View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21255_low_3 (Length: 639)

Name: NF21255_low_3
Description: NF21255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21255_low_3
NF21255_low_3
[»] chr8 (43 HSPs)
chr8 (1-447)||(30344140-30344588)
chr8 (204-357)||(24848004-24848157)
chr8 (400-447)||(2680234-2680281)
chr8 (506-557)||(32574478-32574529)
chr8 (506-552)||(27015385-27015431)
chr8 (359-445)||(28940714-28940799)
chr8 (401-447)||(32569575-32569621)
chr8 (96-155)||(3753004-3753063)
chr8 (96-155)||(19251732-19251791)
chr8 (96-155)||(19324916-19324975)
chr8 (96-155)||(45288147-45288206)
chr8 (400-446)||(4631640-4631686)
chr8 (400-446)||(18375557-18375603)
chr8 (400-446)||(36778476-36778522)
chr8 (400-446)||(41158640-41158686)
chr8 (400-445)||(40586443-40586488)
chr8 (400-447)||(8160418-8160465)
chr8 (400-447)||(8763009-8763056)
chr8 (400-447)||(24055837-24055884)
chr8 (404-446)||(2961008-2961050)
chr8 (400-446)||(7391318-7391364)
chr8 (404-446)||(27272686-27272728)
chr8 (400-445)||(1945184-1945229)
chr8 (411-447)||(12249910-12249946)
chr8 (411-447)||(23626054-23626090)
chr8 (403-447)||(27273877-27273921)
chr8 (411-447)||(39445261-39445297)
chr8 (411-447)||(41908017-41908053)
chr8 (509-548)||(4638747-4638786)
chr8 (400-447)||(25361511-25361558)
chr8 (400-447)||(25833996-25834043)
chr8 (406-445)||(27244398-27244437)
chr8 (400-447)||(41978855-41978902)
chr8 (406-449)||(42060658-42060701)
chr8 (411-445)||(29434280-29434314)
chr8 (406-447)||(6300487-6300528)
chr8 (404-445)||(11697110-11697151)
chr8 (400-445)||(25345992-25346037)
chr8 (402-447)||(36597310-36597355)
chr8 (406-447)||(37029917-37029958)
chr8 (403-447)||(5836239-5836283)
chr8 (403-447)||(22332003-22332047)
chr8 (403-447)||(30827035-30827079)
[»] chr6 (35 HSPs)
chr6 (1-448)||(18985189-18985637)
chr6 (126-288)||(11682650-11682814)
chr6 (506-557)||(1619790-1619841)
chr6 (509-559)||(19962466-19962516)
chr6 (10-107)||(11681792-11681891)
chr6 (125-197)||(22978679-22978753)
chr6 (125-197)||(23809650-23809724)
chr6 (96-155)||(34324997-34325056)
chr6 (359-447)||(11681668-11681756)
chr6 (125-197)||(2628006-2628080)
chr6 (400-447)||(24447791-24447838)
chr6 (400-446)||(1363219-1363265)
chr6 (400-445)||(4110057-4110102)
chr6 (403-447)||(6966235-6966279)
chr6 (1-130)||(11681897-11682028)
chr6 (96-152)||(22977466-22977522)
chr6 (96-152)||(23810880-23810936)
chr6 (104-155)||(2626560-2626611)
chr6 (404-447)||(18389166-18389209)
chr6 (404-447)||(33319049-33319092)
chr6 (400-447)||(35160119-35160166)
chr6 (408-446)||(875535-875573)
chr6 (400-446)||(15043827-15043873)
chr6 (401-441)||(1615103-1615143)
chr6 (509-557)||(2634772-2634820)
chr6 (411-446)||(1932347-1932382)
chr6 (403-446)||(2522023-2522066)
chr6 (404-447)||(5753125-5753168)
chr6 (404-446)||(2624721-2624763)
chr6 (400-446)||(9978707-9978753)
chr6 (400-445)||(1222381-1222426)
chr6 (406-446)||(13456734-13456774)
chr6 (411-443)||(29737644-29737676)
chr6 (401-445)||(33979182-33979226)
chr6 (402-446)||(35041995-35042039)
[»] chr5 (33 HSPs)
chr5 (1-445)||(23919880-23920325)
chr5 (236-357)||(39952558-39952679)
chr5 (182-248)||(1190757-1190823)
chr5 (400-448)||(13596915-13596963)
chr5 (400-447)||(1685046-1685093)
chr5 (400-446)||(34719454-34719500)
chr5 (400-446)||(36884780-36884826)
chr5 (400-445)||(3086433-3086478)
chr5 (400-445)||(25695539-25695584)
chr5 (400-447)||(752054-752101)
chr5 (400-443)||(14387898-14387941)
chr5 (404-447)||(36366123-36366166)
chr5 (404-446)||(7863528-7863570)
chr5 (402-448)||(20350823-20350869)
chr5 (404-446)||(22602634-22602676)
chr5 (400-446)||(43136273-43136319)
chr5 (403-448)||(4883070-4883115)
chr5 (400-445)||(41693138-41693183)
chr5 (404-445)||(42819330-42819371)
chr5 (404-448)||(32977099-32977143)
chr5 (403-447)||(34373667-34373711)
chr5 (411-446)||(5620643-5620678)
chr5 (411-446)||(9702716-9702751)
chr5 (411-446)||(9809820-9809855)
chr5 (403-446)||(17997459-17997502)
chr5 (402-445)||(19395652-19395695)
chr5 (411-445)||(12702061-12702095)
chr5 (412-446)||(38041490-38041524)
chr5 (409-446)||(4802095-4802132)
chr5 (400-448)||(30181407-30181458)
chr5 (403-448)||(38935347-38935392)
chr5 (403-447)||(10511663-10511707)
chr5 (415-447)||(33931125-33931157)
[»] scaffold0001 (2 HSPs)
scaffold0001 (1-351)||(12508-12844)
scaffold0001 (400-444)||(12951-12995)
[»] chr7 (38 HSPs)
chr7 (1-219)||(33097948-33098170)
chr7 (207-357)||(25350593-25350743)
chr7 (207-357)||(25356287-25356437)
chr7 (96-155)||(42921787-42921846)
chr7 (400-449)||(691285-691334)
chr7 (400-448)||(21669229-21669277)
chr7 (400-447)||(39278234-39278281)
chr7 (400-446)||(31896813-31896859)
chr7 (400-446)||(39647981-39648027)
chr7 (10-111)||(25350211-25350313)
chr7 (10-111)||(25355905-25356007)
chr7 (400-443)||(9151415-9151458)
chr7 (404-446)||(12960607-12960649)
chr7 (401-447)||(17817716-17817762)
chr7 (400-446)||(24682277-24682323)
chr7 (400-446)||(27732952-27732998)
chr7 (400-445)||(4850449-4850494)
chr7 (400-445)||(17172890-17172935)
chr7 (49-130)||(25350319-25350400)
chr7 (49-130)||(25356013-25356094)
chr7 (400-445)||(44806574-44806619)
chr7 (408-448)||(272588-272628)
chr7 (411-447)||(9226019-9226055)
chr7 (412-448)||(49023321-49023357)
chr7 (400-443)||(25731126-25731169)
chr7 (411-446)||(38434277-38434312)
chr7 (400-445)||(7854965-7855011)
chr7 (411-445)||(15595432-15595466)
chr7 (411-445)||(23476587-23476621)
chr7 (404-446)||(27840514-27840556)
chr7 (400-446)||(29469214-29469260)
chr7 (401-446)||(19049240-19049285)
chr7 (406-447)||(47573331-47573372)
chr7 (411-447)||(11834955-11834991)
chr7 (509-557)||(12807766-12807814)
chr7 (411-447)||(21597942-21597978)
chr7 (411-447)||(42996948-42996984)
chr7 (400-447)||(48527407-48527457)
[»] chr4 (42 HSPs)
chr4 (506-559)||(35534411-35534464)
chr4 (400-445)||(5483030-5483075)
chr4 (400-447)||(35707656-35707703)
chr4 (400-446)||(2118187-2118233)
chr4 (400-445)||(574177-574222)
chr4 (400-445)||(3759276-3759321)
chr4 (400-445)||(12680630-12680675)
chr4 (400-445)||(39713496-39713541)
chr4 (403-446)||(5759341-5759384)
chr4 (400-447)||(9887269-9887316)
chr4 (408-447)||(27892642-27892681)
chr4 (400-447)||(29713820-29713867)
chr4 (400-447)||(39404590-39404637)
chr4 (400-446)||(8964830-8964876)
chr4 (404-446)||(15650485-15650527)
chr4 (400-446)||(16653191-16653237)
chr4 (400-446)||(30527587-30527633)
chr4 (49-130)||(1967648-1967729)
chr4 (404-445)||(43014591-43014632)
chr4 (403-447)||(2777221-2777265)
chr4 (403-447)||(22115352-22115396)
chr4 (403-447)||(41983530-41983574)
chr4 (509-556)||(1975481-1975528)
chr4 (403-446)||(5271601-5271644)
chr4 (402-445)||(8532222-8532265)
chr4 (404-447)||(19591081-19591124)
chr4 (403-446)||(21353963-21354006)
chr4 (400-447)||(37352097-37352144)
chr4 (400-447)||(37356996-37357043)
chr4 (400-447)||(51348063-51348110)
chr4 (403-445)||(14828803-14828845)
chr4 (408-445)||(1975398-1975435)
chr4 (404-445)||(3839095-3839136)
chr4 (406-447)||(15521071-15521112)
chr4 (404-445)||(16895950-16895991)
chr4 (402-447)||(28974008-28974053)
chr4 (400-446)||(36741797-36741845)
chr4 (404-445)||(56541766-56541807)
chr4 (14-107)||(1967543-1967638)
chr4 (403-447)||(23479823-23479867)
chr4 (400-436)||(24549419-24549455)
chr4 (403-447)||(38009207-38009251)
[»] chr1 (30 HSPs)
chr1 (400-447)||(29693384-29693431)
chr1 (96-155)||(47388909-47388968)
chr1 (400-447)||(4893964-4894011)
chr1 (400-447)||(10763584-10763631)
chr1 (400-447)||(42682588-42682635)
chr1 (400-446)||(29840689-29840735)
chr1 (400-446)||(38896811-38896857)
chr1 (400-446)||(52037390-52037436)
chr1 (400-447)||(1375978-1376025)
chr1 (404-447)||(3929746-3929789)
chr1 (400-447)||(19320419-19320466)
chr1 (400-447)||(22194466-22194513)
chr1 (404-447)||(28565428-28565471)
chr1 (400-447)||(29184476-29184523)
chr1 (408-447)||(48183174-48183213)
chr1 (400-446)||(24289200-24289246)
chr1 (400-446)||(28573156-28573202)
chr1 (400-446)||(33074231-33074277)
chr1 (400-445)||(33363568-33363613)
chr1 (405-446)||(47137860-47137901)
chr1 (411-447)||(28631818-28631854)
chr1 (412-447)||(23909714-23909749)
chr1 (402-445)||(24294867-24294910)
chr1 (403-446)||(44407293-44407336)
chr1 (404-446)||(20767556-20767598)
chr1 (403-445)||(31620598-31620640)
chr1 (400-446)||(46623376-46623422)
chr1 (411-448)||(13662116-13662153)
chr1 (415-447)||(45005717-45005749)
chr1 (406-446)||(50394966-50395006)
[»] chr3 (29 HSPs)
chr3 (509-559)||(44198153-44198203)
chr3 (400-448)||(41053800-41053848)
chr3 (400-447)||(8396762-8396809)
chr3 (400-447)||(22477902-22477949)
chr3 (400-446)||(4137399-4137445)
chr3 (400-446)||(35860998-35861044)
chr3 (403-446)||(18688673-18688716)
chr3 (400-447)||(26776432-26776479)
chr3 (400-443)||(42614239-42614282)
chr3 (401-447)||(5240985-5241031)
chr3 (400-446)||(11950990-11951036)
chr3 (400-446)||(26100777-26100823)
chr3 (404-445)||(188736-188777)
chr3 (402-447)||(50742294-50742339)
chr3 (399-439)||(12001433-12001473)
chr3 (411-446)||(21165930-21165965)
chr3 (411-445)||(22522278-22522312)
chr3 (412-446)||(22759056-22759090)
chr3 (400-446)||(24560111-24560157)
chr3 (403-445)||(39576533-39576575)
chr3 (400-446)||(55290396-55290442)
chr3 (411-448)||(16496384-16496421)
chr3 (404-445)||(30766506-30766547)
chr3 (400-445)||(52843181-52843226)
chr3 (403-448)||(52852741-52852786)
chr3 (404-447)||(15315271-15315315)
chr3 (411-447)||(19893178-19893214)
chr3 (402-446)||(52462214-52462258)
chr3 (415-447)||(54934745-54934777)
[»] chr2 (23 HSPs)
chr2 (400-445)||(45003662-45003707)
chr2 (404-447)||(30922096-30922139)
chr2 (400-447)||(42782670-42782717)
chr2 (400-446)||(4289027-4289073)
chr2 (404-448)||(7364780-7364824)
chr2 (400-447)||(15084296-15084343)
chr2 (400-447)||(28609949-28609996)
chr2 (400-446)||(9542629-9542675)
chr2 (400-445)||(9916707-9916752)
chr2 (400-445)||(25123429-25123474)
chr2 (408-445)||(25124044-25124081)
chr2 (403-448)||(26828459-26828504)
chr2 (400-445)||(44800651-44800696)
chr2 (403-447)||(33908191-33908235)
chr2 (412-447)||(1691425-1691460)
chr2 (403-446)||(5253294-5253337)
chr2 (400-443)||(19488272-19488315)
chr2 (403-445)||(11707573-11707615)
chr2 (400-446)||(19484616-19484662)
chr2 (402-444)||(25573918-25573960)
chr2 (406-447)||(6342727-6342768)
chr2 (400-448)||(10874396-10874444)
chr2 (415-447)||(37224026-37224058)
[»] scaffold0069 (1 HSPs)
scaffold0069 (400-447)||(14644-14691)
[»] scaffold0057 (1 HSPs)
scaffold0057 (400-446)||(17400-17446)
[»] scaffold0249 (1 HSPs)
scaffold0249 (404-448)||(24916-24960)
[»] scaffold0051 (2 HSPs)
scaffold0051 (400-448)||(55556-55604)
scaffold0051 (411-445)||(61720-61754)
[»] scaffold0484 (1 HSPs)
scaffold0484 (400-447)||(8174-8221)
[»] scaffold0381 (1 HSPs)
scaffold0381 (400-447)||(11228-11275)
[»] scaffold0103 (2 HSPs)
scaffold0103 (404-447)||(13023-13066)
scaffold0103 (509-557)||(5189-5237)
[»] scaffold0009 (1 HSPs)
scaffold0009 (400-446)||(139571-139617)
[»] scaffold0242 (1 HSPs)
scaffold0242 (403-447)||(2707-2751)
[»] scaffold0088 (1 HSPs)
scaffold0088 (411-447)||(52691-52727)
[»] scaffold0171 (1 HSPs)
scaffold0171 (403-446)||(29638-29681)
[»] scaffold0047 (1 HSPs)
scaffold0047 (403-445)||(25614-25656)
[»] scaffold0027 (1 HSPs)
scaffold0027 (404-446)||(143213-143255)
[»] scaffold0005 (1 HSPs)
scaffold0005 (403-445)||(10864-10906)
[»] scaffold0006 (2 HSPs)
scaffold0006 (411-448)||(151878-151915)
scaffold0006 (411-447)||(64401-64437)


Alignment Details
Target: chr8 (Bit Score: 374; Significance: 0; HSPs: 43)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 447
Target Start/End: Original strand, 30344140 - 30344588
Alignment:
Q  1 ctacaagaggacgacaagctgttactcgatttaggtgttcctcctacagt--tgtttgtggagttggtccttagaaatgatcttgcttgaagaaaagttc 98  Q
    |||||||||| ||||||||||||| |||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  30344140 ctacaagagggcgacaagctgttattcgatttaggtgttactcctacagtgttgtttgtggagttggtccttagaaatgatcttgcttgaagaaaagttc 30344239  T
