View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21255_low_14 (Length: 385)

Name: NF21255_low_14
Description: NF21255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21255_low_14
NF21255_low_14
[»] chr2 (24 HSPs)
chr2 (13-167)||(5282088-5282241)
chr2 (176-263)||(5282450-5282537)
chr2 (351-385)||(346345-346379)
chr2 (351-385)||(2521712-2521746)
chr2 (351-385)||(4559596-4559630)
chr2 (351-385)||(6171828-6171862)
chr2 (351-385)||(9733846-9733880)
chr2 (351-385)||(17966020-17966054)
chr2 (351-385)||(21737400-21737434)
chr2 (351-385)||(34356700-34356734)
chr2 (351-385)||(39995131-39995165)
chr2 (351-385)||(42674661-42674695)
chr2 (351-384)||(40950859-40950892)
chr2 (352-385)||(41750566-41750599)
chr2 (353-385)||(2050903-2050935)
chr2 (351-383)||(11071644-11071676)
chr2 (353-385)||(37192559-37192591)
chr2 (351-383)||(37533991-37534023)
chr2 (351-385)||(5770110-5770144)
chr2 (351-385)||(14777498-14777532)
chr2 (351-385)||(27357963-27357997)
chr2 (351-385)||(40570057-40570091)
chr2 (351-385)||(45409287-45409321)
chr2 (355-383)||(638632-638660)
[»] chr6 (8 HSPs)
chr6 (349-385)||(1317055-1317091)
chr6 (349-385)||(10246220-10246256)
chr6 (351-385)||(2657737-2657771)
chr6 (351-385)||(7053570-7053604)
chr6 (351-385)||(8029370-8029404)
chr6 (354-385)||(18897958-18897989)
chr6 (351-385)||(14171050-14171084)
chr6 (351-384)||(6705765-6705798)
[»] chr4 (29 HSPs)
chr4 (349-385)||(27762897-27762933)
chr4 (349-385)||(34049595-34049631)
chr4 (351-385)||(936167-936201)
chr4 (351-385)||(6279921-6279955)
chr4 (351-385)||(18405234-18405268)
chr4 (351-385)||(23686828-23686862)
chr4 (351-385)||(25932482-25932516)
chr4 (351-385)||(39498866-39498900)
chr4 (351-385)||(39502205-39502239)
chr4 (351-385)||(39835307-39835341)
chr4 (351-385)||(40435941-40435975)
chr4 (351-385)||(43723305-43723339)
chr4 (351-385)||(45747796-45747830)
chr4 (351-385)||(48879366-48879400)
chr4 (351-385)||(55968000-55968034)
chr4 (351-384)||(27555452-27555485)
chr4 (351-384)||(35999728-35999761)
chr4 (352-385)||(47670403-47670436)
chr4 (351-383)||(41859047-41859079)
chr4 (351-383)||(42773991-42774023)
chr4 (350-385)||(32953564-32953599)
chr4 (350-385)||(48518890-48518925)
chr4 (353-383)||(18931796-18931826)
chr4 (351-385)||(25916035-25916069)
chr4 (355-385)||(27942784-27942814)
chr4 (351-385)||(30415943-30415977)
chr4 (355-385)||(34237424-34237454)
chr4 (351-385)||(39730293-39730327)
chr4 (351-383)||(45596311-45596343)
[»] chr3 (18 HSPs)
chr3 (349-385)||(47114855-47114891)
chr3 (351-385)||(6231501-6231535)
chr3 (351-385)||(8476308-8476342)
chr3 (351-385)||(9320448-9320482)
chr3 (351-385)||(11239120-11239154)
chr3 (351-385)||(20297830-20297864)
chr3 (351-385)||(24574612-24574646)
chr3 (351-385)||(26849059-26849093)
chr3 (351-385)||(40908302-40908336)
chr3 (351-385)||(43715308-43715342)
chr3 (351-385)||(44952345-44952379)
chr3 (351-384)||(28124436-28124469)
chr3 (351-383)||(20414465-20414497)
chr3 (351-385)||(31435923-31435957)
chr3 (351-384)||(43132157-43132190)
chr3 (354-383)||(48339760-48339789)
chr3 (353-385)||(1099235-1099267)
chr3 (355-383)||(33217917-33217945)
[»] chr1 (29 HSPs)
chr1 (349-385)||(20260084-20260120)
chr1 (351-385)||(2430534-2430568)
chr1 (351-385)||(2632890-2632924)
chr1 (351-385)||(3572565-3572599)
chr1 (351-385)||(5806291-5806325)
chr1 (351-385)||(6978808-6978842)
chr1 (351-385)||(9115875-9115909)
chr1 (351-385)||(32202331-32202365)
chr1 (351-385)||(39329646-39329680)
chr1 (351-385)||(39930495-39930529)
chr1 (351-385)||(46666746-46666780)
chr1 (351-385)||(47037495-47037529)
chr1 (351-385)||(52630811-52630845)
chr1 (351-384)||(6911532-6911565)
chr1 (352-385)||(25789801-25789834)
chr1 (351-384)||(49822917-49822950)
chr1 (351-383)||(1597342-1597374)
chr1 (351-383)||(8332054-8332086)
chr1 (353-385)||(9831872-9831904)
chr1 (351-383)||(12190177-12190209)
chr1 (350-385)||(14788761-14788796)
chr1 (354-385)||(36361820-36361851)
chr1 (354-385)||(51445083-51445114)
chr1 (351-385)||(1007785-1007819)
chr1 (351-385)||(5518504-5518538)
chr1 (351-385)||(29091704-29091738)
chr1 (353-383)||(32824962-32824992)
chr1 (351-385)||(35187494-35187528)
chr1 (355-385)||(38964683-38964713)
[»] chr8 (20 HSPs)
chr8 (350-385)||(10896216-10896251)
chr8 (351-385)||(1554354-1554388)
chr8 (351-385)||(12710682-12710716)
chr8 (351-385)||(18726619-18726653)
chr8 (351-385)||(25837948-25837982)
chr8 (351-385)||(32660933-32660967)
chr8 (351-385)||(35818424-35818458)
chr8 (351-385)||(38364118-38364152)
chr8 (351-384)||(26062182-26062215)
chr8 (351-384)||(38132737-38132770)
chr8 (352-385)||(42755904-42755937)
chr8 (353-385)||(8635671-8635703)
chr8 (351-383)||(16313507-16313539)
chr8 (355-385)||(7931276-7931306)
chr8 (351-385)||(37392546-37392580)
chr8 (351-385)||(40197076-40197110)
chr8 (351-385)||(41228714-41228748)
chr8 (352-385)||(33444627-33444660)
chr8 (357-385)||(3050046-3050074)
chr8 (351-383)||(7317412-7317444)
[»] chr7 (29 HSPs)
chr7 (350-385)||(38544231-38544266)
chr7 (349-384)||(40212927-40212962)
chr7 (351-385)||(8419589-8419623)
chr7 (351-385)||(9814218-9814252)
chr7 (351-385)||(11330030-11330064)
chr7 (351-385)||(27213855-27213889)
chr7 (351-385)||(27248330-27248364)
chr7 (351-385)||(33378879-33378913)
chr7 (351-385)||(39554220-39554254)
chr7 (349-383)||(44566084-44566118)
chr7 (351-385)||(48160591-48160625)
chr7 (351-385)||(48314159-48314193)
chr7 (352-385)||(41632365-41632398)
chr7 (352-385)||(43949282-43949315)
chr7 (351-383)||(35488189-35488221)
chr7 (352-384)||(45265049-45265081)
chr7 (349-384)||(45440946-45440981)
chr7 (354-385)||(48341399-48341430)
chr7 (351-385)||(16825354-16825388)
chr7 (351-385)||(25924637-25924671)
chr7 (351-385)||(27419224-27419258)
chr7 (351-385)||(28904186-28904220)
chr7 (351-385)||(41684022-41684056)
chr7 (353-383)||(44820293-44820323)
chr7 (351-385)||(45045663-45045697)
chr7 (351-384)||(25045618-25045651)
chr7 (352-385)||(45723244-45723277)
chr7 (351-383)||(25098108-25098140)
chr7 (352-384)||(30685993-30686025)
[»] scaffold0006 (1 HSPs)
scaffold0006 (351-385)||(201962-201996)
[»] chr5 (14 HSPs)
chr5 (351-385)||(555706-555740)
chr5 (351-385)||(4765560-4765594)
chr5 (351-385)||(12970530-12970564)
chr5 (351-385)||(19065505-19065539)
chr5 (351-385)||(22935912-22935946)
chr5 (351-385)||(28602592-28602626)
chr5 (351-385)||(29543015-29543049)
chr5 (350-383)||(36703913-36703946)
chr5 (351-383)||(14206821-14206853)
chr5 (354-385)||(11855658-11855689)
