tttgtaggaaagctttcaaaagtgatgatatcttgagtggttatgcagacttgacatatgatgtactaaaatatgctgatggcattccactagcaattga 300  Q
    |||||||||| |||||||| |||||||||||| |||| |||||   | |||||||| |||||| ||||| ||||||  ||||| ||||| |||||||| |    
T  31245500 tttgtaggaaggctttcaagagtgatgatatcatgagcggttacatatacttgacagatgatgcactaacatatgccaatggccttccattagcaattaa 31245599  T
Q  301 agtgttgggctcatttttgtatggtcgagatgtctctgaatggagaagtgcattggccagattaagagagaatcccatggcagaaattatggatgtacta 400  Q
    ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||| || || | | |||| ||||||||||||||     
T  31245600 agttttgggctcatttttgtatggccgagatgtctctgaatggagaagtgcattggcaaggttaagagaaaacccaaggacagatattatggatgtactt 31245699  T
Q  401 cggcttagttatgatggactaaaggatatagaaa 434  Q
    ||  |||||| |||||||||| |||||| |||||    
T  31245700 cgaattagttttgatggactagaggatacagaaa 31245733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 210 - 375
Target Start/End: Complemental strand, 31528053 - 31527888
Alignment:
Q  210 aagctttcaaaagtgatgatatcttgagtggttatgcagacttgacatatgatgtactaaaatatgctgatggcattccactagcaattgaagtgttggg 309  Q
    ||||||||||| ||||| |||| ||||||  |||||  || |||  ||||||  ||||||| |||||| ||||| | |||||||| ||| |||  |||||    
T  31528053 aagctttcaaacgtgataatattttgagtaattatgacgagttggtatatgagatactaaattatgctaatggcttaccactagcgattaaagcattggg 31527954  T
Q  310 ctcatttttgtatggtcgagatgtctctgaatggagaagtgcattggccagattaagagagaatcc 375  Q
    ||||||||||| |||||||||| | | ||||||||||||||||||| | ||||| ||||| |||||    
T  31527953 ctcatttttgtttggtcgagatatttatgaatggagaagtgcattgactagattgagagacaatcc 31527888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 287 - 363
Target Start/End: Complemental strand, 31019367 - 31019291
Alignment:
Q  287 ccactagcaattgaagtgttgggctcatttttgtatggtcgagatgtctctgaatggagaagtgcattggccagatt 363  Q
    |||||||||||| |||| |||||||||||||||| |||||||||| |||| |||||||||||||||||||| |||||    
T  31019367 ccactagcaattaaagtattgggctcatttttgtttggtcgagatatctccgaatggagaagtgcattggctagatt 31019291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 287 - 369
Target Start/End: Complemental strand, 31029248 - 31029166
Alignment:
Q  287 ccactagcaattgaagtgttgggctcatttttgtatggtcgagatgtctctgaatggagaagtgcattggccagattaagaga 369  Q
    |||||||| ||| |||| |||||||||||||||| |||||||||| |||||||||||||||||  |||||| ||||| |||||    
T  31029248 ccactagctattaaagtattgggctcatttttgtttggtcgagatatctctgaatggagaagtaaattggctagattgagaga 31029166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 267 - 375
Target Start/End: Complemental strand, 31033603 - 31033496
Alignment:
Q  267 taaaatatgctgatggcattccactagcaattgaagtgttgggctcatttttgtatggtcgagatgtctctgaatggagaagtgcattggccagattaag 366  Q
    |||| |||| ||||||| | ||||  |||||| |||| ||||||||||||| || ||||||| || |||||||||||| |||||||||||| ||||| ||    
T  31033603 taaattatgttgatggcctaccaccggcaattaaagtattgggctcatttt-gtgtggtcgaaatatctctgaatggacaagtgcattggctagattgag 31033505  T
Q  367 agagaatcc 375  Q
    ||| |||||    
T  31033504 agaaaatcc 31033496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 287 - 357