Q  99 taaacttttggaaattgtacgctggcatgtatattttgtataatatttcgatgacaatgttttgaatgtggtttggatttagtaatccaacccttttttg 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30344240 taaacttttggaaattgtacgctggcatgtatattttgtataatatttcgatgacaatgttttgaatgtggtttggatttagtaatccaacccttttttg 30344339  T
Q  199 gtaaccaaccttaaattggttgtacactacatgacaacatctatatttctgttgtagtacattatgtacgcaatgacaataattgttatgctatctttta 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30344340 gtaaccaaccttaaattggttgtacactacatgacaacatctatatttctgttgtagtacattatgtacgcaatgacaataattgttatgctatctttta 30344439  T
Q  299 tgccatatcttagaccatgcatcacaaatattcggattatgtgaccttcgttcacaaatatctgtaatttgaacatctctcctttagaactannnnnnnn 398  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||            
T  30344440 tgccatgtcttagaccatgcatcacaaatattcggattatgtgaccttcattcacaaatatctgtaatttgaacatctctcctttagagctaattttttt 30344539  T
Q  399 gaaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    ||||||||||||||||||| |||| |||||||  |||||||||||||||    
T  30344540 gaaaaatacgtaattcaactcgtgcgaagcacatgtttgtaactagttt 30344588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 204 - 357
Target Start/End: Complemental strand, 24848157 - 24848004
Alignment:
Q  204 caaccttaaattggttgtacactacatgacaacatctatatttctgttgtagtacattatgtacgcaatgacaataattgttatgctatcttttatgcca 303  Q
    ||||||| |||||||||||||||||||| || ||||||||||| || || ||||| ||||||| | |||||||||  |||||||| ||||||| |||  |    
T  24848157 caaccttgaattggttgtacactacatggcagcatctatatttgtgctgcagtacgttatgtatgtaatgacaatggttgttatgttatctttgatgtta 24848058  T
Q  304 tatcttagaccatgcatcacaaatattcggattatgtgaccttcgttcacaaat 357  Q
    |  |||||||||||||||  |||||||||||||||| ||||||||||| |||||    
T  24848057 tgccttagaccatgcatcgtaaatattcggattatgcgaccttcgttctcaaat 24848004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 400 - 447
Target Start/End: Complemental strand, 2680281 - 2680234
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  2680281 aaaaatacgtaattcaacccgtgcgaagcacgggtttgtaactagttt 2680234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 506 - 557
Target Start/End: Complemental strand, 32574529 - 32574478
Alignment:
Q  506 accattttgcccttataggggtattttggtaaattagtaaatgttgcctttc 557  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  32574529 accattttgcccttataggggtattttggtaaattagtaattgctgcctttc 32574478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 506 - 552
Target Start/End: Complemental strand, 27015431 - 27015385
Alignment:
Q  506 accattttgcccttataggggtattttggtaaattagtaaatgttgc 552  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  27015431 accattttgcccttatgggggtattttggtaaattagtaaatgttgc 27015385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 359 - 445
Target Start/End: Complemental strand, 28940799 - 28940714
Alignment:
Q  359 tctgtaatttgaacatctctcctttagaactannnnnnnngaaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagt 445  Q
    |||||||||||||||||||||||||||||| |         |||| |||||||||||||||||| ||||||||||||||||||||||    
T  28940799 tctgtaatttgaacatctctcctttagaacaaatttttta-aaaagtacgtaattcaacccgtgcgaagcacgggtttgtaactagt 28940714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 401 - 447
Target Start/End: Complemental strand, 32569621 - 32569575
Alignment:
Q  401 aaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  32569621 aaaatacgtaattcaacccgtgcgaagcacgggtttgtaactagttt 32569575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 96 - 155
Target Start/End: Original strand, 3753004 - 3753063
Alignment:
Q  96 ttctaaacttttggaaattgtacgctggcatgtatattttgtataatatttcgatgacaa 155  Q
    |||||| |||||||||||||||   ||||||||||||||||||||||||||| |||||||    
T  3753004 ttctaatcttttggaaattgtattatggcatgtatattttgtataatatttcaatgacaa 3753063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 96 - 155
Target Start/End: Original strand, 19251732 - 19251791
Alignment:
Q  96 ttctaaacttttggaaattgtacgctggcatgtatattttgtataatatttcgatgacaa 155  Q
    |||||| |||||| ||||||||  |||||||||||||||||||||||||||| |||||||    
T  19251732 ttctaatcttttgaaaattgtattctggcatgtatattttgtataatatttcaatgacaa 19251791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 96 - 155
Target Start/End: Original strand, 19324916 - 19324975
Alignment:
Q  96 ttctaaacttttggaaattgtacgctggcatgtatattttgtataatatttcgatgacaa 155  Q
    |||||| |||||| ||||||||  |||||||||||||||||||||||||||| |||||||    
T  19324916 ttctaatcttttgaaaattgtattctggcatgtatattttgtataatatttcaatgacaa 19324975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 96 - 155
Target Start/End: Complemental strand, 45288206 - 45288147
Alignment:
Q  96 ttctaaacttttggaaattgtacgctggcatgtatattttgtataatatttcgatgacaa 155  Q
    |||||| |||||||||||||||   ||||||||||||||||||||||||||| |||||||    
T  45288206 ttctaatcttttggaaattgtattttggcatgtatattttgtataatatttcaatgacaa 45288147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 400 - 446
Target Start/End: Complemental strand, 4631686 - 4631640
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 446  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||||    
T  4631686 aaaaataggtaattcaacccgtgcgaagcacgggtttgtaactagtt 4631640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 400 - 446
Target Start/End: Complemental strand, 18375603 - 18375557
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 446  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||    
T  18375603 aaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagtt 18375557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 400 - 446
Target Start/End: Original strand, 36778476 - 36778522
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 446  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||    
T  36778476 aaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagtt 36778522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 400 - 446
Target Start/End: Original strand, 41158640 - 41158686
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 446  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||    
T  41158640 aaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagtt 41158686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 400 - 445
Target Start/End: Complemental strand, 40586488 - 40586443
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagt 445  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||    
T  40586488 aaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagt 40586443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 400 - 447
Target Start/End: Complemental strand, 8160465 - 8160418
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    |||||||||| ||||||||||||  |||||||||||||||||||||||    
T  8160465 aaaaatacgttattcaacccgtgcaaagcacgggtttgtaactagttt 8160418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 400 - 447
Target Start/End: Original strand, 8763009 - 8763056
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    |||||||||| ||||||||||||  |||||||||||||||||||||||    
T  8763009 aaaaatacgttattcaacccgtgcaaagcacgggtttgtaactagttt 8763056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 400 - 447
Target Start/End: Original strand, 24055837 - 24055884
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    |||||||||| |||||||| ||| ||||||||||||||||||||||||    
T  24055837 aaaaatacgttattcaacctgtgcgaagcacgggtttgtaactagttt 24055884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 404 - 446
Target Start/End: Complemental strand, 2961050 - 2961008
Alignment:
Q  404 atacgtaattcaacccgtgggaagcacgggtttgtaactagtt 446  Q
    |||||| |||||||||||| |||||||||||||||||||||||    
T  2961050 atacgttattcaacccgtgcgaagcacgggtttgtaactagtt 2961008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 400 - 446
Target Start/End: Original strand, 7391318 - 7391364
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 446  Q
    ||||| |||| |||||||||||| |||||||||||||||||||||||    
T  7391318 aaaaaaacgttattcaacccgtgcgaagcacgggtttgtaactagtt 7391364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 404 - 446
Target Start/End: Original strand, 27272686 - 27272728
Alignment:
Q  404 atacgtaattcaacccgtgggaagcacgggtttgtaactagtt 446  Q
    |||||| |||||||||||| |||||||||||||||||||||||    
T  27272686 atacgttattcaacccgtgcgaagcacgggtttgtaactagtt 27272728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 400 - 445
Target Start/End: Original strand, 1945184 - 1945229
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagt 445  Q
    |||||||||| ||||||||||||  |||||||||||||||||||||    
T  1945184 aaaaatacgttattcaacccgtgcaaagcacgggtttgtaactagt 1945229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 411 - 447
Target Start/End: Complemental strand, 12249946 - 12249910
Alignment:
Q  411 attcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    |||||||||||| ||||||||||||||||||||||||    
T  12249946 attcaacccgtgcgaagcacgggtttgtaactagttt 12249910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 411 - 447
Target Start/End: Complemental strand, 23626090 - 23626054
Alignment:
Q  411 attcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    |||||||||||| ||||||||||||||||||||||||    
T  23626090 attcaacccgtgcgaagcacgggtttgtaactagttt 23626054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 403 - 447
Target Start/End: Original strand, 27273877 - 27273921
Alignment:
Q  403 aatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    ||||||| ||| |||||||| ||||||||||||||||||||||||    
T  27273877 aatacgttattgaacccgtgcgaagcacgggtttgtaactagttt 27273921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 411 - 447
Target Start/End: Original strand, 39445261 - 39445297
Alignment:
Q  411 attcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    |||||||||||| ||||||||||||||||||||||||    
T  39445261 attcaacccgtgcgaagcacgggtttgtaactagttt 39445297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 411 - 447
Target Start/End: Original strand, 41908017 - 41908053
Alignment:
Q  411 attcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    |||||||||||| ||||||||||||||||||||||||    
T  41908017 attcaacccgtgcgaagcacgggtttgtaactagttt 41908053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 509 - 548
Target Start/End: Complemental strand, 4638786 - 4638747
Alignment:
Q  509 attttgcccttataggggtattttggtaaattagtaaatg 548  Q
    ||||||||||||||||||||||| |||||||||| |||||    
T  4638786 attttgcccttataggggtatttaggtaaattagaaaatg 4638747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 447
Target Start/End: Original strand, 25361511 - 25361558
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    ||||||| || ||||| |||||| ||||||||||||||||||||||||    
T  25361511 aaaaatatgttattcatcccgtgtgaagcacgggtttgtaactagttt 25361558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 447
Target Start/End: Complemental strand, 25834043 - 25833996
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    |||||||||| |||||| |||||  |||||||||||||||||||||||    
T  25834043 aaaaatacgttattcaatccgtgcaaagcacgggtttgtaactagttt 25833996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 445
Target Start/End: Complemental strand, 27244437 - 27244398
Alignment:
Q  406 acgtaattcaacccgtgggaagcacgggtttgtaactagt 445  Q
    ||||||||||||||||| |||||| |||||||||||||||    
T  27244437 acgtaattcaacccgtgcgaagcatgggtttgtaactagt 27244398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 447
Target Start/End: Original strand, 41978855 - 41978902
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    |||||||||| |||||||||||| |||||||| |||| ||||||||||    
T  41978855 aaaaatacgttattcaacccgtgcgaagcacgagtttctaactagttt 41978902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 449
Target Start/End: Complemental strand, 42060701 - 42060658
Alignment:
Q  406 acgtaattcaacccgtgggaagcacgggtttgtaactagtttgg 449  Q
    |||| ||| |||||||| ||||||||||||||||||||||||||    
T  42060701 acgttattgaacccgtgcgaagcacgggtttgtaactagtttgg 42060658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 411 - 445
Target Start/End: Original strand, 29434280 - 29434314
Alignment:
Q  411 attcaacccgtgggaagcacgggtttgtaactagt 445  Q
    |||||||||||| ||||||||||||||||||||||    