chr5 (355-385)||(6091752-6091782)
chr5 (351-385)||(18412246-18412280)
chr5 (351-383)||(27481396-27481428)
chr5 (353-385)||(32535974-32536006)


Alignment Details
Target: chr2 (Bit Score: 131; Significance: 7e-68; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 13 - 167
Target Start/End: Original strand, 5282088 - 5282241
Alignment:
Q  13 caataacaataataaatgattaaaatacaaacaattaactaaaaatcatttttaatgacaagacttaaattacatttaaaattaaccagtctatttgctt 112  Q
    ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  5282088 caataacaataataattgattaaaatacaaacaattaattaaaaatcatttttaatgacaagacttaaattacatttaaaattaaccattctatttgctt 5282187  T
Q  113 caattatgcctccgttcaaatttttgtttcaaattttatttttctttgtcacaat 167  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  5282188 caattatgcct-cgttcaaatttttgtttcaaattttatttttctttgtcgcaat 5282241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 176 - 263
Target Start/End: Original strand, 5282450 - 5282537
Alignment:
Q  176 ttactaattaaaaactatttttaatgacaagaattaaattaaatttacaacattgcaatttgaaggatttttattgccggcccttcat 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  5282450 ttactaattaaaaactatttttaatgacaagaattaaattaaatttacaacattgcaaattgaaggatttttattgccggcccttcat 5282537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 385
Target Start/End: Original strand, 346345 - 346379
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||    
T  346345 gggtgtgtttgtttcaagttataattgttgattcc 346379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 385
Target Start/End: Complemental strand, 2521746 - 2521712
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||    
T  2521746 gggtgtgtttgtttcaagttataattgttgattcc 2521712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 385
Target Start/End: Complemental strand, 4559630 - 4559596
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||    
T  4559630 gggtgtgtttgtttcaagttataattgttgattcc 4559596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 385
Target Start/End: Complemental strand, 6171862 - 6171828
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||    
T  6171862 gggtgtgtttgtttcaagttataattgttgattcc 6171828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 385
Target Start/End: Original strand, 9733846 - 9733880
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||    
T  9733846 gggtgtgtttgtttcaagttataattgttgattcc 9733880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 385
Target Start/End: Complemental strand, 17966054 - 17966020
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||    
T  17966054 gggtgtgtttgtttcaagttataattgttgattcc 17966020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 385
Target Start/End: Original strand, 21737400 - 21737434
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||    
T  21737400 gggtgtgtttgtttcaagttataattgttgattcc 21737434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 385
Target Start/End: Original strand, 34356700 - 34356734
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||    
T  34356700 gggtgtgtttgtttcaagttataattgttgattcc 34356734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 385
Target Start/End: Original strand, 39995131 - 39995165
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||    
T  39995131 gggtgtgtttgtttcaagttataattgttgattcc 39995165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 385
Target Start/End: Original strand, 42674661 - 42674695
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||    
T  42674661 gggtgtgtttgtttcaagttataattgttgattcc 42674695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 351 - 384
Target Start/End: Original strand, 40950859 - 40950892
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattc 384  Q
    ||||||||||||||||||||||||||||||||||    
T  40950859 gggtgtgtttgtttcaagttataattgttgattc 40950892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 352 - 385
Target Start/End: Complemental strand, 41750599 - 41750566
Alignment:
Q  352 ggtgtgtttgtttcaagttataattgttgattcc 385  Q
    ||||||||||||||||||||||||||||||||||    
T  41750599 ggtgtgtttgtttcaagttataattgttgattcc 41750566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 353 - 385
Target Start/End: Complemental strand, 2050935 - 2050903
Alignment:
Q  353 gtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||    
T  2050935 gtgtgtttgtttcaagttataattgttgattcc 2050903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 351 - 383
Target Start/End: Complemental strand, 11071676 - 11071644
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgatt 383  Q
    |||||||||||||||||||||||||||||||||    
T  11071676 gggtgtgtttgtttcaagttataattgttgatt 11071644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 353 - 385
Target Start/End: Complemental strand, 37192591 - 37192559
Alignment:
Q  353 gtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||    
T  37192591 gtgtgtttgtttcaagttataattgttgattcc 37192559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 351 - 383
Target Start/End: Complemental strand, 37534023 - 37533991
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgatt 383  Q
    |||||||||||||||||||||||||||||||||    
T  37534023 gggtgtgtttgtttcaagttataattgttgatt 37533991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 351 - 385
Target Start/End: Original strand, 5770110 - 5770144
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||| ||||||||||||||||||||||||||||||    
T  5770110 gggtatgtttgtttcaagttataattgttgattcc 5770144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 351 - 385
Target Start/End: Original strand, 14777498 - 14777532
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    ||||||||||||||||| |||||||||||||||||    
T  14777498 gggtgtgtttgtttcaatttataattgttgattcc 14777532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 351 - 385
Target Start/End: Original strand, 27357963 - 27357997
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    ||||||||||||||||||||||| |||||||||||    
T  27357963 gggtgtgtttgtttcaagttatatttgttgattcc 27357997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 351 - 385
Target Start/End: Complemental strand, 40570091 - 40570057
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||| ||||||    
T  40570091 gggtgtgtttgtttcaagttataattgtagattcc 40570057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 351 - 385
Target Start/End: Complemental strand, 45409321 - 45409287
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    ||||||||||||||||||||||| |||||||||||    
