View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21255_low_19 (Length: 329)
Name: NF21255_low_19
Description: NF21255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21255_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 10 - 284
Target Start/End: Complemental strand, 45762857 - 45762583
Alignment:
| Q |
10 |
tttttaaaagcgcataaaccctaaatcttgggaggtctcaataaactatgagatgattttagatttatgtaaaaatttatatcgatgatatatacttata |
109 |
Q |
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| T |
45762857 |
tttttagaagcgcataaaccctaaatcttgggaggtctcaataaactatgagatgattttagatttatgtaaaaatttatatcgatgatatatacttata |
45762758 |
T |
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| Q |
110 |
gtacaaggacaaatttggaaaatatgaattggctaaaacaatattgaacaatgtaacatttgtgtaatattgcatcagtgtagtttgattactcctcata |
209 |
Q |
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| T |
45762757 |
gtccaaggacaaatttggaaaatatgaattggctaaaacaatattgaacgatgtaacatttgtgtaatattgcatcagtgtagtttgattactcctcata |
45762658 |
T |
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| Q |
210 |
acacaattataaaggttcaggataatttacactaagcatgaaaggaataatcaaacaagtttgatcatgtctttc |
284 |
Q |
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| T |
45762657 |
acacaattataaaggttcaggataatatacactaagcatgaaagggatgatcaaacaagtttgatcatctctttc |
45762583 |
T |
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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 91
Target Start/End: Original strand, 29889983 - 29890059
Alignment:
| Q |
14 |
taaaagcgcataaaccctaaatcttgggaggtctcaataaactatgagatgattttagatttatgtaaaaatttatat |
91 |
Q |
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|||||| ||||||||| | |||||||| |||||||||||| ||| | ||| ||||||||||| |||||||||||||| |
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| T |
29889983 |
taaaagtgcataaacctttaatcttggtaggtctcaataacatat-aaatggttttagatttacgtaaaaatttatat |
29890059 |
T |
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