T  29434280 attcaacccgtgtgaagcacgggtttgtaactagt 29434314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 447
Target Start/End: Complemental strand, 6300528 - 6300487
Alignment:
Q  406 acgtaattcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    |||| ||| |||||||| ||||||||||||||||||||||||    
T  6300528 acgttattgaacccgtgcgaagcacgggtttgtaactagttt 6300487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 445
Target Start/End: Original strand, 11697110 - 11697151
Alignment:
Q  404 atacgtaattcaacccgtgggaagcacgggtttgtaactagt 445  Q
    |||||| ||||||||||||  |||||||||||||||||||||    
T  11697110 atacgttattcaacccgtgcaaagcacgggtttgtaactagt 11697151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 445
Target Start/End: Original strand, 25345992 - 25346037
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagt 445  Q
    |||||||||| |||||| ||||| |||||| |||||||||||||||    
T  25345992 aaaaatacgttattcaatccgtgcgaagcatgggtttgtaactagt 25346037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 447
Target Start/End: Complemental strand, 36597355 - 36597310
Alignment:
Q  402 aaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    ||||| || ||| |||||||| ||||||||||||||||||||||||    
T  36597355 aaatatgtcattgaacccgtgcgaagcacgggtttgtaactagttt 36597310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 447
Target Start/End: Original strand, 37029917 - 37029958
Alignment:
Q  406 acgtaattcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    |||| ||| |||||||| ||||||||||||||||||||||||    
T  37029917 acgttattgaacccgtgcgaagcacgggtttgtaactagttt 37029958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 403 - 447
Target Start/End: Original strand, 5836239 - 5836283
Alignment:
Q  403 aatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    ||||||| ||| |||||||| ||||||| ||||||||||||||||    
T  5836239 aatacgttattgaacccgtgcgaagcacaggtttgtaactagttt 5836283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #42
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 403 - 447
Target Start/End: Complemental strand, 22332047 - 22332003
Alignment:
Q  403 aatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    ||||||| ||| |||||||| ||||||||||| ||||||||||||    
T  22332047 aatacgttattgaacccgtgcgaagcacgggtctgtaactagttt 22332003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #43
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 403 - 447
Target Start/End: Original strand, 30827035 - 30827079
Alignment:
Q  403 aatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    ||||||| ||| |||||||  ||||||||||||||||||||||||    
T  30827035 aatacgttattgaacccgtacgaagcacgggtttgtaactagttt 30827079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 347; Significance: 0; HSPs: 35)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 448
Target Start/End: Complemental strand, 18985637 - 18985189
Alignment:
Q  1 ctacaagaggacgacaagctgttactcgatttaggtgttcctcctacagt--tgtttgtggagttggtccttagaaatgatcttgcttgaagaaaagttc 98  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||||  |||||||||||||||||| || ||||||||||||||||||||||||||    
T  18985637 ctacaagaggacgacaagctgctattcgatttaggtgttcctcctacagtgttgtttgtggagttggtccgtaaaaatgatcttgcttgaagaaaagttc 18985538  T
Q  99 taaacttttggaaattgtacgctggcatgtatattttgtataatatttcgatgacaatgttttgaatgtggtttggatttagtaatccaacccttttttg 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18985537 taaacttttggaaattgtacgctggcatgtatattttgtataatatttcgatgacaatgttttgaatgtggtttggatttagtaatccaacccttttttg 18985438  T
Q  199 gtaaccaaccttaaattggttgtacactacatgacaacatctatatttctgttgtagtacattatgtacgcaatgacaataattgttatgctatctttta 298  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |    
T  18985437 gtaaccaaccttaaattggttatacactacatgacaacatctatatttctgctggagtacattatgtacgcaatgacaataattgttatgctatctttaa 18985338  T
Q  299 tgccatatcttagaccatgcatcacaaatattcggattatgtgaccttcgttcacaaatatctgtaatttgaacatctctcctttagaactannnnnnnn 398  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||            
T  18985337 tgccatgtcttagaccatgcatcacaaatattcggattatgtgaccttcgttcacaaatatctgtaatttgaacatatctcctttagagttaatttttta 18985238  T
Q  399 gaaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtttg 448  Q
     ||||| | ||||||||||||||| |||||||||||||||||||||||||    
T  18985237 -aaaaacatgtaattcaacccgtgcgaagcacgggtttgtaactagtttg 18985189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 126 - 288
Target Start/End: Complemental strand, 11682814 - 11682650
Alignment:
Q  126 tgtatattttgtataatatttcgatgacaatgt-tttgaa-tgtggtttggatttagtaatccaacccttttttggtaaccaaccttaaattggttgtac 223  Q
    |||||||||||||||||||||| |||||||||| |||||| ||||||||||||||| |||||||||||||||||  ||| ||||||||||| ||||||      
T  11682814 tgtatattttgtataatatttcaatgacaatgtgtttgaaatgtggtttggatttaataatccaaccctttttttataatcaaccttaaataggttgttg 11682715  T
Q  224 actacatgacaacatctatatttctgttgtagtacattatgtacgcaatgacaataattgttatg 288  Q
     ||||||| || ||||||||| | ||||| ||||||||||||| | |||||||||| || |||||    
T  11682714 gctacatggcatcatctatatgtgtgttgcagtacattatgtatgaaatgacaatagttattatg 11682650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 506 - 557
Target Start/End: Complemental strand, 1619841 - 1619790
Alignment:
Q  506 accattttgcccttataggggtattttggtaaattagtaaatgttgcctttc 557  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  1619841 accattttgcccttataggggtattttggtaaattagtaattgttgcctttc 1619790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 509 - 559
Target Start/End: Original strand, 19962466 - 19962516
Alignment:
Q  509 attttgcccttataggggtattttggtaaattagtaaatgttgcctttccc 559  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  19962466 attttgcccttataggggtattttggtaaattagtaaatgctgcctttccc 19962516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 10 - 107
Target Start/End: Complemental strand, 11681891 - 11681792
Alignment:
Q  10 gacgacaagctgttactcgatttaggtgttcctcctaca--gttgtttgtggagttggtccttagaaatgatcttgcttgaagaaaagttctaaactttt 107  Q
    |||||||||||| || | |||||||||||||||||||||  ||||||||| ||| |||| | ||||||| ||||||||| ||||||| |||||| |||||    
T  11681891 gacgacaagctgctatttgatttaggtgttcctcctacaatgttgtttgttgaggtggttcgtagaaataatcttgctttaagaaaatttctaatctttt 11681792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 125 - 197
Target Start/End: Complemental strand, 22978753 - 22978679
Alignment:
Q  125 atgtatattttgtataatatttcgatgacaatgttttgaa--tgtggtttggatttagtaatccaaccctttttt 197  Q
    ||||||| ||||||||||||||||||||| |||| |||||  | |||||||||| ||||||||||||||||||||    
T  22978753 atgtataatttgtataatatttcgatgactatgtgttgaaattatggtttggatatagtaatccaaccctttttt 22978679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 125 - 197
Target Start/End: Original strand, 23809650 - 23809724
Alignment:
Q  125 atgtatattttgtataatatttcgatgacaatgttttgaa--tgtggtttggatttagtaatccaaccctttttt 197  Q
    ||||||| ||||||||||||||||||||| |||| |||||  | |||||||||| ||||||||||||||||||||    
T  23809650 atgtataatttgtataatatttcgatgactatgtgttgaaattatggtttggatatagtaatccaaccctttttt 23809724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 96 - 155
Target Start/End: Original strand, 34324997 - 34325056
Alignment:
Q  96 ttctaaacttttggaaattgtacgctggcatgtatattttgtataatatttcgatgacaa 155  Q
    |||||| |||||||||||||||  |||||||||||||||||||||||||||| |||||||    
T  34324997 ttctaatcttttggaaattgtattctggcatgtatattttgtataatatttcaatgacaa 34325056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 359 - 447
Target Start/End: Complemental strand, 11681756 - 11681668
Alignment:
Q  359 tctgtaatttgaacatctctcctttagaactannnnnnnngaaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    ||||||||||||||||||||||||||||   |         |||| |||||||||||||||||| ||||||||||||||||||||||||    
T  11681756 tctgtaatttgaacatctctcctttagagtaatttttttaaaaaagtacgtaattcaacccgtgcgaagcacgggtttgtaactagttt 11681668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 125 - 197
Target Start/End: Complemental strand, 2628080 - 2628006
Alignment:
Q  125 atgtatattttgtataatatttcgatgacaatgttttgaa--tgtggtttggatttagtaatccaaccctttttt 197  Q
    ||||||| |||||||||||||||||||||  ||| |||||  | |||||||||| ||||||||||||||||||||    
T  2628080 atgtataatttgtataatatttcgatgactgtgtgttgaaattatggtttggatatagtaatccaaccctttttt 2628006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 400 - 447
Target Start/End: Original strand, 24447791 - 24447838
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||    
T  24447791 aaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagttt 24447838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 400 - 446
Target Start/End: Original strand, 1363219 - 1363265
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 446  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||||    
T  1363219 aaaaatatgtaattcaacccgtgcgaagcacgggtttgtaactagtt 1363265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 400 - 445
Target Start/End: Original strand, 4110057 - 4110102
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagt 445  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||    
T  4110057 aaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagt 4110102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 403 - 447
Target Start/End: Complemental strand, 6966279 - 6966235
Alignment:
Q  403 aatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||    
T  6966279 aatacgttattcaacccgtgcgaagcacgggtttgtaactagttt 6966235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 11682028 - 11681897
Alignment:
Q  1 ctacaagaggacgacaagctgttactcgatttaggtgttcctcctaca--gttgtttgtggagttggtccttagaaatgatcttgcttgaagaaaagttc 98  Q
    ||||||||||||||||||  | || | ||||| |||||   |||||||  ||||||||| ||| |||| | ||||||| ||||||||| |||||||||||    
T  11682028 ctacaagaggacgacaagtagctatttgatttgggtgtctttcctacaatgttgtttgttgaggtggttcgtagaaataatcttgctttaagaaaagttc 11681929  T
Q  99 taaacttttggaaattgtacgctggcatgtat 130  Q
    ||| | ||||| | ||||| |||| |||||||    
T  11681928 taatcctttggcagttgtatgctgacatgtat 11681897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 152
Target Start/End: Complemental strand, 22977522 - 22977466
Alignment:
Q  96 ttctaaacttttggaaattgtacgctggcatgtatattttgtataatatttcgatga 152  Q
    |||||| |||||||||||||||   ||||||||||||||||||||||||||| ||||    
T  22977522 ttctaatcttttggaaattgtattttggcatgtatattttgtataatatttcaatga 22977466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 152
Target Start/End: Original strand, 23810880 - 23810936
Alignment:
Q  96 ttctaaacttttggaaattgtacgctggcatgtatattttgtataatatttcgatga 152  Q
    |||||| |||||||||||||||   ||||||||||||||||||||||||||| ||||    
T  23810880 ttctaatcttttggaaattgtattttggcatgtatattttgtataatatttcaatga 23810936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 104 - 155
Target Start/End: Complemental strand, 2626611 - 2626560
Alignment:
Q  104 ttttggaaattgtacgctggcatgtatattttgtataatatttcgatgacaa 155  Q
    ||||||||||||||   ||||||||||||||||||||||||||| |||||||    
T  2626611 ttttggaaattgtattttggcatgtatattttgtataatatttcaatgacaa 2626560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 404 - 447
Target Start/End: Complemental strand, 18389209 - 18389166
Alignment:
Q  404 atacgtaattcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    |||||| |||||||||||| ||||||||||||||||||||||||    
T  18389209 atacgttattcaacccgtgcgaagcacgggtttgtaactagttt 18389166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 404 - 447
Target Start/End: Original strand, 33319049 - 33319092
Alignment:
Q  404 atacgtaattcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    |||||| |||||||||||| ||||||||||||||||||||||||    
T  33319049 atacgttattcaacccgtgcgaagcacgggtttgtaactagttt 33319092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 400 - 447
Target Start/End: Original strand, 35160119 - 35160166
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    |||||||||| |||||||||||| ||||||||| ||||||||||||||    
T  35160119 aaaaatacgttattcaacccgtgcgaagcacggatttgtaactagttt 35160166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 408 - 446