T  45409321 gggtgtgtttgtttcaagttatatttgttgattcc 45409287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 355 - 383
Target Start/End: Complemental strand, 638660 - 638632
Alignment:
Q  355 gtgtttgtttcaagttataattgttgatt 383  Q
    |||||||||||||||||||||||||||||    
T  638660 gtgtttgtttcaagttataattgttgatt 638632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 349 - 385
Target Start/End: Complemental strand, 1317091 - 1317055
Alignment:
Q  349 atgggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||||    
T  1317091 atgggtgtgtttgtttcaagttataattgttgattcc 1317055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 349 - 385
Target Start/End: Original strand, 10246220 - 10246256
Alignment:
Q  349 atgggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||||    
T  10246220 atgggtgtgtttgtttcaagttataattgttgattcc 10246256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 385
Target Start/End: Complemental strand, 2657771 - 2657737
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||    
T  2657771 gggtgtgtttgtttcaagttataattgttgattcc 2657737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 385
Target Start/End: Original strand, 7053570 - 7053604
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||    
T  7053570 gggtgtgtttgtttcaagttataattgttgattcc 7053604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 385
Target Start/End: Complemental strand, 8029404 - 8029370
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||    
T  8029404 gggtgtgtttgtttcaagttataattgttgattcc 8029370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 354 - 385
Target Start/End: Complemental strand, 18897989 - 18897958
Alignment:
Q  354 tgtgtttgtttcaagttataattgttgattcc 385  Q
    ||||||||||||||||||||||||||||||||    
T  18897989 tgtgtttgtttcaagttataattgttgattcc 18897958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 351 - 385
Target Start/End: Complemental strand, 14171084 - 14171050
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||| ||||||||    
T  14171084 gggtgtgtttgtttcaagttataatttttgattcc 14171050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 384
Target Start/End: Original strand, 6705765 - 6705798
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattc 384  Q
    ||||||||||||||||||||||| ||||||||||    
T  6705765 gggtgtgtttgtttcaagttatatttgttgattc 6705798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 349 - 385
Target Start/End: Original strand, 27762897 - 27762933
Alignment:
Q  349 atgggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||||    
T  27762897 atgggtgtgtttgtttcaagttataattgttgattcc 27762933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 349 - 385
Target Start/End: Original strand, 34049595 - 34049631
Alignment:
Q  349 atgggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||||    
T  34049595 atgggtgtgtttgtttcaagttataattgttgattcc 34049631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 385
Target Start/End: Complemental strand, 936201 - 936167
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||    
T  936201 gggtgtgtttgtttcaagttataattgttgattcc 936167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 385
Target Start/End: Original strand, 6279921 - 6279955
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||    
T  6279921 gggtgtgtttgtttcaagttataattgttgattcc 6279955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 385
Target Start/End: Original strand, 18405234 - 18405268
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||    
T  18405234 gggtgtgtttgtttcaagttataattgttgattcc 18405268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 385
Target Start/End: Complemental strand, 23686862 - 23686828
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||    
T  23686862 gggtgtgtttgtttcaagttataattgttgattcc 23686828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 385
Target Start/End: Complemental strand, 25932516 - 25932482
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||    
T  25932516 gggtgtgtttgtttcaagttataattgttgattcc 25932482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 385
Target Start/End: Complemental strand, 39498900 - 39498866
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||    
T  39498900 gggtgtgtttgtttcaagttataattgttgattcc 39498866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 385
Target Start/End: Complemental strand, 39502239 - 39502205
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||    
T  39502239 gggtgtgtttgtttcaagttataattgttgattcc 39502205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 385
Target Start/End: Original strand, 39835307 - 39835341
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||    
T  39835307 gggtgtgtttgtttcaagttataattgttgattcc 39835341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 385
Target Start/End: Complemental strand, 40435975 - 40435941
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||    
T  40435975 gggtgtgtttgtttcaagttataattgttgattcc 40435941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 385
Target Start/End: Complemental strand, 43723339 - 43723305
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||    
T  43723339 gggtgtgtttgtttcaagttataattgttgattcc 43723305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 385
Target Start/End: Original strand, 45747796 - 45747830
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||    
T  45747796 gggtgtgtttgtttcaagttataattgttgattcc 45747830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 385
Target Start/End: Complemental strand, 48879400 - 48879366
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||    
T  48879400 gggtgtgtttgtttcaagttataattgttgattcc 48879366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 385
Target Start/End: Original strand, 55968000 - 55968034
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||    
T  55968000 gggtgtgtttgtttcaagttataattgttgattcc 55968034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 351 - 384
Target Start/End: Complemental strand, 27555485 - 27555452
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattc 384  Q
    ||||||||||||||||||||||||||||||||||    
T  27555485 gggtgtgtttgtttcaagttataattgttgattc 27555452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 351 - 384
Target Start/End: Complemental strand, 35999761 - 35999728
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattc 384  Q
