View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21255_low_16 (Length: 360)
Name: NF21255_low_16
Description: NF21255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21255_low_16 |
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| [»] scaffold0638 (1 HSPs) |
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| [»] scaffold0451 (1 HSPs) |
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Alignment Details
Target: scaffold0638 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: scaffold0638
Description:
Target: scaffold0638; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 8 - 349
Target Start/End: Complemental strand, 5818 - 5483
Alignment:
| Q |
8 |
aagcaaaggatgaccagacaatataatcactcactactaagatcatataccctctgagttcaggattgcaatgtgaagtgtgtactattgtgtatgaaac |
107 |
Q |
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| T |
5818 |
aagcaaaggatgaccagacaatataatcactcactactaagatcatataccctctgagttcaggattgcaatgtgaagtgtgtactattgtgtatgaaac |
5719 |
T |
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| Q |
108 |
aacagatatctcgataaaatttgtagccaaatttctcctataattatgacgtctacgaagaaagaaatagagatgggaaattttgagatgaaatgatgca |
207 |
Q |
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| T |
5718 |
aacagatatctcgataaaatttgtagccaaatttctcctataattatgatgtctacgaagaaagaaatagagatgggaaattttgagatgaaatgatgca |
5619 |
T |
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| Q |
208 |
ttaattgcaactagaagctactatgttatggaaacatgtaagtgtaacctttaaagaaaaataggacaaaacttatgtgtatttccttatgtgttttcct |
307 |
Q |
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| T |
5618 |
ttaattgcaactagaagctactatgttatggaaacat------gtaacctttaaagaaaaataggacaaaacttatgtgtatttccttacgtgttttcgt |
5525 |
T |
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| Q |
308 |
ttggtttttgacataaaatccacttttagtggttgtttgtga |
349 |
Q |
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| T |
5524 |
atggtttttgacataaaatccacttttagtggttgtttgtga |
5483 |
T |
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Target: scaffold0451 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0451
Description:
Target: scaffold0451; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 164 - 237
Target Start/End: Original strand, 7711 - 7784
Alignment:
| Q |
164 |
gaagaaagaaatagagatgggaaattttgagatgaaatgatgcattaattgcaactagaagctactatgttatg |
237 |
Q |
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| T |
7711 |
gaagaaataaatagacatgggaaacttagagatgaaattatgcattaattgtcactagcagctactatgttatg |
7784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 209
Target Start/End: Complemental strand, 38258906 - 38258861
Alignment:
| Q |
164 |
gaagaaagaaatagagatgggaaattttgagatgaaatgatgcatt |
209 |
Q |
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| T |
38258906 |
gaagaaagaaatagatatgtgaaattttgagatgataagatgcatt |
38258861 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 304
Target Start/End: Complemental strand, 9626250 - 9626222
Alignment:
| Q |
276 |
aaacttatgtgtatttccttatgtgtttt |
304 |
Q |
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| T |
9626250 |
aaacttatgtgtatttccttatgtgtttt |
9626222 |
T |
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