View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21255_low_18 (Length: 348)
Name: NF21255_low_18
Description: NF21255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21255_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 16 - 330
Target Start/End: Complemental strand, 23031822 - 23031508
Alignment:
| Q |
16 |
atgcacacagaaggactcaacaatgcaataaactccacaacagtcgtcgcagtcctcatagcaacggttgccttcgcagccatcttcactgtcccaggcc |
115 |
Q |
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| T |
23031822 |
atgcacacagaaggactcaacaatgcaataaactccacaacagtcgtcgcagtcctcatagcaacggttgccttcgcagccatcttcactgtcccaggcc |
23031723 |
T |
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| Q |
116 |
aattcgtggatgatccnnnnnnngttcgtaacggaaaatcccttggcgaagcaaacatagcttcagaacctgcgtttctagtattcatcgtgtttgattc |
215 |
Q |
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| T |
23031722 |
aattcgtggatgatccaaaaaaagttcgtaaaggaaaatcccttggcgaagcaaacatagcttcagaacctgcgtttctagtattcatcgtgtttgattc |
23031623 |
T |
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| Q |
216 |
ggttgcgcttttcatctccctcgcggttgtggtggttcaaacatcaatagttgttgttgaaagcaaagcaaagaaacaaatgatggctattattaacaaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23031622 |
ggttgcgcttttcatctccctcgcggttgtggtggttcaaacatcaatagttgttgttgaaagcaaagcaaagaaacaaatgatggctattattaacaaa |
23031523 |
T |
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| Q |
316 |
ctaatgtgggtagct |
330 |
Q |
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| T |
23031522 |
ctaatgtgggtagct |
23031508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 131
Target Start/End: Complemental strand, 41065382 - 41065273
Alignment:
| Q |
22 |
acagaaggactcaacaatgcaataaactccacaacagtcgtcgcagtcctcatagcaacggttgccttcgcagccatcttcactgtcccaggccaattcg |
121 |
Q |
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| T |
41065382 |
acagaaggactcaacaatgcaataaactcaacaaccgttgtggcagtactaatagcaacggttgcatttgctgcgattttcactgtccctggtcaatttg |
41065283 |
T |
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| Q |
122 |
tggatgatcc |
131 |
Q |
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| T |
41065282 |
ttgatgatcc |
41065273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 208 - 324
Target Start/End: Complemental strand, 41065196 - 41065080
Alignment:
| Q |
208 |
tttgattcggttgcgcttttcatctccctcgcggttgtggtggttcaaacatcaatagttgttgttgaaagcaaagcaaagaaacaaatgatggctatta |
307 |
Q |
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|||||||| |||| || ||||| || || || |||||||| |||||||| || | |||||| | |||||||||||||||||||||||| |||||| | |
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| T |
41065196 |
tttgattctattgcactcttcatttctctggctgttgtggttgttcaaacttcggttgttgttatcgaaagcaaagcaaagaaacaaatggcggctataa |
41065097 |
T |
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| Q |
308 |
ttaacaaactaatgtgg |
324 |
Q |
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|||| || ||||||||| |
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| T |
41065096 |
ttaataagctaatgtgg |
41065080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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