    ||||||||||||||||||||||||||||||||||    
T  35999761 gggtgtgtttgtttcaagttataattgttgattc 35999728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 352 - 385
Target Start/End: Complemental strand, 47670436 - 47670403
Alignment:
Q  352 ggtgtgtttgtttcaagttataattgttgattcc 385  Q
    ||||||||||||||||||||||||||||||||||    
T  47670436 ggtgtgtttgtttcaagttataattgttgattcc 47670403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 351 - 383
Target Start/End: Original strand, 41859047 - 41859079
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgatt 383  Q
    |||||||||||||||||||||||||||||||||    
T  41859047 gggtgtgtttgtttcaagttataattgttgatt 41859079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 351 - 383
Target Start/End: Complemental strand, 42774023 - 42773991
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgatt 383  Q
    |||||||||||||||||||||||||||||||||    
T  42774023 gggtgtgtttgtttcaagttataattgttgatt 42773991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 350 - 385
Target Start/End: Complemental strand, 32953599 - 32953564
Alignment:
Q  350 tgggtgtgtttgtttcaagttataattgttgattcc 385  Q
    ||||||||||||| ||||||||||||||||||||||    
T  32953599 tgggtgtgtttgtctcaagttataattgttgattcc 32953564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 350 - 385
Target Start/End: Original strand, 48518890 - 48518925
Alignment:
Q  350 tgggtgtgtttgtttcaagttataattgttgattcc 385  Q
    ||||||||||||||||||||||||||| ||||||||    
T  48518890 tgggtgtgtttgtttcaagttataatttttgattcc 48518925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 353 - 383
Target Start/End: Complemental strand, 18931826 - 18931796
Alignment:
Q  353 gtgtgtttgtttcaagttataattgttgatt 383  Q
    |||||||||||||||||||||||||||||||    
T  18931826 gtgtgtttgtttcaagttataattgttgatt 18931796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 351 - 385
Target Start/End: Original strand, 25916035 - 25916069
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||| ||||||||    
T  25916035 gggtgtgtttgtttcaagttataatttttgattcc 25916069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 355 - 385
Target Start/End: Complemental strand, 27942814 - 27942784
Alignment:
Q  355 gtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||    
T  27942814 gtgtttgtttcaagttataattgttgattcc 27942784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 351 - 385
Target Start/End: Complemental strand, 30415977 - 30415943
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    ||||||||||||||||||||||| |||||||||||    
T  30415977 gggtgtgtttgtttcaagttatatttgttgattcc 30415943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 355 - 385
Target Start/End: Original strand, 34237424 - 34237454
Alignment:
Q  355 gtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||    
T  34237424 gtgtttgtttcaagttataattgttgattcc 34237454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 351 - 385
Target Start/End: Original strand, 39730293 - 39730327
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||| ||||||||    
T  39730293 gggtgtgtttgtttcaagttataatttttgattcc 39730327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 351 - 383
Target Start/End: Complemental strand, 45596343 - 45596311
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgatt 383  Q
    ||||| |||||||||||||||||||||||||||    
T  45596343 gggtgcgtttgtttcaagttataattgttgatt 45596311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 349 - 385
Target Start/End: Original strand, 47114855 - 47114891
Alignment:
Q  349 atgggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||||    
T  47114855 atgggtgtgtttgtttcaagttataattgttgattcc 47114891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 385
Target Start/End: Original strand, 6231501 - 6231535
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||    
T  6231501 gggtgtgtttgtttcaagttataattgttgattcc 6231535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 385
Target Start/End: Original strand, 8476308 - 8476342
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||    
T  8476308 gggtgtgtttgtttcaagttataattgttgattcc 8476342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 385
Target Start/End: Original strand, 9320448 - 9320482
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||    
T  9320448 gggtgtgtttgtttcaagttataattgttgattcc 9320482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 385
Target Start/End: Original strand, 11239120 - 11239154
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||    
T  11239120 gggtgtgtttgtttcaagttataattgttgattcc 11239154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 385
Target Start/End: Complemental strand, 20297864 - 20297830
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||    
T  20297864 gggtgtgtttgtttcaagttataattgttgattcc 20297830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 385
Target Start/End: Complemental strand, 24574646 - 24574612
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||    
T  24574646 gggtgtgtttgtttcaagttataattgttgattcc 24574612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 385
Target Start/End: Complemental strand, 26849093 - 26849059
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||    
T  26849093 gggtgtgtttgtttcaagttataattgttgattcc 26849059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 385
Target Start/End: Complemental strand, 40908336 - 40908302
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||    
T  40908336 gggtgtgtttgtttcaagttataattgttgattcc 40908302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 385
Target Start/End: Original strand, 43715308 - 43715342
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||    
T  43715308 gggtgtgtttgtttcaagttataattgttgattcc 43715342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 385
Target Start/End: Complemental strand, 44952379 - 44952345
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||    
T  44952379 gggtgtgtttgtttcaagttataattgttgattcc 44952345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 351 - 384
Target Start/End: Original strand, 28124436 - 28124469
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattc 384  Q
    ||||||||||||||||||||||||||||||||||    
T  28124436 gggtgtgtttgtttcaagttataattgttgattc 28124469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 351 - 383
Target Start/End: Original strand, 20414465 - 20414497
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgatt 383  Q