Target Start/End: Original strand, 875535 - 875573
Alignment:
Q  408 gtaattcaacccgtgggaagcacgggtttgtaactagtt 446  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  875535 gtaattcaacccgtgcgaagcacgggtttgtaactagtt 875573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 400 - 446
Target Start/End: Complemental strand, 15043873 - 15043827
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 446  Q
    |||||||||| |||||| ||||| |||||||||||||||||||||||    
T  15043873 aaaaatacgttattcaatccgtgcgaagcacgggtttgtaactagtt 15043827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 401 - 441
Target Start/End: Complemental strand, 1615143 - 1615103
Alignment:
Q  401 aaaatacgtaattcaacccgtgggaagcacgggtttgtaac 441  Q
    |||||||||||||||||||||| |||||| |||||||||||    
T  1615143 aaaatacgtaattcaacccgtgtgaagcatgggtttgtaac 1615103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 509 - 557
Target Start/End: Complemental strand, 2634820 - 2634772
Alignment:
Q  509 attttgcccttataggggtattttggtaaattagtaaatgttgcctttc 557  Q
    |||||||||||| | ||||||||||||||||||||||||  ||||||||    
T  2634820 attttgcccttagaagggtattttggtaaattagtaaatcatgcctttc 2634772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 446
Target Start/End: Original strand, 1932347 - 1932382
Alignment:
Q  411 attcaacccgtgggaagcacgggtttgtaactagtt 446  Q
    |||||||||||| |||||||||||||||||||||||    
T  1932347 attcaacccgtgcgaagcacgggtttgtaactagtt 1932382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 446
Target Start/End: Original strand, 2522023 - 2522066
Alignment:
Q  403 aatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 446  Q
    ||||||| ||| |||||||| |||||||||||||||||||||||    
T  2522023 aatacgttattgaacccgtgcgaagcacgggtttgtaactagtt 2522066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 447
Target Start/End: Complemental strand, 5753168 - 5753125
Alignment:
Q  404 atacgtaattcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    |||||| |||||||||||| |||| |||||||||||||||||||    
T  5753168 atacgttattcaacccgtgcgaagtacgggtttgtaactagttt 5753125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 404 - 446
Target Start/End: Complemental strand, 2624763 - 2624721
Alignment:
Q  404 atacgtaattcaacccgtgggaagcacgggtttgtaactagtt 446  Q
    |||||| |||||||||||| || ||||||||||||||||||||    
T  2624763 atacgttattcaacccgtgcgatgcacgggtttgtaactagtt 2624721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 400 - 446
Target Start/End: Complemental strand, 9978753 - 9978707
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 446  Q
    ||||||| || |||||||||||| |||||||| ||||||||||||||    
T  9978753 aaaaatatgttattcaacccgtgcgaagcacgagtttgtaactagtt 9978707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 445
Target Start/End: Original strand, 1222381 - 1222426
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagt 445  Q
    |||||||||| |||||| || || ||||||||||||||||||||||    
T  1222381 aaaaatacgttattcaatccatgcgaagcacgggtttgtaactagt 1222426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 406 - 446
Target Start/End: Complemental strand, 13456774 - 13456734
Alignment:
Q  406 acgtaattcaacccgtgggaagcacgggtttgtaactagtt 446  Q
    |||| ||| |||||||| |||||||||||||||||||||||    
T  13456774 acgttattgaacccgtgcgaagcacgggtttgtaactagtt 13456734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 411 - 443
Target Start/End: Original strand, 29737644 - 29737676
Alignment:
Q  411 attcaacccgtgggaagcacgggtttgtaacta 443  Q
    |||||||||||| ||||||||||||||||||||    
T  29737644 attcaacccgtgcgaagcacgggtttgtaacta 29737676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 401 - 445
Target Start/End: Original strand, 33979182 - 33979226
Alignment:
Q  401 aaaatacgtaattcaacccgtgggaagcacgggtttgtaactagt 445  Q
    ||||||||| ||| |||||||| ||| ||||||||||||||||||    
T  33979182 aaaatacgttattaaacccgtgcgaaacacgggtttgtaactagt 33979226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 402 - 446
Target Start/End: Original strand, 35041995 - 35042039
Alignment:
Q  402 aaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 446  Q
    |||||||| ||| |||||||| ||| |||||||||||||||||||    
T  35041995 aaatacgttattgaacccgtgcgaaacacgggtttgtaactagtt 35042039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 344; Significance: 0; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 445
Target Start/End: Original strand, 23919880 - 23920325
Alignment:
Q  1 ctacaagaggacgacaagctgttactcgatttaggtgttcctcctacagt--tgtttgtggagttggtccttagaaatgatcttgcttgaagaaaagttc 98  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||||  |||||||||||||||||| || ||||||||||||||||||||||||||    
T  23919880 ctacaagaggacgacaagctgctattcgatttaggtgttcctcctacagtgttgtttgtggagttggtccgtaaaaatgatcttgcttgaagaaaagttc 23919979  T
Q  99 taaacttttggaaattgtacgctggcatgtatattttgtataatatttcgatgacaatgttttgaatgtggtttggatttagtaatccaacccttttttg 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23919980 taaacttttggaaattgtacgctggcatgtatattttgtataatatttcgatgacaatgttttgaatgtggtttggatttagtaatccaacccttttttg 23920079  T
Q  199 gtaaccaaccttaaattggttgtacactacatgacaacatctatatttctgttgtagtacattatgtacgcaatgacaataattgttatgctatctttta 298  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |    
T  23920080 gtaaccaaccttaaattggttatacactacatgacaacatctatatttctgctggagtacattatgtacgcaatgacaataattgttatgctatctttaa 23920179  T
Q  299 tgccatatcttagaccatgcatcacaaatattcggattatgtgaccttcgttcacaaatatctgtaatttgaacatctctcctttagaactannnnnnnn 398  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||            
T  23920180 tgccatgtcttagaccatgcatcacaaatattcggattatgtgaccttcgttcacaaatatctgtaatttgaacatatctcctttagagttaatttttta 23920279  T
Q  399 gaaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagt 445  Q
     ||||| | ||||||||||||||| ||||||||||||||||||||||    
T  23920280 -aaaaacatgtaattcaacccgtgcgaagcacgggtttgtaactagt 23920325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 236 - 357
Target Start/End: Original strand, 39952558 - 39952679
Alignment:
Q  236 catctatatttctgttgtagtacattatgtacgcaatgacaataattgttatgctatcttttatgccatatcttagaccatgcatcacaaatattcggat 335  Q
    ||||||||||| || || ||||||||||||| | |||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||    
T  39952558 catctatatttatgctgcagtacattatgtatgtaatgacaataattgttatgctatcttttatgccatgctttagaccatgcatcacaaatattcggat 39952657  T
Q  336 tatgtgaccttcgttcacaaat 357  Q
    |||| ||||||||||| |||||    
T  39952658 tatgcgaccttcgttctcaaat 39952679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 182 - 248
Target Start/End: Complemental strand, 1190823 - 1190757
Alignment:
Q  182 aatccaacccttttttggtaaccaaccttaaattggttgtacactacatgacaacatctatatttct 248  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||    
T  1190823 aatctaacccttttttggtaatcaaccttaaattggttgtacactacatgatagcatctatatttct 1190757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 400 - 448
Target Start/End: Original strand, 13596915 - 13596963
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtttg 448  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  13596915 aaaaatacgtaattcaacccgtgcgaagcacgggtttgtaactagtttg 13596963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 400 - 447
Target Start/End: Complemental strand, 1685093 - 1685046
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||    
T  1685093 aaaaatacataattcaacccgtgcgaagcacgggtttgtaactagttt 1685046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 400 - 446
Target Start/End: Original strand, 34719454 - 34719500
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 446  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||    
T  34719454 aaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagtt 34719500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 400 - 446
Target Start/End: Complemental strand, 36884826 - 36884780
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 446  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||    
T  36884826 aaaaatacgttattcaacccgtgtgaagcacgggtttgtaactagtt 36884780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 400 - 445
Target Start/End: Complemental strand, 3086478 - 3086433
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagt 445  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||    
T  3086478 aaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagt 3086433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 400 - 445
Target Start/End: Complemental strand, 25695584 - 25695539
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagt 445  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||    
T  25695584 aaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagt 25695539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 400 - 447
Target Start/End: Complemental strand, 752101 - 752054
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    |||||||||| ||||||||||||  |||||||||||||||||||||||    
T  752101 aaaaatacgttattcaacccgtgcaaagcacgggtttgtaactagttt 752054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 400 - 443
Target Start/End: Complemental strand, 14387941 - 14387898
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaacta 443  Q
    |||||||||| |||||||||||| ||||||||||||||||||||    
T  14387941 aaaaatacgttattcaacccgtgcgaagcacgggtttgtaacta 14387898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 404 - 447
Target Start/End: Complemental strand, 36366166 - 36366123
Alignment:
Q  404 atacgtaattcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    |||||| |||||||||||| ||||||||||||||||||||||||    
T  36366166 atacgttattcaacccgtgcgaagcacgggtttgtaactagttt 36366123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 404 - 446
Target Start/End: Complemental strand, 7863570 - 7863528
Alignment:
Q  404 atacgtaattcaacccgtgggaagcacgggtttgtaactagtt 446  Q
    |||||| |||||||||||| |||||||||||||||||||||||    
T  7863570 atacgttattcaacccgtgcgaagcacgggtttgtaactagtt 7863528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 402 - 448
Target Start/End: Original strand, 20350823 - 20350869
Alignment:
Q  402 aaatacgtaattcaacccgtgggaagcacgggtttgtaactagtttg 448  Q
    |||||||| ||| |||||||| |||||||||||||||||||||||||    
T  20350823 aaatacgttattgaacccgtgcgaagcacgggtttgtaactagtttg 20350869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 404 - 446
Target Start/End: Complemental strand, 22602676 - 22602634
Alignment:
Q  404 atacgtaattcaacccgtgggaagcacgggtttgtaactagtt 446  Q
    |||||| |||||||||||| |||||||||||||||||||||||    
T  22602676 atacgttattcaacccgtgcgaagcacgggtttgtaactagtt 22602634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 400 - 446
Target Start/End: Complemental strand, 43136319 - 43136273
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 446  Q
    |||||||||| ||||||||||||  ||||||||||||||||||||||    
T  43136319 aaaaatacgttattcaacccgtgcaaagcacgggtttgtaactagtt 43136273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 403 - 448
Target Start/End: Original strand, 4883070 - 4883115
Alignment:
Q  403 aatacgtaattcaacccgtgggaagcacgggtttgtaactagtttg 448  Q
    ||||||| ||| |||||||| |||||||||||||||||||||||||    
T  4883070 aatacgttattgaacccgtgcgaagcacgggtttgtaactagtttg 4883115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 400 - 445
Target Start/End: Original strand, 41693138 - 41693183
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagt 445  Q
    |||||||||| |||||||||||| |||||||| |||||||||||||    
T  41693138 aaaaatacgttattcaacccgtgcgaagcacgagtttgtaactagt 41693183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 404 - 445
Target Start/End: Complemental strand, 42819371 - 42819330
Alignment:
Q  404 atacgtaattcaacccgtgggaagcacgggtttgtaactagt 445  Q
    |||||| |||||||||||| ||||||||||||||||||||||    
T  42819371 atacgttattcaacccgtgcgaagcacgggtttgtaactagt 42819330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 404 - 448
Target Start/End: Complemental strand, 32977143 - 32977099
Alignment:
