View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21255_low_2 (Length: 700)
Name: NF21255_low_2
Description: NF21255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21255_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 668; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 668; E-Value: 0
Query Start/End: Original strand, 14 - 681
Target Start/End: Complemental strand, 23853078 - 23852411
Alignment:
| Q |
14 |
tcatcatttggttgcatggaacaagagaggaaagctcttcttgaaatcaaaggaagctttaatgatccattatttagactttcctcttggaaaggaaatg |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23853078 |
tcatcatttggttgcatggaacaagagaggaaagctcttcttgaaatcaaaggaagctttaatgatccattatttagactttcctcttggaaaggaaatg |
23852979 |
T |
|
| Q |
114 |
actgttgtaaatggaaaggtataagttgcagcaacatcacaggacatgttgtaaaaattgaccttaggaatccatgttacccacaaaaaggagaacaatt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23852978 |
actgttgtaaatggaaaggtataagttgcagcaacatcacaggacatgttgtaaaaattgaccttaggaatccatgttacccacaaaaaggagaacaatt |
23852879 |
T |
|
| Q |
214 |
tgattcaaactgtccctactcaaaatctaagcttgaagctcagtatatccatcctgctcattcacagttcaagtatcttagttatttggaccttagtgga |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23852878 |
tgattcaaactgtccctactcaaaatctaagcttgaagctcagtatatccatcctgctcattcacagttcaagtatcttagttatttggaccttagtgga |
23852779 |
T |
|
| Q |
314 |
aacaatttcaattcaagtccaataccaaagtttatccattctatgaatcagttacaatttctttctctctatgactcccatttgagtggtaagatcccaa |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23852778 |
aacaatttcaattcaagtccaataccaaagtttatccattctatgaatcagttacaatttctttctctctatgactcccatttgagtggtaagatcccaa |
23852679 |
T |
|
| Q |
414 |
ataaccttggaaacctcacaaaattgtcctttcttgatctcagtttcaatacttatttacactctgatgatgtcagttgggtttcaaaactttcattgct |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23852678 |
ataaccttggaaacctcacaaaattgtcctttcttgatctcagtttcaatacttatttacactctgatgatgtcagttgggtttcaaaactttcattgct |
23852579 |
T |
|
| Q |
514 |
ccaaaacctttacctgagtgatgtttttcttgggagggcacaaaatttgttcttcgtacttaacatgattccttctttgttagaattagacttgatgaac |
613 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23852578 |
ccaaaacctttacctgagtgatgtttttcttgggagggcacaaaatttgttcttcgtacttaacatgattccttctttgttagaattagacttgatgaac |
23852479 |
T |
|
| Q |
614 |
tgcagcataaccaagatgcacagtagtgatcataaactagttagttacacaaacttttctagtattaa |
681 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23852478 |
tgcagcataaccaagatgcacagtagtgatcataaactagttagttacacaaacttttctagtattaa |
23852411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 14 - 681
Target Start/End: Complemental strand, 23752377 - 23751710
Alignment:
| Q |
14 |
tcatcatttggttgcatggaacaagagaggaaagctcttcttgaaatcaaaggaagctttaatgatccattatttagactttcctcttggaaaggaaatg |
113 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||| ||||||||| |||||||||||||||||||| ||| ||| ||||||||||||||| ||||||||| |
|
|
| T |
23752377 |
tcatcatttggttgcatagaacaagagaggcaagcacttcttgaactcaaaggaagctttaatgatacatcattaagactttcctcttgggaaggaaatg |
23752278 |
T |
|
| Q |
114 |
actgttgtaaatggaaaggtataagttgcagcaacatcacaggacatgttgtaaaaattgaccttaggaatccatgttacccacaaaaaggagaacaatt |
213 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||| |||||||||| | || || ||| |
|
|
| T |
23752277 |
aatgttgtaaatggaaaggtataagttgcagcaacattacaggtcatgttgttaaaattgaccttaggaatccatgctacccacaaagaagaaaaaaata |
23752178 |
T |
|
| Q |
214 |
tgattcaaactgtccctactcaaaatctaagcttgaagctcagtatatccatcctgctcattcacagttcaagtatcttagttatttggaccttagtgga |
313 |
Q |
| |
|
| | ||||||||| | | ||||| ||||||| |||||| | |||||| | ||| |||| | || || |||||||| |||| |||||||||||| |
|
|
| T |
23752177 |
tcaatcaaactgttcattaacaaaaaataagcttaaagctccagaaatccatacatctctttcaaattttaaaaatcttagtaatttagaccttagtgga |
23752078 |
T |
|
| Q |
314 |
aacaatttcaattcaagtccaataccaaagtttatccattctatgaatcagttacaatttctttctctctatgactcccatttgagtggtaagatcccaa |