    |||||||||||||||||||||||||||||||||    
T  20414465 gggtgtgtttgtttcaagttataattgttgatt 20414497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 351 - 385
Target Start/End: Original strand, 31435923 - 31435957
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    ||||||||||||||||||||||| |||||||||||    
T  31435923 gggtgtgtttgtttcaagttatatttgttgattcc 31435957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 384
Target Start/End: Original strand, 43132157 - 43132190
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattc 384  Q
    ||||||||||||||||||||||| ||||||||||    
T  43132157 gggtgtgtttgtttcaagttatatttgttgattc 43132190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 354 - 383
Target Start/End: Original strand, 48339760 - 48339789
Alignment:
Q  354 tgtgtttgtttcaagttataattgttgatt 383  Q
    ||||||||||||||||||||||||||||||    
T  48339760 tgtgtttgtttcaagttataattgttgatt 48339789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 353 - 385
Target Start/End: Complemental strand, 1099267 - 1099235
Alignment:
Q  353 gtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||| ||||||||||||||||||||    
T  1099267 gtgtgtttgttttaagttataattgttgattcc 1099235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 355 - 383
Target Start/End: Original strand, 33217917 - 33217945
Alignment:
Q  355 gtgtttgtttcaagttataattgttgatt 383  Q
    |||||||||||||||||||||||||||||    
T  33217917 gtgtttgtttcaagttataattgttgatt 33217945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 349 - 385
Target Start/End: Original strand, 20260084 - 20260120
Alignment:
Q  349 atgggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||||    
T  20260084 atgggtgtgtttgtttcaagttataattgttgattcc 20260120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 385
Target Start/End: Complemental strand, 2430568 - 2430534
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||    
T  2430568 gggtgtgtttgtttcaagttataattgttgattcc 2430534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 385
Target Start/End: Complemental strand, 2632924 - 2632890
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||    
T  2632924 gggtgtgtttgtttcaagttataattgttgattcc 2632890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 385
Target Start/End: Original strand, 3572565 - 3572599
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||    
T  3572565 gggtgtgtttgtttcaagttataattgttgattcc 3572599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 385
Target Start/End: Original strand, 5806291 - 5806325
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||    
T  5806291 gggtgtgtttgtttcaagttataattgttgattcc 5806325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 385
Target Start/End: Complemental strand, 6978842 - 6978808
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||    
T  6978842 gggtgtgtttgtttcaagttataattgttgattcc 6978808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 385
Target Start/End: Complemental strand, 9115909 - 9115875
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||    
T  9115909 gggtgtgtttgtttcaagttataattgttgattcc 9115875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 385
Target Start/End: Original strand, 32202331 - 32202365
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||    
T  32202331 gggtgtgtttgtttcaagttataattgttgattcc 32202365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 385
Target Start/End: Complemental strand, 39329680 - 39329646
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||    
T  39329680 gggtgtgtttgtttcaagttataattgttgattcc 39329646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 385
Target Start/End: Complemental strand, 39930529 - 39930495
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||    
T  39930529 gggtgtgtttgtttcaagttataattgttgattcc 39930495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 385
Target Start/End: Complemental strand, 46666780 - 46666746
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||    
T  46666780 gggtgtgtttgtttcaagttataattgttgattcc 46666746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 385
Target Start/End: Complemental strand, 47037529 - 47037495
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||    
T  47037529 gggtgtgtttgtttcaagttataattgttgattcc 47037495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 385
Target Start/End: Complemental strand, 52630845 - 52630811
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||    
T  52630845 gggtgtgtttgtttcaagttataattgttgattcc 52630811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 351 - 384
Target Start/End: Complemental strand, 6911565 - 6911532
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattc 384  Q
    ||||||||||||||||||||||||||||||||||    
T  6911565 gggtgtgtttgtttcaagttataattgttgattc 6911532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 352 - 385
Target Start/End: Complemental strand, 25789834 - 25789801
Alignment:
Q  352 ggtgtgtttgtttcaagttataattgttgattcc 385  Q
    ||||||||||||||||||||||||||||||||||    
T  25789834 ggtgtgtttgtttcaagttataattgttgattcc 25789801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 351 - 384
Target Start/End: Original strand, 49822917 - 49822950
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattc 384  Q
    ||||||||||||||||||||||||||||||||||    
T  49822917 gggtgtgtttgtttcaagttataattgttgattc 49822950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 351 - 383
Target Start/End: Original strand, 1597342 - 1597374
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgatt 383  Q
    |||||||||||||||||||||||||||||||||    
T  1597342 gggtgtgtttgtttcaagttataattgttgatt 1597374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 351 - 383
Target Start/End: Complemental strand, 8332086 - 8332054
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgatt 383  Q
    |||||||||||||||||||||||||||||||||    
T  8332086 gggtgtgtttgtttcaagttataattgttgatt 8332054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 353 - 385
Target Start/End: Original strand, 9831872 - 9831904
Alignment:
Q  353 gtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||    
T  9831872 gtgtgtttgtttcaagttataattgttgattcc 9831904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 351 - 383
Target Start/End: Original strand, 12190177 - 12190209
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgatt 383  Q
    |||||||||||||||||||||||||||||||||    