Q  404 atacgtaattcaacccgtgggaagcacgggtttgtaactagtttg 448  Q
    |||||| |||||||||||| ||||||| |||||||||||||||||    
T  32977143 atacgttattcaacccgtgcgaagcaccggtttgtaactagtttg 32977099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 403 - 447
Target Start/End: Complemental strand, 34373711 - 34373667
Alignment:
Q  403 aatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    ||||||| ||| |||||||| ||||||||||||||||||||||||    
T  34373711 aatacgttattaaacccgtgcgaagcacgggtttgtaactagttt 34373667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 446
Target Start/End: Complemental strand, 5620678 - 5620643
Alignment:
Q  411 attcaacccgtgggaagcacgggtttgtaactagtt 446  Q
    |||||||||||| |||||||||||||||||||||||    
T  5620678 attcaacccgtgcgaagcacgggtttgtaactagtt 5620643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 446
Target Start/End: Original strand, 9702716 - 9702751
Alignment:
Q  411 attcaacccgtgggaagcacgggtttgtaactagtt 446  Q
    |||||||||||| |||||||||||||||||||||||    
T  9702716 attcaacccgtgcgaagcacgggtttgtaactagtt 9702751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 446
Target Start/End: Complemental strand, 9809855 - 9809820
Alignment:
Q  411 attcaacccgtgggaagcacgggtttgtaactagtt 446  Q
    |||||||||||| |||||||||||||||||||||||    
T  9809855 attcaacccgtgcgaagcacgggtttgtaactagtt 9809820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 446
Target Start/End: Original strand, 17997459 - 17997502
Alignment:
Q  403 aatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 446  Q
    ||||||| ||| |||||||| |||||||||||||||||||||||    
T  17997459 aatacgttattgaacccgtgcgaagcacgggtttgtaactagtt 17997502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 445
Target Start/End: Original strand, 19395652 - 19395695
Alignment:
Q  402 aaatacgtaattcaacccgtgggaagcacgggtttgtaactagt 445  Q
    |||||||| ||| |||||||| ||||||||||||||||||||||    
T  19395652 aaatacgttattgaacccgtgcgaagcacgggtttgtaactagt 19395695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 411 - 445
Target Start/End: Complemental strand, 12702095 - 12702061
Alignment:
Q  411 attcaacccgtgggaagcacgggtttgtaactagt 445  Q
    |||||||||||| ||||||||||||||||||||||    
T  12702095 attcaacccgtgcgaagcacgggtttgtaactagt 12702061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 412 - 446
Target Start/End: Complemental strand, 38041524 - 38041490
Alignment:
Q  412 ttcaacccgtgggaagcacgggtttgtaactagtt 446  Q
    ||||||||||| |||||||||||||||||||||||    
T  38041524 ttcaacccgtgcgaagcacgggtttgtaactagtt 38041490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 446
Target Start/End: Complemental strand, 4802132 - 4802095
Alignment:
Q  409 taattcaacccgtgggaagcacgggtttgtaactagtt 446  Q
    |||| ||||||||| |||||||||||||||||||||||    
T  4802132 taatacaacccgtgcgaagcacgggtttgtaactagtt 4802095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 448
Target Start/End: Original strand, 30181407 - 30181458
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaa---gcacgggtttgtaactagtttg 448  Q
    |||||||||| |||||||||||| |||   ||||||||||||||||||||||    
T  30181407 aaaaatacgttattcaacccgtgcgaattcgcacgggtttgtaactagtttg 30181458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 448
Target Start/End: Original strand, 38935347 - 38935392
Alignment:
Q  403 aatacgtaattcaacccgtgggaagcacgggtttgtaactagtttg 448  Q
    ||||||| ||| |||||||  |||||||||||||||||||||||||    
T  38935347 aatacgttattgaacccgtacgaagcacgggtttgtaactagtttg 38935392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 403 - 447
Target Start/End: Complemental strand, 10511707 - 10511663
Alignment:
Q  403 aatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    ||||||| ||| |||||||| |||||||| |||||||||||||||    
T  10511707 aatacgttattgaacccgtgtgaagcacgagtttgtaactagttt 10511663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 415 - 447
Target Start/End: Original strand, 33931125 - 33931157
Alignment:
Q  415 aacccgtgggaagcacgggtttgtaactagttt 447  Q
    |||||||| ||||||||||||||||||||||||    
T  33931125 aacccgtgcgaagcacgggtttgtaactagttt 33931157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 170; Significance: 6e-91; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 12508 - 12844
Alignment:
Q  1 ctacaagaggacgacaagctgttactcgatttaggtgttcctcctaca--gttgtttgtggagttggtccttagaaatgatcttgcttgaagaaaagttc 98  Q
    |||||||||| |||||||||| || |||||||||||||||||||||||  ||||||| | ||| |||  | ||||||| ||||| |||||||||||||||    
T  12508 ctacaagagggcgacaagctgctattcgatttaggtgttcctcctacaatgttgtttcttgaggtggctcgtagaaattatcttacttgaagaaaagttc 12607  T
Q  99 taaacttttggaaattgtacgctggcatgtatattttgtataatatttcgatgaca--atgttttgaatgtggtttggatttagtaatccaacccttttt 196  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||| |||||||| ||||||||||||||||                
T  12608 taaacttttggaaattgtatgctggcatgtatattttgtataatatttcgatgacaatatgtgttgaatgtcgtttggatttagtaat------------ 12695  T
Q  197 tggtaaccaaccttaaattggttgtacactacatgacaacatctatatttctgttgtagtacattatgtacgcaatgacaataattgttatgctatcttt 296  Q
          ||||||||||||||||||||||||||||| ||||||||| ||||||| || ||||||||||||| | ||||||||| ||||||||| |||||||    
T  12696 ------ccaaccttaaattggttgtacactacatggcaacatctacatttctgctgcagtacattatgtatgtaatgacaatgattgttatgttatcttt 12789  T
Q  297 tatgccatatcttagaccatgcatcacaaatattcggattatgtgaccttcgttc 351  Q
    ||||||||  |||||| |||||||||||||||||||||||||| |||||||||||    
T  12790 tatgccatgccttagatcatgcatcacaaatattcggattatgcgaccttcgttc 12844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 400 - 444
Target Start/End: Original strand, 12951 - 12995
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactag 444  Q
    |||| |||||||||||||||||| ||||||| |||||||||||||    
T  12951 aaaattacgtaattcaacccgtgcgaagcacaggtttgtaactag 12995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 121; Significance: 1e-61; HSPs: 38)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 33098170 - 33097948
Alignment:
Q  1 ctacaagaggacgacaagctgttactcgatttaggtgttcctcctaca--gttgtttgtggagttggtccttagaaatgatcttgcttgaagaaaagttc 98  Q
    ||||||||||  ||||||||| || ||||||| | |||||||||||||  ||||||||| ||| |||| | ||||||| |||||||||||||||||||||    
T  33098170 ctacaagagggtgacaagctgctattcgatttggatgttcctcctacaatgttgtttgttgaggtggttcgtagaaataatcttgcttgaagaaaagttc 33098071  T
Q  99 taaacttttggaaattgtacgctggcatgtatattttgtataatatttcgatgacaat--gttttgaatgtggtttggatttagtaatccaacccttttt 196  Q
    ||| ||||||||| ||||| | ||||||||||||||||||||||||||| ||||||||  ||||| ||||||||||||||||||||||||||||| ||||    
T  33098070 taatcttttggaagttgtaagatggcatgtatattttgtataatatttcaatgacaatacgttttaaatgtggtttggatttagtaatccaacccatttt 33097971  T
Q  197 tggtaaccaaccttaaattggtt 219  Q
    || ||| ||||||||||||||||    
T  33097970 tgctaatcaaccttaaattggtt 33097948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 207 - 357
Target Start/End: Complemental strand, 25350743 - 25350593
Alignment:
Q  207 ccttaaattggttgtacactacatgacaacatctatatttctgttgtagtacattatgtacgcaatgacaataattgttatgctatcttttatgccatat 306  Q
    |||||||||||||||||||||||||||| ||||||||||| || ||||||||||||| || | ||| ||||| ||||||||| ||| ||||||| |||      
T  25350743 ccttaaattggttgtacactacatgacatcatctatatttatgctgtagtacattatctatgtaataacaatgattgttatgttattttttatgtcatgc 25350644  T
Q  307 cttagaccatgcatcacaaatattcggattatgtgaccttcgttcacaaat 357  Q
    ||||||||||||||||||||||||||||||||| | ||||||||| |||||    
T  25350643 cttagaccatgcatcacaaatattcggattatgcgtccttcgttctcaaat 25350593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 207 - 357
Target Start/End: Complemental strand, 25356437 - 25356287
Alignment:
Q  207 ccttaaattggttgtacactacatgacaacatctatatttctgttgtagtacattatgtacgcaatgacaataattgttatgctatcttttatgccatat 306  Q
    |||||||||||||||||||||||||||| ||||||||||| || ||||||||||||| || | ||| ||||| ||||||||| ||| ||||||| |||      
T  25356437 ccttaaattggttgtacactacatgacatcatctatatttatgctgtagtacattatctatgtaataacaatgattgttatgttattttttatgtcatgc 25356338  T
Q  307 cttagaccatgcatcacaaatattcggattatgtgaccttcgttcacaaat 357  Q
    ||||||||||||||||||||||||||||||||| | ||||||||| |||||    
T  25356337 cttagaccatgcatcacaaatattcggattatgcgtccttcgttctcaaat 25356287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 96 - 155
Target Start/End: Original strand, 42921787 - 42921846
Alignment:
Q  96 ttctaaacttttggaaattgtacgctggcatgtatattttgtataatatttcgatgacaa 155  Q
    |||||| |||||||||||||||  |||||||||||||||||||||||||||| |||||||    
T  42921787 ttctaatcttttggaaattgtattctggcatgtatattttgtataatatttcaatgacaa 42921846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 400 - 449
Target Start/End: Original strand, 691285 - 691334
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtttgg 449  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  691285 aaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagtttgg 691334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 400 - 448
Target Start/End: Complemental strand, 21669277 - 21669229
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtttg 448  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||||    
T  21669277 aaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagtttg 21669229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 400 - 447
Target Start/End: Original strand, 39278234 - 39278281
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||    
T  39278234 aaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagttt 39278281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 400 - 446
Target Start/End: Complemental strand, 31896859 - 31896813
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 446  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||    
T  31896859 aaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagtt 31896813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 400 - 446
Target Start/End: Complemental strand, 39648027 - 39647981
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 446  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||    
T  39648027 aaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagtt 39647981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 111
Target Start/End: Complemental strand, 25350313 - 25350211
Alignment:
Q  10 gacgacaagctgttactcgatttaggtgttcctcctaca--gttgtttgtggagttggtccttagaaatgatcttgcttgaagaaaagttctaaactttt 107  Q
    |||||||||||| |  ||||||| |||||||||||| ||  ||||||||| ||| |||||| ||||||| |||||| || ||||||| |||||| |||||    
T  25350313 gacgacaagctgcttttcgatttgggtgttcctcctgcagtgttgtttgttgaggtggtccgtagaaataatcttg-tttaagaaaatttctaatctttt 25350215  T
Q  108 ggaa 111  Q
    ||||    
T  25350214 ggaa 25350211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 111
Target Start/End: Complemental strand, 25356007 - 25355905
Alignment:
Q  10 gacgacaagctgttactcgatttaggtgttcctcctaca--gttgtttgtggagttggtccttagaaatgatcttgcttgaagaaaagttctaaactttt 107  Q
    |||||||||||| |  ||||||| |||||||||||| ||  ||||||||| ||| |||||| ||||||| |||||| || ||||||| |||||| |||||    
T  25356007 gacgacaagctgcttttcgatttgggtgttcctcctgcagtgttgtttgttgaggtggtccgtagaaataatcttg-tttaagaaaatttctaatctttt 25355909  T
Q  108 ggaa 111  Q
    ||||    
T  25355908 ggaa 25355905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 400 - 443
Target Start/End: Original strand, 9151415 - 9151458
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaacta 443  Q
    |||||||||| |||||||||||| ||||||||||||||||||||    
T  9151415 aaaaatacgttattcaacccgtgcgaagcacgggtttgtaacta 9151458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 404 - 446
Target Start/End: Original strand, 12960607 - 12960649
Alignment:
Q  404 atacgtaattcaacccgtgggaagcacgggtttgtaactagtt 446  Q
    |||||| |||||||||||| |||||||||||||||||||||||    
T  12960607 atacgttattcaacccgtgcgaagcacgggtttgtaactagtt 12960649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 401 - 447
Target Start/End: Original strand, 17817716 - 17817762
Alignment:
Q  401 aaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    |||| |||| |||||||||||| ||||||||||||||||||||||||    