413 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||||| |||||||||||| |||| |||||| ||| ||| ||| |||||||||| | ||||||| |
|
|
| T |
23752077 |
aacaatttaaattcaagtccaataccaacatttatccatttaatgaatcagttaaaattcctttctatctctgattccaatttgagtggaataatcccaa |
23751978 |
T |
|
| Q |
414 |
ataaccttggaaacctcacaaaattgtcctttcttgatctcagtttcaatacttatttacactctgatgatgtcagttgggtttcaaaactttcattgct |
513 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
23751977 |
ataaccttagaaacctcacaaaattgaactttcttgatctcagtttaaattcttatttacactctgatgatgtaaattgggtttcaaaactttcattgct |
23751878 |
T |
|
| Q |
514 |
ccaaaacctttacctgagtgatgtttttcttgggagggcacaaaatttgttcttcgtacttaacatgattccttctttgttagaattagacttgatgaac |
613 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |||||||||||| ||| ||||||| |||| ||||||||||| |||||||||| |||| |||| |
|
|
| T |
23751877 |
ccaaaacctttaaatgagtgatgtttttcttgggaaggcacaaaatttattcaaggtacttaccatgcttccttctttgatagaattagaattgaagaac |
23751778 |
T |
|
| Q |
614 |
tgcagcataaccaagatgcacagtagtgatcataaactagttagttacacaaacttttctagtattaa |
681 |
Q |
| |
|
|| ||||||||||||||||||||| |||||| |||| |||||||||||||| |||||||||||||| |
|
|
| T |
23751777 |
tgaagcataaccaagatgcacagtcatgatcaacaacttgttagttacacaaatttttctagtattaa |
23751710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 14 - 681
Target Start/End: Complemental strand, 22619770 - 22619103
Alignment:
| Q |
14 |
tcatcatttggttgcatggaacaagagaggaaagctcttcttgaaatcaaaggaagctttaatgatccattatttagactttcctcttggaaaggaaatg |
113 |
Q |
| |
|
||||||||||||||| | |||||||||||| |||||||| | | | |||||||||||||||||||| ||| ||| ||||||||||||||| ||||||||| |
|
|
| T |
22619770 |
tcatcatttggttgcttagaacaagagaggcaagctcttttagcactcaaaggaagctttaatgatacatcattaagactttcctcttgggaaggaaatg |
22619671 |
T |
|
| Q |
114 |
actgttgtaaatggaaaggtataagttgcagcaacatcacaggacatgttgtaaaaattgaccttaggaatccatgttacccacaaaaaggagaacaatt |
213 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||| |||||||||| | || || ||| |
|
|
| T |
22619670 |
aatgttgtaaatggaaaggtataagttgcagcaacattacaggtcatgttataaaaattgaccttaggaatccatgctacccacaaagaagaaaaaaata |
22619571 |
T |
|
| Q |
214 |
tgattcaaactgtccctactcaaaatctaagcttgaagctcagtatatccatcctgctcattcacagttcaagtatcttagttatttggaccttagtgga |
313 |
Q |
| |
|
| | ||||||||| | | ||||| ||||||| |||||| | |||||| | ||| |||| | || || |||||||| |||| |||||||||||| |
|
|
| T |
22619570 |
tcaatcaaactgttcattaacaaaaaataagcttaaagctccagaaatccatacatctctttcaaattttaaaaatcttagtaatttagaccttagtgga |
22619471 |
T |
|
| Q |
314 |
aacaatttcaattcaagtccaataccaaagtttatccattctatgaatcagttacaatttctttctctctatgactcccatttgagtggtaagatcccaa |
413 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||||| |||||||||||| |||| |||||| ||| ||| ||| |||||||||| | ||||||| |
|
|
| T |
22619470 |
aacaatttaaattcaagtccaataccaacatttatccatttaatgaatcagttaaaattcctttctatctctgattccaatttgagtggaataatcccaa |
22619371 |
T |
|
| Q |
414 |
ataaccttggaaacctcacaaaattgtcctttcttgatctcagtttcaatacttatttacactctgatgatgtcagttgggtttcaaaactttcattgct |
513 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
22619370 |
ataaccttagaaacctcacaaaattgaactttcttgatctcagtttaaattcttatttacactctgatgatgtaaattgggtttcaaaactttcattgct |
22619271 |
T |
|
| Q |
514 |
ccaaaacctttacctgagtgatgtttttcttgggagggcacaaaatttgttcttcgtacttaacatgattccttctttgttagaattagacttgatgaac |
613 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| |||||||||||| ||| ||||||| |||| ||||||||||| |||||||||| |||| |||| |
|
|
| T |
22619270 |
ccaaaacctttacttgagtgatgtttttcttgggaaggcacaaaatttattcaaggtacttaccatgcttccttctttgatagaattagaattgaagaac |
22619171 |
T |
|
| Q |
614 |
tgcagcataaccaagatgcacagtagtgatcataaactagttagttacacaaacttttctagtattaa |
681 |
Q |
| |
|
|| ||||||||||||||||||||| |||||| |||| |||||||||||||| |||||||||||||| |
|
|
| T |
22619170 |
tgaagcataaccaagatgcacagtcatgatcaacaacttgttagttacacaaatttttctagtattaa |
22619103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University