T  12190177 gggtgtgtttgtttcaagttataattgttgatt 12190209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 350 - 385
Target Start/End: Complemental strand, 14788796 - 14788761
Alignment:
Q  350 tgggtgtgtttgtttcaagttataattgttgattcc 385  Q
    ||||||||||||||||||||||||||| ||||||||    
T  14788796 tgggtgtgtttgtttcaagttataatttttgattcc 14788761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 354 - 385
Target Start/End: Complemental strand, 36361851 - 36361820
Alignment:
Q  354 tgtgtttgtttcaagttataattgttgattcc 385  Q
    ||||||||||||||||||||||||||||||||    
T  36361851 tgtgtttgtttcaagttataattgttgattcc 36361820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 354 - 385
Target Start/End: Original strand, 51445083 - 51445114
Alignment:
Q  354 tgtgtttgtttcaagttataattgttgattcc 385  Q
    ||||||||||||||||||||||||||||||||    
T  51445083 tgtgtttgtttcaagttataattgttgattcc 51445114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 351 - 385
Target Start/End: Complemental strand, 1007819 - 1007785
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    ||||||||||||||||||||||| |||||||||||    
T  1007819 gggtgtgtttgtttcaagttatatttgttgattcc 1007785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 351 - 385
Target Start/End: Original strand, 5518504 - 5518538
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    ||||||||||||||||||||||| |||||||||||    
T  5518504 gggtgtgtttgtttcaagttatatttgttgattcc 5518538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 351 - 385
Target Start/End: Complemental strand, 29091738 - 29091704
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    ||||||||||||||||||||||| |||||||||||    
T  29091738 gggtgtgtttgtttcaagttatatttgttgattcc 29091704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 353 - 383
Target Start/End: Complemental strand, 32824992 - 32824962
Alignment:
Q  353 gtgtgtttgtttcaagttataattgttgatt 383  Q
    |||||||||||||||||||||||||||||||    
T  32824992 gtgtgtttgtttcaagttataattgttgatt 32824962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 351 - 385
Target Start/End: Complemental strand, 35187528 - 35187494
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||| ||||||||||||||||||||||||    
T  35187528 gggtgtgtttttttcaagttataattgttgattcc 35187494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 355 - 385
Target Start/End: Original strand, 38964683 - 38964713
Alignment:
Q  355 gtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||    
T  38964683 gtgtttgtttcaagttataattgttgattcc 38964713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 350 - 385
Target Start/End: Original strand, 10896216 - 10896251
Alignment:
Q  350 tgggtgtgtttgtttcaagttataattgttgattcc 385  Q
    ||||||||||||||||||||||||||||||||||||    
T  10896216 tgggtgtgtttgtttcaagttataattgttgattcc 10896251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 385
Target Start/End: Original strand, 1554354 - 1554388
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||    
T  1554354 gggtgtgtttgtttcaagttataattgttgattcc 1554388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 385
Target Start/End: Complemental strand, 12710716 - 12710682
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||    
T  12710716 gggtgtgtttgtttcaagttataattgttgattcc 12710682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 385
Target Start/End: Original strand, 18726619 - 18726653
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||    
T  18726619 gggtgtgtttgtttcaagttataattgttgattcc 18726653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 385
Target Start/End: Complemental strand, 25837982 - 25837948
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||    
T  25837982 gggtgtgtttgtttcaagttataattgttgattcc 25837948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 385
Target Start/End: Original strand, 32660933 - 32660967
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||    
T  32660933 gggtgtgtttgtttcaagttataattgttgattcc 32660967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 385
Target Start/End: Original strand, 35818424 - 35818458
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||    
T  35818424 gggtgtgtttgtttcaagttataattgttgattcc 35818458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 385
Target Start/End: Complemental strand, 38364152 - 38364118
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||    
T  38364152 gggtgtgtttgtttcaagttataattgttgattcc 38364118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 351 - 384
Target Start/End: Complemental strand, 26062215 - 26062182
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattc 384  Q
    ||||||||||||||||||||||||||||||||||    
T  26062215 gggtgtgtttgtttcaagttataattgttgattc 26062182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 351 - 384
Target Start/End: Original strand, 38132737 - 38132770
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattc 384  Q
    ||||||||||||||||||||||||||||||||||    
T  38132737 gggtgtgtttgtttcaagttataattgttgattc 38132770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 352 - 385
Target Start/End: Complemental strand, 42755937 - 42755904
Alignment:
Q  352 ggtgtgtttgtttcaagttataattgttgattcc 385  Q
    ||||||||||||||||||||||||||||||||||    
T  42755937 ggtgtgtttgtttcaagttataattgttgattcc 42755904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 353 - 385
Target Start/End: Complemental strand, 8635703 - 8635671
Alignment:
Q  353 gtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||    
T  8635703 gtgtgtttgtttcaagttataattgttgattcc 8635671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 351 - 383
Target Start/End: Original strand, 16313507 - 16313539
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgatt 383  Q
    |||||||||||||||||||||||||||||||||    
T  16313507 gggtgtgtttgtttcaagttataattgttgatt 16313539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 355 - 385
Target Start/End: Complemental strand, 7931306 - 7931276
Alignment:
Q  355 gtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||    
T  7931306 gtgtttgtttcaagttataattgttgattcc 7931276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 351 - 385
Target Start/End: Original strand, 37392546 - 37392580
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||| ||||||||||||||||||||||||||||    
T  37392546 gggtgtatttgtttcaagttataattgttgattcc 37392580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 351 - 385