T  17817716 aaaacacgttattcaacccgtgcgaagcacgggtttgtaactagttt 17817762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 400 - 446
Target Start/End: Complemental strand, 24682323 - 24682277
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 446  Q
    |||||||||| ||||||||||||  ||||||||||||||||||||||    
T  24682323 aaaaatacgttattcaacccgtgcaaagcacgggtttgtaactagtt 24682277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 400 - 446
Target Start/End: Complemental strand, 27732998 - 27732952
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 446  Q
    |||||||||| |||||||| ||| |||||||||||||||||||||||    
T  27732998 aaaaatacgttattcaaccagtgcgaagcacgggtttgtaactagtt 27732952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 400 - 445
Target Start/End: Original strand, 4850449 - 4850494
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagt 445  Q
    ||||||| || |||||||||||| ||||||||||||||||||||||    
T  4850449 aaaaatatgttattcaacccgtgtgaagcacgggtttgtaactagt 4850494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 400 - 445
Target Start/End: Original strand, 17172890 - 17172935
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagt 445  Q
    |||||||||| |||||| ||||| ||||||||||||||||||||||    
T  17172890 aaaaatacgttattcaatccgtgcgaagcacgggtttgtaactagt 17172935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 49 - 130
Target Start/End: Complemental strand, 25350400 - 25350319
Alignment:
Q  49 gttgtttgtggagttggtccttagaaatgatcttgcttgaagaaaagttctaaacttttggaaattgtacgctggcatgtat 130  Q
    ||||||| | ||| |||| | ||||||| |||||||||||||||||||||||| | ||||| | ||||| | ||||||||||    
T  25350400 gttgtttattgaggtggttcgtagaaataatcttgcttgaagaaaagttctaatcctttggcagttgtatgttggcatgtat 25350319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 49 - 130
Target Start/End: Complemental strand, 25356094 - 25356013
Alignment:
Q  49 gttgtttgtggagttggtccttagaaatgatcttgcttgaagaaaagttctaaacttttggaaattgtacgctggcatgtat 130  Q
    ||||||| | ||| |||| | ||||||| |||||||||||||||||||||||| | ||||| | ||||| | ||||||||||    
T  25356094 gttgtttattgaggtggttcgtagaaataatcttgcttgaagaaaagttctaatcctttggcagttgtatgttggcatgtat 25356013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 400 - 445
Target Start/End: Original strand, 44806574 - 44806619
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagt 445  Q
    ||||||||||||||||||| ||| ||||||||| ||||||||||||    
T  44806574 aaaaatacgtaattcaaccagtgcgaagcacggatttgtaactagt 44806619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 408 - 448
Target Start/End: Complemental strand, 272628 - 272588
Alignment:
Q  408 gtaattcaacccgtgggaagcacgggtttgtaactagtttg 448  Q
    ||||||||||||||| ||||||||| |||||||||||||||    
T  272628 gtaattcaacccgtgcgaagcacggatttgtaactagtttg 272588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 411 - 447
Target Start/End: Complemental strand, 9226055 - 9226019
Alignment:
Q  411 attcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    |||||||||||| ||||||||||||||||||||||||    
T  9226055 attcaacccgtgcgaagcacgggtttgtaactagttt 9226019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 412 - 448
Target Start/End: Original strand, 49023321 - 49023357
Alignment:
Q  412 ttcaacccgtgggaagcacgggtttgtaactagtttg 448  Q
    ||||||||||| |||||||||||||||||||||||||    
T  49023321 ttcaacccgtgcgaagcacgggtttgtaactagtttg 49023357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 443
Target Start/End: Original strand, 25731126 - 25731169
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaacta 443  Q
    |||||||||||||| |||||||| |||||||| |||||||||||    
T  25731126 aaaaatacgtaatttaacccgtgcgaagcacgagtttgtaacta 25731169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 446
Target Start/End: Complemental strand, 38434312 - 38434277
Alignment:
Q  411 attcaacccgtgggaagcacgggtttgtaactagtt 446  Q
    |||||||||||| |||||||||||||||||||||||    
T  38434312 attcaacccgtgcgaagcacgggtttgtaactagtt 38434277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 400 - 445
Target Start/End: Complemental strand, 7855011 - 7854965
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaag-cacgggtttgtaactagt 445  Q
    |||||||||| |||||||||||| |||| ||||||||||||||||||    
T  7855011 aaaaatacgttattcaacccgtgcgaagccacgggtttgtaactagt 7854965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 411 - 445
Target Start/End: Original strand, 15595432 - 15595466
Alignment:
Q  411 attcaacccgtgggaagcacgggtttgtaactagt 445  Q
    |||||||||||| ||||||||||||||||||||||    
T  15595432 attcaacccgtgcgaagcacgggtttgtaactagt 15595466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 411 - 445
Target Start/End: Complemental strand, 23476621 - 23476587
Alignment:
Q  411 attcaacccgtgggaagcacgggtttgtaactagt 445  Q
    |||||||||||| ||||||||||||||||||||||    
T  23476621 attcaacccgtgtgaagcacgggtttgtaactagt 23476587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 404 - 446
Target Start/End: Original strand, 27840514 - 27840556
Alignment:
Q  404 atacgtaattcaacccgtgggaagcacgggtttgtaactagtt 446  Q
    |||||| ||||||||||||  ||||||||||||||||||||||    
T  27840514 atacgttattcaacccgtgcaaagcacgggtttgtaactagtt 27840556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 400 - 446
Target Start/End: Original strand, 29469214 - 29469260
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 446  Q
    |||||||||| ||||||||||||  |||||||||||| |||||||||    
T  29469214 aaaaatacgttattcaacccgtgcaaagcacgggtttataactagtt 29469260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 446
Target Start/End: Complemental strand, 19049285 - 19049240
Alignment:
Q  401 aaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 446  Q
    |||| |||| |||||||||||| |||| ||||||||||||||||||    
T  19049285 aaaacacgttattcaacccgtgcgaagtacgggtttgtaactagtt 19049240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 447
Target Start/End: Complemental strand, 47573372 - 47573331
Alignment:
Q  406 acgtaattcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    |||| ||| |||||||| ||||||||||||||||||||||||    
T  47573372 acgttattgaacccgtgcgaagcacgggtttgtaactagttt 47573331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 411 - 447
Target Start/End: Complemental strand, 11834991 - 11834955
Alignment:
Q  411 attcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    |||||||||||| |||||||||||||| |||||||||    
T  11834991 attcaacccgtgcgaagcacgggtttggaactagttt 11834955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 509 - 557
Target Start/End: Original strand, 12807766 - 12807814
Alignment:
Q  509 attttgcccttataggggtattttggtaaattagtaaatgttgcctttc 557  Q
    ||||||||||||   ||||||||||||||||||||||||  ||||||||    
T  12807766 attttgcccttaggagggtattttggtaaattagtaaatcatgcctttc 12807814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 411 - 447
Target Start/End: Complemental strand, 21597978 - 21597942
Alignment:
Q  411 attcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    |||||||||||| |||||||||||||| |||||||||    
T  21597978 attcaacccgtgcgaagcacgggtttggaactagttt 21597942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 411 - 447
Target Start/End: Original strand, 42996948 - 42996984
Alignment:
Q  411 attcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    |||||||| ||| ||||||||||||||||||||||||    
T  42996948 attcaacctgtgcgaagcacgggtttgtaactagttt 42996984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 400 - 447
Target Start/End: Complemental strand, 48527457 - 48527407
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaa---gcacgggtttgtaactagttt 447  Q
    |||||||||| |||||||||||| |||   |||||||||||||||||||||    
T  48527457 aaaaatacgttattcaacccgtgcgaattcgcacgggtttgtaactagttt 48527407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 6e-17; HSPs: 42)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 506 - 559
Target Start/End: Original strand, 35534411 - 35534464
Alignment:
Q  506 accattttgcccttataggggtattttggtaaattagtaaatgttgcctttccc 559  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  35534411 accattttgcctttataggggtattttggtaaattagtaaatgttgcatttccc 35534464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 400 - 445
Target Start/End: Original strand, 5483030 - 5483075
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagt 445  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||    
T  5483030 aaaaatacgtaattcaacccgtgcgaagcacgggtttgtaactagt 5483075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 400 - 447
Target Start/End: Complemental strand, 35707703 - 35707656
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||    
T  35707703 aaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagttt 35707656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 400 - 446
Target Start/End: Original strand, 2118187 - 2118233
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 446  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||    
T  2118187 aaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagtt 2118233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 400 - 445
Target Start/End: Complemental strand, 574222 - 574177
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagt 445  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||    
T  574222 aaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagt 574177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 400 - 445
Target Start/End: Original strand, 3759276 - 3759321
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagt 445  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||    
T  3759276 aaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagt 3759321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 400 - 445
Target Start/End: Complemental strand, 12680675 - 12680630
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagt 445  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||    
T  12680675 aaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagt 12680630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 400 - 445
Target Start/End: Complemental strand, 39713541 - 39713496
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagt 445  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||    
T  39713541 aaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagt 39713496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 403 - 446
Target Start/End: Original strand, 5759341 - 5759384
Alignment:
Q  403 aatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 446  Q
    ||||||| |||||||||||| |||||||||||||||||||||||    
T  5759341 aatacgttattcaacccgtgcgaagcacgggtttgtaactagtt 5759384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 400 - 447
Target Start/End: Complemental strand, 9887316 - 9887269
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    |||||||||| ||||||||||||  |||||||||||||||||||||||    
T  9887316 aaaaatacgttattcaacccgtgcaaagcacgggtttgtaactagttt 9887269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 408 - 447
Target Start/End: Complemental strand, 27892681 - 27892642
Alignment:
Q  408 gtaattcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  27892681 gtaattcaacccgtgcgaagcacgggtttgtaactagttt 27892642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 400 - 447
Target Start/End: Original strand, 29713820 - 29713867
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    |||||||||| ||||||||||||  |||||||||||||||||||||||    
T  29713820 aaaaatacgttattcaacccgtgcaaagcacgggtttgtaactagttt 29713867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 400 - 447
Target Start/End: Complemental strand, 39404637 - 39404590
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    ||||||| || |||||||||||| ||||||||||||||||||||||||    
T  39404637 aaaaatatgttattcaacccgtgcgaagcacgggtttgtaactagttt 39404590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 400 - 446
Target Start/End: Original strand, 8964830 - 8964876
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 446  Q