Target Start/End: Original strand, 31477478 - 31477548
Alignment:
Q  287 ccactagcaattgaagtgttgggctcatttttgtatggtcgagatgtctctgaatggagaagtgcattggc 357  Q
    ||||| |||||| |||| ||||| |||||||||| |||||| ||| | |||||||||||||||||||||||    
T  31477478 ccacttgcaattaaagtattgggttcatttttgtttggtcgggatatatctgaatggagaagtgcattggc 31477548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 290 - 363
Target Start/End: Complemental strand, 31158813 - 31158740
Alignment:
Q  290 ctagcaattgaagtgttgggctcatttttgtatggtcgagatgtctctgaatggagaagtgcattggccagatt 363  Q
    ||||||||| |||| ||||| |||||||||| |||||||||  ||| |||||||| |||||||||||| |||||    
T  31158813 ctagcaattaaagtattgggatcatttttgtttggtcgagacatctatgaatggaaaagtgcattggctagatt 31158740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 27 - 152
Target Start/End: Complemental strand, 31159076 - 31158951
Alignment:
Q  27 ttgataatgttgataaagttgaacaactggataaactggacataacacgagaatgtctaggttcagggagtagaattatcgtaatttctagagatggcca 126  Q
    |||||||||||||||||||||||||||| |||||| | |   | |  || |||||  ||||| |||||||||||||  |  |||||||||||||||  ||    
T  31159076 ttgataatgttgataaagttgaacaacttgataaattagctgtgaatcgtgaatgcttaggtgcagggagtagaatcgttataatttctagagatgaaca 31158977  T
Q  127 tatcttgagagagcatggagtagatg 152  Q
    |||||||| |||| ||||||| ||||    
T  31158976 tatcttgaaagagtatggagttgatg 31158951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 27 - 152
Target Start/End: Original strand, 31489919 - 31490044
Alignment:
Q  27 ttgataatgttgataaagttgaacaactggataaactggacataacacgagaatgtctaggttcagggagtagaattatcgtaatttctagagatggcca 126  Q
    ||||||||||||||||||||| |||||| |||||| |||   | |  || |||||  ||||| ||||||||||||| ||  |||||||| ||||||  ||    
T  31489919 ttgataatgttgataaagttggacaacttgataaattgggtgtgaatcgtgaatggttaggtgcagggagtagaatcattataatttctggagatgaaca 31490018  T
Q  127 tatcttgagagagcatggagtagatg 152  Q
    |||||||| |||| ||||||| ||||    
T  31490019 tatcttgaaagagtatggagttgatg 31490044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 24 - 159
Target Start/End: Complemental strand, 31019630 - 31019495
Alignment:
Q  24 ttcttgataatgttgataaagttgaacaactggataaactggacataacacgagaatgtctaggttcagggagtagaattatcgtaatttctagagatgg 123  Q
    |||| ||||||||||||||||||||||| || |||||  | |   |||  || |||||| |||||  |||||||||||| ||  |||||||||||||||     
T  31019630 ttctcgataatgttgataaagttgaacagctcgataagttagctttaaatcgtgaatgtttaggtgtagggagtagaatcattataatttctagagatga 31019531  T
Q  124 ccatatcttgagagagcatggagtagatgaaattta 159  Q
     ||||||||||  ||| ||||||| |||||| ||||    
T  31019530 gcatatcttgaatgagtatggagttgatgaagttta 31019495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 24 - 159
Target Start/End: Complemental strand, 31029511 - 31029376
Alignment:
Q  24 ttcttgataatgttgataaagttgaacaactggataaactggacataacacgagaatgtctaggttcagggagtagaattatcgtaatttctagagatgg 123  Q
    |||| ||||||||||||||||||||||| || |||||  | |   |||  || |||| | ||||| ||||||||||||| ||  |||||||||||||||     
T  31029511 ttctcgataatgttgataaagttgaacagctcgataagttagctttaaatcgtgaatatttaggtgcagggagtagaatcattataatttctagagatga 31029412  T