Target Start/End: Original strand, 40197076 - 40197110
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||| ||||||||||||||||||||||||||||||    
T  40197076 gggtatgtttgtttcaagttataattgttgattcc 40197110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 351 - 385
Target Start/End: Original strand, 41228714 - 41228748
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    ||||||||||||||||||||||||||||| |||||    
T  41228714 gggtgtgtttgtttcaagttataattgttaattcc 41228748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 352 - 385
Target Start/End: Original strand, 33444627 - 33444660
Alignment:
Q  352 ggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||| |||||||||||    
T  33444627 ggtgtgtttgtttcaagttatatttgttgattcc 33444660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 385
Target Start/End: Complemental strand, 3050074 - 3050046
Alignment:
Q  357 gtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||    
T  3050074 gtttgtttcaagttataattgttgattcc 3050046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 351 - 383
Target Start/End: Complemental strand, 7317444 - 7317412
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgatt 383  Q
    ||||||||||||||||||||||| |||||||||    
T  7317444 gggtgtgtttgtttcaagttatatttgttgatt 7317412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 350 - 385
Target Start/End: Complemental strand, 38544266 - 38544231
Alignment:
Q  350 tgggtgtgtttgtttcaagttataattgttgattcc 385  Q
    ||||||||||||||||||||||||||||||||||||    
T  38544266 tgggtgtgtttgtttcaagttataattgttgattcc 38544231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 349 - 384
Target Start/End: Complemental strand, 40212962 - 40212927
Alignment:
Q  349 atgggtgtgtttgtttcaagttataattgttgattc 384  Q
    ||||||||||||||||||||||||||||||||||||    
T  40212962 atgggtgtgtttgtttcaagttataattgttgattc 40212927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 385
Target Start/End: Original strand, 8419589 - 8419623
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||    
T  8419589 gggtgtgtttgtttcaagttataattgttgattcc 8419623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 385
Target Start/End: Original strand, 9814218 - 9814252
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||    
T  9814218 gggtgtgtttgtttcaagttataattgttgattcc 9814252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 385
Target Start/End: Complemental strand, 11330064 - 11330030
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||    
T  11330064 gggtgtgtttgtttcaagttataattgttgattcc 11330030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 385
Target Start/End: Original strand, 27213855 - 27213889
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||    
T  27213855 gggtgtgtttgtttcaagttataattgttgattcc 27213889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 385
Target Start/End: Complemental strand, 27248364 - 27248330
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||    
T  27248364 gggtgtgtttgtttcaagttataattgttgattcc 27248330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 385
Target Start/End: Complemental strand, 33378913 - 33378879
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||    
T  33378913 gggtgtgtttgtttcaagttataattgttgattcc 33378879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 385
Target Start/End: Complemental strand, 39554254 - 39554220
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||    
T  39554254 gggtgtgtttgtttcaagttataattgttgattcc 39554220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 349 - 383
Target Start/End: Complemental strand, 44566118 - 44566084
Alignment:
Q  349 atgggtgtgtttgtttcaagttataattgttgatt 383  Q
    |||||||||||||||||||||||||||||||||||    
T  44566118 atgggtgtgtttgtttcaagttataattgttgatt 44566084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 385
Target Start/End: Original strand, 48160591 - 48160625
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||    
T  48160591 gggtgtgtttgtttcaagttataattgttgattcc 48160625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 385
Target Start/End: Complemental strand, 48314193 - 48314159
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||    
T  48314193 gggtgtgtttgtttcaagttataattgttgattcc 48314159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 352 - 385
Target Start/End: Original strand, 41632365 - 41632398
Alignment:
Q  352 ggtgtgtttgtttcaagttataattgttgattcc 385  Q
    ||||||||||||||||||||||||||||||||||    
T  41632365 ggtgtgtttgtttcaagttataattgttgattcc 41632398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 352 - 385
Target Start/End: Complemental strand, 43949315 - 43949282
Alignment:
Q  352 ggtgtgtttgtttcaagttataattgttgattcc 385  Q
    ||||||||||||||||||||||||||||||||||    
T  43949315 ggtgtgtttgtttcaagttataattgttgattcc 43949282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 351 - 383
Target Start/End: Original strand, 35488189 - 35488221
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgatt 383  Q
    |||||||||||||||||||||||||||||||||    
T  35488189 gggtgtgtttgtttcaagttataattgttgatt 35488221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 352 - 384
Target Start/End: Original strand, 45265049 - 45265081
Alignment:
Q  352 ggtgtgtttgtttcaagttataattgttgattc 384  Q
    |||||||||||||||||||||||||||||||||    
T  45265049 ggtgtgtttgtttcaagttataattgttgattc 45265081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 349 - 384
Target Start/End: Complemental strand, 45440981 - 45440946
Alignment:
Q  349 atgggtgtgtttgtttcaagttataattgttgattc 384  Q
    |||||||||||||||||||||||||||||| |||||    
T  45440981 atgggtgtgtttgtttcaagttataattgtagattc 45440946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 354 - 385
Target Start/End: Complemental strand, 48341430 - 48341399
Alignment:
Q  354 tgtgtttgtttcaagttataattgttgattcc 385  Q
    ||||||||||||||||||||||||||||||||    
T  48341430 tgtgtttgtttcaagttataattgttgattcc 48341399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 351 - 385
Target Start/End: Original strand, 16825354 - 16825388
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    ||||||||||||||||||||||||||||| |||||    
T  16825354 gggtgtgtttgtttcaagttataattgttaattcc 16825388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 351 - 385
Target Start/End: Original strand, 25924637 - 25924671
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||| ||||||||||||||||||||||||||||||    