    |||||||||| ||||||||||||  ||||||||||||||||||||||    
T  8964830 aaaaatacgttattcaacccgtgcaaagcacgggtttgtaactagtt 8964876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 404 - 446
Target Start/End: Complemental strand, 15650527 - 15650485
Alignment:
Q  404 atacgtaattcaacccgtgggaagcacgggtttgtaactagtt 446  Q
    |||||| |||||||||||| |||||||||||||||||||||||    
T  15650527 atacgttattcaacccgtgcgaagcacgggtttgtaactagtt 15650485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 400 - 446
Target Start/End: Original strand, 16653191 - 16653237
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 446  Q
    |||||||||| ||||||||||||  ||||||||||||||||||||||    
T  16653191 aaaaatacgttattcaacccgtgcaaagcacgggtttgtaactagtt 16653237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 400 - 446
Target Start/End: Complemental strand, 30527633 - 30527587
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 446  Q
    |||||||||| |||||||||||  |||||||||||||||||||||||    
T  30527633 aaaaatacgttattcaacccgtacgaagcacgggtttgtaactagtt 30527587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 49 - 130
Target Start/End: Complemental strand, 1967729 - 1967648
Alignment:
Q  49 gttgtttgtggagttggtccttagaaatgatcttgcttgaagaaaagttctaaacttttggaaattgtacgctggcatgtat 130  Q
    ||||||||| ||| ||||   ||||||| ||||||||| |||||||||||||| |||||| || ||||| ||| ||||||||    
T  1967729 gttgtttgttgaggtggtttgtagaaataatcttgcttcaagaaaagttctaatcttttgaaagttgtatgctagcatgtat 1967648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 404 - 445
Target Start/End: Complemental strand, 43014632 - 43014591
Alignment:
Q  404 atacgtaattcaacccgtgggaagcacgggtttgtaactagt 445  Q
    |||||| |||||||||||| ||||||||||||||||||||||    
T  43014632 atacgttattcaacccgtgcgaagcacgggtttgtaactagt 43014591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 403 - 447
Target Start/End: Original strand, 2777221 - 2777265
Alignment:
Q  403 aatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    ||||||| ||| |||||||| ||||||||||||||||||||||||    
T  2777221 aatacgttattgaacccgtgcgaagcacgggtttgtaactagttt 2777265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 403 - 447
Target Start/End: Complemental strand, 22115396 - 22115352
Alignment:
Q  403 aatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    ||||||| ||| || ||||||||||||||||||||||||||||||    
T  22115396 aatacgttattgaatccgtgggaagcacgggtttgtaactagttt 22115352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 403 - 447
Target Start/End: Complemental strand, 41983574 - 41983530
Alignment:
Q  403 aatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    ||||||| ||| |||||||| ||||||||||||||||||||||||    
T  41983574 aatacgttattgaacccgtgcgaagcacgggtttgtaactagttt 41983530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 509 - 556
Target Start/End: Complemental strand, 1975528 - 1975481
Alignment:
Q  509 attttgcccttataggggtattttggtaaattagtaaatgttgccttt 556  Q
    ||||||||||||| ||| ||||||||||||||||||| || |||||||    
T  1975528 attttgcccttatggggttattttggtaaattagtaattgctgccttt 1975481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 446
Target Start/End: Complemental strand, 5271644 - 5271601
Alignment:
Q  403 aatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 446  Q
    ||||||| ||| |||||||| |||||||||||||||||||||||    
T  5271644 aatacgttattgaacccgtgcgaagcacgggtttgtaactagtt 5271601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 445
Target Start/End: Original strand, 8532222 - 8532265
Alignment:
Q  402 aaatacgtaattcaacccgtgggaagcacgggtttgtaactagt 445  Q
    |||||||| |||||||||||| ||||||||| ||||||||||||    
T  8532222 aaatacgttattcaacccgtgcgaagcacggatttgtaactagt 8532265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 447
Target Start/End: Original strand, 19591081 - 19591124
Alignment:
Q  404 atacgtaattcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    |||||| ||| |||||||| ||||||||||||||||||||||||    
T  19591081 atacgttattaaacccgtgcgaagcacgggtttgtaactagttt 19591124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 446
Target Start/End: Original strand, 21353963 - 21354006
Alignment:
Q  403 aatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 446  Q
    ||||||| ||| |||||||| |||||||||||||||||||||||    
T  21353963 aatacgttattgaacccgtgcgaagcacgggtttgtaactagtt 21354006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 447
Target Start/End: Original strand, 37352097 - 37352144
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    |||||||||| |||||||| |||  |||||||||||||||||||||||    
T  37352097 aaaaatacgttattcaacctgtgcaaagcacgggtttgtaactagttt 37352144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 447
Target Start/End: Original strand, 37356996 - 37357043
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    |||||||||| |||||||| |||  |||||||||||||||||||||||    
T  37356996 aaaaatacgttattcaacctgtgcaaagcacgggtttgtaactagttt 37357043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 447
Target Start/End: Original strand, 51348063 - 51348110
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    |||||||| | |||||||||||| ||| ||||||||||||||||||||    
T  51348063 aaaaatacattattcaacccgtgcgaaacacgggtttgtaactagttt 51348110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 403 - 445
Target Start/End: Complemental strand, 14828845 - 14828803
Alignment:
Q  403 aatacgtaattcaacccgtgggaagcacgggtttgtaactagt 445  Q
    ||||||| ||| |||||||| ||||||||||||||||||||||    
T  14828845 aatacgttattgaacccgtgcgaagcacgggtttgtaactagt 14828803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 445
Target Start/End: Original strand, 1975398 - 1975435
Alignment:
Q  408 gtaattcaacccgtgggaagcacgggtttgtaactagt 445  Q
    ||||||||||||||| |||||| |||||||||||||||    
T  1975398 gtaattcaacccgtgcgaagcatgggtttgtaactagt 1975435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 445
Target Start/End: Complemental strand, 3839136 - 3839095
Alignment:
Q  404 atacgtaattcaacccgtgggaagcacgggtttgtaactagt 445  Q
    |||||| ||||||||| || ||||||||||||||||||||||    
T  3839136 atacgttattcaacccttgcgaagcacgggtttgtaactagt 3839095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 447
Target Start/End: Original strand, 15521071 - 15521112
Alignment:
Q  406 acgtaattcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    |||| ||| |||||||| ||||||||||||||||||||||||    
T  15521071 acgttattgaacccgtgcgaagcacgggtttgtaactagttt 15521112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 445
Target Start/End: Original strand, 16895950 - 16895991
Alignment:
Q  404 atacgtaattcaacccgtgggaagcacgggtttgtaactagt 445  Q
    |||||| |||||||||||| |||||| |||||||||||||||    
T  16895950 atacgttattcaacccgtgcgaagcatgggtttgtaactagt 16895991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 447
Target Start/End: Original strand, 28974008 - 28974053
Alignment:
Q  402 aaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    ||||| || ||| |||||||| ||||||||||||||||||||||||    
T  28974008 aaatatgttattgaacccgtgcgaagcacgggtttgtaactagttt 28974053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 446
Target Start/End: Complemental strand, 36741845 - 36741797
Alignment:
Q  400 aaaaatacgtaattcaacccgtggga--agcacgggtttgtaactagtt 446  Q
    ||||||||||||||||||||||| ||   ||||||||||||||||||||    
T  36741845 aaaaatacgtaattcaacccgtgcgagtcgcacgggtttgtaactagtt 36741797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 445
Target Start/End: Original strand, 56541766 - 56541807
Alignment:
Q  404 atacgtaattcaacccgtgggaagcacgggtttgtaactagt 445  Q
    |||||| |||||||||||| ||||||| ||||||||||||||    
T  56541766 atacgttattcaacccgtgcgaagcacaggtttgtaactagt 56541807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 14 - 107
Target Start/End: Complemental strand, 1967638 - 1967543
Alignment:
Q  14 acaagctgttactcgatttaggtgttcctcctaca--gttgtttgtggagttggtccttagaaatgatcttgcttgaagaaaagttctaaactttt 107  Q
    |||||||| || | ||||| |||||||||||||||  ||||||||| ||  |||| | | ||||| ||||||||| ||||||| |||||| |||||    
T  1967638 acaagctgctatttgatttgggtgttcctcctacagtgttgtttgttgacgtggttcgttgaaataatcttgctttaagaaaatttctaatctttt 1967543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 403 - 447
Target Start/End: Original strand, 23479823 - 23479867
Alignment:
Q  403 aatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    ||||||| ||| ||| |||| ||||||||||||||||||||||||    
T  23479823 aatacgttattgaactcgtgcgaagcacgggtttgtaactagttt 23479867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 400 - 436
Target Start/End: Original strand, 24549419 - 24549455
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggttt 436  Q
    |||||||||| |||||||||||| |||||||||||||    
T  24549419 aaaaatacgttattcaacccgtgcgaagcacgggttt 24549455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 403 - 447
Target Start/End: Original strand, 38009207 - 38009251
Alignment:
Q  403 aatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    ||||||| ||| |||||||| |||||||| |||||||||||||||    
T  38009207 aatacgttattgaacccgtgtgaagcacgtgtttgtaactagttt 38009251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 400 - 447
Target Start/End: Original strand, 29693384 - 29693431
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  29693384 aaaaatacgtaattcaacccgtgcgaagcacgggtttgtaactagttt 29693431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 96 - 155
Target Start/End: Complemental strand, 47388968 - 47388909
Alignment:
Q  96 ttctaaacttttggaaattgtacgctggcatgtatattttgtataatatttcgatgacaa 155  Q
    |||||| |||||||||||||||  |||||||||||||||||||||||||||| |||||||    
T  47388968 ttctaatcttttggaaattgtattctggcatgtatattttgtataatatttcaatgacaa 47388909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 400 - 447
Target Start/End: Original strand, 4893964 - 4894011
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||    
T  4893964 aaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagttt 4894011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 400 - 447
Target Start/End: Original strand, 10763584 - 10763631
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||    
T  10763584 aaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagttt 10763631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 400 - 447
Target Start/End: Original strand, 42682588 - 42682635
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||    
T  42682588 aaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagttt 42682635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 400 - 446
Target Start/End: Complemental strand, 29840735 - 29840689
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 446  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||    
T  29840735 aaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagtt 29840689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 400 - 446
Target Start/End: Original strand, 38896811 - 38896857
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 446  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||    
T  38896811 aaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagtt 38896857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 400 - 446
Target Start/End: Complemental strand, 52037436 - 52037390
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 446  Q
    |||||||| |||||||||||||| |||||||||||||||||||||||    
T  52037436 aaaaatacataattcaacccgtgcgaagcacgggtttgtaactagtt 52037390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 400 - 447
Target Start/End: Original strand, 1375978 - 1376025
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    |||||||||| ||||||||||||  |||||||||||||||||||||||    
T  1375978 aaaaatacgttattcaacccgtgcaaagcacgggtttgtaactagttt 1376025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 404 - 447
Target Start/End: Complemental strand, 3929789 - 3929746
Alignment:
Q  404 atacgtaattcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    |||||| |||||||||||| ||||||||||||||||||||||||    