Q  124 ccatatcttgagagagcatggagtagatgaaattta 159  Q
     ||||||||||  ||| ||||||| |||||| ||||    
T  31029411 gcatatcttgaatgagtatggagttgatgaagttta 31029376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 272 - 369
Target Start/End: Complemental strand, 31149930 - 31149833
Alignment:
Q  272 tatgctgatggcattccactagcaattgaagtgttgggctcatttttgtatggtcgagatgtctctgaatggagaagtgcattggccagattaagaga 369  Q
    |||||| ||||| | || ||||||||| |||| || ||||| |||||||||| |||| || | | |||||||| |||||||||||| ||||| |||||    
T  31149930 tatgctaatggcctacctctagcaattaaagtattaggctcgtttttgtatgatcgaaatatttttgaatggaaaagtgcattggcaagattgagaga 31149833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 291 - 358
Target Start/End: Original strand, 31502606 - 31502671
Alignment:
Q  291 tagcaattgaagtgttgggctcatttttgtatggtcgagatgtctctgaatggagaagtgcattggcc 358  Q
    ||||||||||||| | |||||||||||||  |||||||||  ||| |||||||| |||||||||||||    
T  31502606 tagcaattgaagtatagggctcatttttg--tggtcgagacatctttgaatggaaaagtgcattggcc 31502671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 57
Target Start/End: Original strand, 31477218 - 31477248
Alignment:
Q  27 ttgataatgttgataaagttgaacaactgga 57  Q
    |||||||||||||||||||||||||||||||    
T  31477218 ttgataatgttgataaagttgaacaactgga 31477248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 57
Target Start/End: Original strand, 31502340 - 31502370
Alignment:
Q  27 ttgataatgttgataaagttgaacaactgga 57  Q
    |||||||||||||||||||||||||||||||    
T  31502340 ttgataatgttgataaagttgaacaactgga 31502370  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 31033820 - 31033784
Alignment:
Q  15 cccttgtagttcttgataatgttgataaagttgaaca 51  Q
    ||||| |||||||||||||||||||| ||||||||||    
T  31033820 cccttctagttcttgataatgttgatcaagttgaaca 31033784  T

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Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 434
Target Start/End: Original strand, 14724579 - 14724991
Alignment:
Q  1 atgtcgaagaaaatcccttgtagttcttgataatgttgataaagttgaacaactggataaactggacataacacgagaatgtctaggttcagggagtaga 100  Q
    ||||| || |||||| |||| |||||||||||||||| |   |||||||||||| || ||| ||| ||| | | || |||| |||||  |||| ||||||    
T  14724579 atgtcaaataaaatctcttgaagttcttgataatgttca---agttgaacaacttgaaaaattggccatgaaatgataatggctaggcacaggaagtaga 14724675  T
Q  101 attatcgtaatttctagagatggccatatcttgagagagcatggagtagatgaaatttatgaagtacgagcattagatcttaatgatgcccttcgattgt 200  Q
    || |||||||| ||||||||| |||||||||| ||||||||||||||||||||| ||||  |||| |||    || ||| |||||||||||||| |||||    
T  14724676 atcatcgtaatatctagagatagccatatcttcagagagcatggagtagatgaagtttacaaagttcgactcataaatcataatgatgcccttcaattgt 14724775  T
Q  201 tttgtaggaaagctttcaaaagtgatgatatcttgagtggttatgcagacttgacatatgatgtactaaaatatgctgatggcattcc--actagcaatt 298  Q
    |||||||||||||||| |||| ||| ||| || |||| |||||   | ||| |||| ||||||||||  |||||||  | ||  || |  | ||||||||    
T  14724776 tttgtaggaaagctttaaaaattgacgatgtcatgagcggttacataaactcgacagatgatgtactcgaatatgccaaaggtcttgcatattagcaatt 14724875  T