T  25924637 gggtatgtttgtttcaagttataattgttgattcc 25924671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 351 - 385
Target Start/End: Original strand, 27419224 - 27419258
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    ||||||||||||||||||||||||||| |||||||    
T  27419224 gggtgtgtttgtttcaagttataattgctgattcc 27419258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 351 - 385
Target Start/End: Original strand, 28904186 - 28904220
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||| ||||||||||||||||||||    
T  28904186 gggtgtgtttgttttaagttataattgttgattcc 28904220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 351 - 385
Target Start/End: Original strand, 41684022 - 41684056
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    ||||||||||||||||||||||| |||||||||||    
T  41684022 gggtgtgtttgtttcaagttatatttgttgattcc 41684056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 353 - 383
Target Start/End: Complemental strand, 44820323 - 44820293
Alignment:
Q  353 gtgtgtttgtttcaagttataattgttgatt 383  Q
    |||||||||||||||||||||||||||||||    
T  44820323 gtgtgtttgtttcaagttataattgttgatt 44820293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 351 - 385
Target Start/End: Complemental strand, 45045697 - 45045663
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||| ||||||||||||||||||||    
T  45045697 gggtgtgtttgttttaagttataattgttgattcc 45045663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 384
Target Start/End: Original strand, 25045618 - 25045651
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattc 384  Q
    ||||||||||||||||||||||| ||||||||||    
T  25045618 gggtgtgtttgtttcaagttatatttgttgattc 25045651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 352 - 385
Target Start/End: Complemental strand, 45723277 - 45723244
Alignment:
Q  352 ggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||| |||||||||||    
T  45723277 ggtgtgtttgtttcaagttatatttgttgattcc 45723244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 351 - 383
Target Start/End: Complemental strand, 25098140 - 25098108
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgatt 383  Q
    |||||||||||||||||||||||||| ||||||    
T  25098140 gggtgtgtttgtttcaagttataatttttgatt 25098108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 352 - 384
Target Start/End: Original strand, 30685993 - 30686025
Alignment:
Q  352 ggtgtgtttgtttcaagttataattgttgattc 384  Q
    ||||||||||||||||||||||||||| |||||    
T  30685993 ggtgtgtttgtttcaagttataattgtagattc 30686025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 385
Target Start/End: Complemental strand, 201996 - 201962
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||    
T  201996 gggtgtgtttgtttcaagttataattgttgattcc 201962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 385
Target Start/End: Original strand, 555706 - 555740
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||    
T  555706 gggtgtgtttgtttcaagttataattgttgattcc 555740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 385
Target Start/End: Original strand, 4765560 - 4765594
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||    
T  4765560 gggtgtgtttgtttcaagttataattgttgattcc 4765594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 385
Target Start/End: Original strand, 12970530 - 12970564
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||    
T  12970530 gggtgtgtttgtttcaagttataattgttgattcc 12970564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 385
Target Start/End: Original strand, 19065505 - 19065539
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||    
T  19065505 gggtgtgtttgtttcaagttataattgttgattcc 19065539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 385
Target Start/End: Original strand, 22935912 - 22935946
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||    
T  22935912 gggtgtgtttgtttcaagttataattgttgattcc 22935946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 385
Target Start/End: Complemental strand, 28602626 - 28602592
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||    
T  28602626 gggtgtgtttgtttcaagttataattgttgattcc 28602592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 385
Target Start/End: Original strand, 29543015 - 29543049
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||||||    
T  29543015 gggtgtgtttgtttcaagttataattgttgattcc 29543049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 350 - 383
Target Start/End: Complemental strand, 36703946 - 36703913
Alignment:
Q  350 tgggtgtgtttgtttcaagttataattgttgatt 383  Q
    ||||||||||||||||||||||||||||||||||    
T  36703946 tgggtgtgtttgtttcaagttataattgttgatt 36703913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 351 - 383
Target Start/End: Original strand, 14206821 - 14206853
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgatt 383  Q
    |||||||||||||||||||||||||||||||||    
T  14206821 gggtgtgtttgtttcaagttataattgttgatt 14206853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 354 - 385
Target Start/End: Original strand, 11855658 - 11855689
Alignment:
Q  354 tgtgtttgtttcaagttataattgttgattcc 385  Q
    ||||||||||||||||||||||||||||||||    
T  11855658 tgtgtttgtttcaagttataattgttgattcc 11855689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 355 - 385
Target Start/End: Complemental strand, 6091782 - 6091752
Alignment:
Q  355 gtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||||||||    
T  6091782 gtgtttgtttcaagttataattgttgattcc 6091752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 351 - 385
Target Start/End: Complemental strand, 18412280 - 18412246
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||||||||||||||||| ||||||||    
T  18412280 gggtgtgtttgtttcaagttataattattgattcc 18412246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 351 - 383
Target Start/End: Complemental strand, 27481428 - 27481396
Alignment:
Q  351 gggtgtgtttgtttcaagttataattgttgatt 383  Q
    |||||||||||||||||||||||||| ||||||    
T  27481428 gggtgtgtttgtttcaagttataatttttgatt 27481396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 353 - 385
Target Start/End: Complemental strand, 32536006 - 32535974
Alignment:
Q  353 gtgtgtttgtttcaagttataattgttgattcc 385  Q
    |||||||||||| ||||||||||||||||||||    
T  32536006 gtgtgtttgttttaagttataattgttgattcc 32535974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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