View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21255_low_15 (Length: 369)
Name: NF21255_low_15
Description: NF21255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21255_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 11 - 353
Target Start/End: Original strand, 45743973 - 45744315
Alignment:
| Q |
11 |
agaatatcaaacagtctttgtcgtgaaacgggcatccaaacagatgttgcagcgctgagcacaataccgggaggctcgccagggtcatcaacatttttcc |
110 |
Q |
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| T |
45743973 |
agaaaatcaaacagtctttgtcgtgaaacgggcatccaaacagatgttgcagcgctgagcacaataccgggaggctcgccagggtcatcaacatttttcc |
45744072 |
T |
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| Q |
111 |
tagtcataactctcatgtcatcactcagagtccccatttggaggctgtcccattttctagcagatgaagcacaaaccccggaacagaagttgttggtcat |
210 |
Q |
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| T |
45744073 |
tagtcataactctcatgtcatcactcagagtccccatttggaggctgtcccattttctagcagatgaagcacaaaccccggaacagaagttgttggtcat |
45744172 |
T |
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| Q |
211 |
acgttgtgccagcttcaacatgcttcttcgaccagcttggctcaaggctgcaaaatcaaaatgccaaatttacaccatttaattagtagttaacaagtga |
310 |
Q |
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| T |
45744173 |
acgttgtgccagcttcaacatgcttcttcgaccagcttggctcaaggctgcaaaatcaaaatgccaaatttacaccatttaattagtagttaacaaatga |
45744272 |
T |
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| Q |
311 |
ttagaaaatataacgatttaaattcatgcatgtgatttgtttt |
353 |
Q |
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| T |
45744273 |
ttagaaaatataacgatttaaattcatgcatgtgatttgtttt |
45744315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 236
Target Start/End: Original strand, 12323156 - 12323213
Alignment:
| Q |
179 |
gcacaaaccccggaacagaagttgttggtcatacgttgtgccagcttcaacatgcttc |
236 |
Q |
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| T |
12323156 |
gcacagacaccggcacagaagttgttagtcattcgttgtgcaagcttcagcatgcttc |
12323213 |
T |
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