Q  299 gaagtgttgggctcatttttgtatggtcgagatgtctctgaatggagaagtgcattggccagattaagagagaatcccatggcagaaattatggatgtac 398  Q
     |||||||||| |||||||||||                    ||||||||| |||||| ||||||||||||||||| | |||||| |||||||||||||    
T  14724876 aaagtgttgggatcatttttgta--------------------ggagaagtgtattggcaagattaagagagaatccaagggcagatattatggatgtac 14724955  T
Q  399 tacggcttagttatgatggactaaaggatatagaaa 434  Q
    | ||  |||||| ||| ||||||||||||| |||||    
T  14724956 ttcgaattagttttgaaggactaaaggatacagaaa 14724991  T

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Target: chr5 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 23 - 276
Target Start/End: Complemental strand, 17599168 - 17598911
Alignment:
Q  23 gttcttgataatgttgataaagttgaacaactggataaactggacataacacgagaatgtct----aggttcagggagtagaattatcgtaatttctaga 118  Q
    ||||||||||||||| || |||||||||||||||| ||| ||| ||| | | ||||||| ||    |||  || | |||||||| |||||||| ||||||    
T  17599168 gttcttgataatgttcatcaagttgaacaactggaaaaattggccatgaaatgagaatggctggctaggcacaagaagtagaatcatcgtaatatctaga 17599069  T
Q  119 gatggccatatcttgagagagcatggagtagatgaaatttatgaagtacgagcattagatcttaatgatgcccttcgattgttttgtaggaaagctttca 218  Q
    ||| |||||||||| ||||||||||||||||||||| ||||  |||| |||    || ||| |||||||||||||| ||||||||||||||||||||| |    
T  17599068 gatagccatatcttcagagagcatggagtagatgaagtttacaaagttcgactcataaatcataatgatgcccttcaattgttttgtaggaaagctttaa 17598969  T
Q  219 aaagtgatgatatcttgagtggttatgcagacttgacatatgatgtactaaaatatgc 276  Q
    ||| ||| ||| || |||| |||||   | ||| |||| ||||||||||  |||||||    
T  17598968 aaattgacgatgtcatgagcggttacataaactcgacagatgatgtactcgaatatgc 17598911  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 342 - 434
Target Start/End: Complemental strand, 17598863 - 17598771
Alignment:
Q  342 ggagaagtgcattggccagattaagagagaatcccatggcagaaattatggatgtactacggcttagttatgatggactaaaggatatagaaa 434  Q
    ||||||||| |||||| ||||||||||||||||| | |||||| ||||||||||||||     |||||| ||| ||||||||||||| |||||    
T  17598863 ggagaagtgtattggcaagattaagagagaatccaagggcagatattatggatgtacttttaattagttttgaaggactaaaggatacagaaa 17598771  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 287 - 371
Target Start/End: Original strand, 17439335 - 17439419
Alignment:
Q  287 ccactagcaattgaagtgttgggctcatttttgtatggtcgagatgtctctgaatggagaagtgcattggccagattaagagaga 371  Q
    |||||||||||| ||||  ||||||||||||||| |||| |  ||||  |||||||||  ||||||||||| ||||| |||||||    
T  17439335 ccactagcaattaaagtaatgggctcatttttgtttggttgtaatgtgactgaatggaagagtgcattggctagattgagagaga 17439419  T

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Target: scaffold0428 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 357
Target Start/End: Complemental strand, 8333 - 8263
Alignment:
Q  287 ccactagcaattgaagtgttgggctcatttttgtatggtcgagatgtctctgaatggagaagtgcattggc 357  Q
    ||||||||||||  ||| |||||||||||||||| ||||||  ||||  |||||||||  |||||||||||    
T  8333 ccactagcaattacagtattgggctcatttttgtctggtcgtaatgtgactgaatggaagagtgcattggc 8263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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