View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21255_low_17 (Length: 357)
Name: NF21255_low_17
Description: NF21255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21255_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 204 - 331
Target Start/End: Complemental strand, 52000242 - 52000115
Alignment:
| Q |
204 |
tcactattatcattgatgtgttgttgcatttgagggatgctataaatgacactgagtgggcttggattcaaaacaacattctcattcaccatctcacttt |
303 |
Q |
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| T |
52000242 |
tcactattataattgatgtgttgttgcatttgagggatgctataaatgacactgagtgggcttggattcaaaacaacattctcattcaccatctcacttt |
52000143 |
T |
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| Q |
304 |
tcaacgtgttaattttgagattacaagc |
331 |
Q |
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| T |
52000142 |
taaacatgttaattttgtgattacaagc |
52000115 |
T |
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Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 106 - 205
Target Start/End: Complemental strand, 52000409 - 52000310
Alignment:
| Q |
106 |
tctagtggtattgttgaaaccaagctaaaagcataatttagtcatatgtttaaaactataaagcacatacgaggaatcatgtgtttaaaatccatctttc |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52000409 |
tctagtggtattgttgaaaccaagctaaaagcataatttagtcatatgtttaaaactataaagcacatacgaggaatcatgtgtttaaaatccatctttc |
52000310 |
T |
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