View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21255_low_20 (Length: 322)
Name: NF21255_low_20
Description: NF21255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21255_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 111; Significance: 5e-56; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 16 - 126
Target Start/End: Original strand, 45146986 - 45147096
Alignment:
| Q |
16 |
acaacatgaaaaataacaatatctggttgaaacttccttccgacaagggtgggaaagagacaaaaatgccccactaactaagggctttttcgtcattgag |
115 |
Q |
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| T |
45146986 |
acaacatgaaaaataacaatatctggttgaaacttccttccgacaagggtgggaaagagacaaaaatgccccactaactaagggctttttcgtcattgag |
45147085 |
T |
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| Q |
116 |
taccattacat |
126 |
Q |
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| T |
45147086 |
taccattacat |
45147096 |
T |
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Target: chr2; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 157 - 299
Target Start/End: Original strand, 45147170 - 45147314
Alignment:
| Q |
157 |
tcgttctttgttgttgtaacttgaatccaaagtcacttattttctctgaattattaaatactcctatacgctttttctaaaaattatcatactaattaaa |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
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| T |
45147170 |
tcgttctttgttgttgtaacttgaatccaaagtcacttattttctctgaattattaaataatcc--tacgctttttctaaaaattatcatactaattaaa |
45147267 |
T |
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| Q |
257 |
gttacagtttg----taaatgacacaatatggttacggtgacattaa |
299 |
Q |
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| T |
45147268 |
gttacagtttgtaaataaatgacacaatatggttacggggacattaa |
45147314 |
T |
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