T  3929789 atacgttattcaacccgtgcgaagcacgggtttgtaactagttt 3929746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 400 - 447
Target Start/End: Complemental strand, 19320466 - 19320419
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    |||||||||| ||||||||||||  |||||||||||||||||||||||    
T  19320466 aaaaatacgttattcaacccgtgcaaagcacgggtttgtaactagttt 19320419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 400 - 447
Target Start/End: Complemental strand, 22194513 - 22194466
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    |||||||||| ||||||||||||  |||||||||||||||||||||||    
T  22194513 aaaaatacgttattcaacccgtgcaaagcacgggtttgtaactagttt 22194466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 404 - 447
Target Start/End: Complemental strand, 28565471 - 28565428
Alignment:
Q  404 atacgtaattcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    |||||| |||||||||||| ||||||||||||||||||||||||    
T  28565471 atacgttattcaacccgtgcgaagcacgggtttgtaactagttt 28565428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 400 - 447
Target Start/End: Complemental strand, 29184523 - 29184476
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    |||||||||| |||||| ||||| ||||||||||||||||||||||||    
T  29184523 aaaaatacgttattcaatccgtgcgaagcacgggtttgtaactagttt 29184476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 408 - 447
Target Start/End: Complemental strand, 48183213 - 48183174
Alignment:
Q  408 gtaattcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  48183213 gtaattcaacccgtgcgaagcacgggtttgtaactagttt 48183174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 400 - 446
Target Start/End: Complemental strand, 24289246 - 24289200
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 446  Q
    |||||||||| ||||||||||||  ||||||||||||||||||||||    
T  24289246 aaaaatacgttattcaacccgtgcaaagcacgggtttgtaactagtt 24289200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 400 - 446
Target Start/End: Original strand, 28573156 - 28573202
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 446  Q
    |||||||||| ||||||||||||  ||||||||||||||||||||||    
T  28573156 aaaaatacgttattcaacccgtgcaaagcacgggtttgtaactagtt 28573202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 400 - 446
Target Start/End: Complemental strand, 33074277 - 33074231
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 446  Q
    |||||||||| ||||||||||||  ||||||||||||||||||||||    
T  33074277 aaaaatacgttattcaacccgtgcaaagcacgggtttgtaactagtt 33074231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 400 - 445
Target Start/End: Original strand, 33363568 - 33363613
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagt 445  Q
    |||||||||| |||||| ||||| ||||||||||||||||||||||    
T  33363568 aaaaatacgttattcaatccgtgcgaagcacgggtttgtaactagt 33363613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 405 - 446
Target Start/End: Original strand, 47137860 - 47137901
Alignment:
Q  405 tacgtaattcaacccgtgggaagcacgggtttgtaactagtt 446  Q
    ||||| |||||||||||| |||||||||||||||||||||||    
T  47137860 tacgttattcaacccgtgcgaagcacgggtttgtaactagtt 47137901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 411 - 447
Target Start/End: Original strand, 28631818 - 28631854
Alignment:
Q  411 attcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    |||||||||||| ||||||||||||||||||||||||    
T  28631818 attcaacccgtgcgaagcacgggtttgtaactagttt 28631854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 412 - 447
Target Start/End: Complemental strand, 23909749 - 23909714
Alignment:
Q  412 ttcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    ||||||||||| ||||||||||||||||||||||||    
T  23909749 ttcaacccgtgcgaagcacgggtttgtaactagttt 23909714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 445
Target Start/End: Original strand, 24294867 - 24294910
Alignment:
Q  402 aaatacgtaattcaacccgtgggaagcacgggtttgtaactagt 445  Q
    |||||||| ||| |||||||| ||||||||||||||||||||||    
T  24294867 aaatacgttattgaacccgtgcgaagcacgggtttgtaactagt 24294910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 446
Target Start/End: Original strand, 44407293 - 44407336
Alignment:
Q  403 aatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 446  Q
    ||||||| ||| |||||||| |||||||||||||||||||||||    
T  44407293 aatacgttattgaacccgtgcgaagcacgggtttgtaactagtt 44407336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 404 - 446
Target Start/End: Original strand, 20767556 - 20767598
Alignment:
Q  404 atacgtaattcaacccgtgggaagcacgggtttgtaactagtt 446  Q
    |||||| |||||| ||||| |||||||||||||||||||||||    
T  20767556 atacgttattcaagccgtgcgaagcacgggtttgtaactagtt 20767598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 403 - 445
Target Start/End: Original strand, 31620598 - 31620640
Alignment:
Q  403 aatacgtaattcaacccgtgggaagcacgggtttgtaactagt 445  Q
    ||||||| ||| |||||||| ||||||||||||||||||||||    
T  31620598 aatacgttattgaacccgtgcgaagcacgggtttgtaactagt 31620640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 400 - 446
Target Start/End: Complemental strand, 46623422 - 46623376
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 446  Q
    |||||||||| ||||||| |||| |||||||||| ||||||||||||    
T  46623422 aaaaatacgttattcaactcgtgcgaagcacgggattgtaactagtt 46623376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 448
Target Start/End: Complemental strand, 13662153 - 13662116
Alignment:
Q  411 attcaacccgtgggaagcacgggtttgtaactagtttg 448  Q
    |||||||||||| |||||||||||||||||||| ||||    
T  13662153 attcaacccgtgcgaagcacgggtttgtaactaatttg 13662116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 415 - 447
Target Start/End: Original strand, 45005717 - 45005749
Alignment:
Q  415 aacccgtgggaagcacgggtttgtaactagttt 447  Q
    |||||||| ||||||||||||||||||||||||    
T  45005717 aacccgtgcgaagcacgggtttgtaactagttt 45005749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 406 - 446
Target Start/End: Complemental strand, 50395006 - 50394966
Alignment:
Q  406 acgtaattcaacccgtgggaagcacgggtttgtaactagtt 446  Q
    |||| ||| |||||||| |||||||||||||||||||||||    
T  50395006 acgttattgaacccgtgcgaagcacgggtttgtaactagtt 50394966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 509 - 559
Target Start/End: Complemental strand, 44198203 - 44198153
Alignment:
Q  509 attttgcccttataggggtattttggtaaattagtaaatgttgcctttccc 559  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  44198203 attttgcccttatagaggtattttggtaaattagtaaatgctgcctttccc 44198153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 400 - 448
Target Start/End: Original strand, 41053800 - 41053848
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtttg 448  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  41053800 aaaaatatgtaattcaacccgtgcgaagcacgggtttgtaactagtttg 41053848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 400 - 447
Target Start/End: Original strand, 8396762 - 8396809
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||    
T  8396762 aaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagttt 8396809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 400 - 447
Target Start/End: Original strand, 22477902 - 22477949
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||    
T  22477902 aaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagttt 22477949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 400 - 446
Target Start/End: Complemental strand, 4137445 - 4137399
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 446  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||    
T  4137445 aaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagtt 4137399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 400 - 446
Target Start/End: Original strand, 35860998 - 35861044
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 446  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||    
T  35860998 aaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagtt 35861044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 403 - 446
Target Start/End: Original strand, 18688673 - 18688716
Alignment:
Q  403 aatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 446  Q
    ||||||| |||||||||||| |||||||||||||||||||||||    
T  18688673 aatacgttattcaacccgtgcgaagcacgggtttgtaactagtt 18688716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 400 - 447
Target Start/End: Complemental strand, 26776479 - 26776432
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    ||||||| || |||||||||||| ||||||||||||||||||||||||    
T  26776479 aaaaatatgttattcaacccgtgcgaagcacgggtttgtaactagttt 26776432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 400 - 443
Target Start/End: Complemental strand, 42614282 - 42614239
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaacta 443  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||    
T  42614282 aaaaatatgtaattcaacccgtgcgaagcacgggtttgtaacta 42614239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 401 - 447
Target Start/End: Original strand, 5240985 - 5241031
Alignment:
Q  401 aaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    |||| |||| |||||||||||| ||||||||||||||||||||||||    
T  5240985 aaaacacgttattcaacccgtgcgaagcacgggtttgtaactagttt 5241031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 400 - 446
Target Start/End: Complemental strand, 11951036 - 11950990
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 446  Q
    |||||||||| |||||||||||| |||||| ||||||||||||||||    
T  11951036 aaaaatacgttattcaacccgtgcgaagcatgggtttgtaactagtt 11950990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 400 - 446
Target Start/End: Complemental strand, 26100823 - 26100777
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 446  Q
    |||||||| | |||||||||||| |||||||||||||||||||||||    
T  26100823 aaaaatacattattcaacccgtgcgaagcacgggtttgtaactagtt 26100777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 404 - 445
Target Start/End: Original strand, 188736 - 188777
Alignment:
Q  404 atacgtaattcaacccgtgggaagcacgggtttgtaactagt 445  Q
    |||||| |||||||||||| ||||||||||||||||||||||    
T  188736 atacgttattcaacccgtgcgaagcacgggtttgtaactagt 188777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 402 - 447
Target Start/End: Original strand, 50742294 - 50742339
Alignment:
Q  402 aaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    |||||||| ||| |||||||| ||||||||||||||||||||||||    
T  50742294 aaatacgttattgaacccgtgcgaagcacgggtttgtaactagttt 50742339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 399 - 439
Target Start/End: Complemental strand, 12001473 - 12001433
Alignment:
Q  399 gaaaaatacgtaattcaacccgtgggaagcacgggtttgta 439  Q
    ||||||||||| |||||||||||| ||||||||||||||||    
T  12001473 gaaaaatacgttattcaacccgtgcgaagcacgggtttgta 12001433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 446
Target Start/End: Complemental strand, 21165965 - 21165930
Alignment:
Q  411 attcaacccgtgggaagcacgggtttgtaactagtt 446  Q
    |||||||||||| |||||||||||||||||||||||    
T  21165965 attcaacccgtgcgaagcacgggtttgtaactagtt 21165930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 411 - 445
Target Start/End: Original strand, 22522278 - 22522312
Alignment:
Q  411 attcaacccgtgggaagcacgggtttgtaactagt 445  Q
    |||||||||||| ||||||||||||||||||||||    
T  22522278 attcaacccgtgcgaagcacgggtttgtaactagt 22522312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 412 - 446
Target Start/End: Complemental strand, 22759090 - 22759056
Alignment:
Q  412 ttcaacccgtgggaagcacgggtttgtaactagtt 446  Q
    ||||||||||| |||||||||||||||||||||||    
T  22759090 ttcaacccgtgcgaagcacgggtttgtaactagtt 22759056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 400 - 446
Target Start/End: Complemental strand, 24560157 - 24560111
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 446  Q
    |||||||||| ||||||||||||  || |||||||||||||||||||    
T  24560157 aaaaatacgttattcaacccgtgtaaaacacgggtttgtaactagtt 24560111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 403 - 445
Target Start/End: Original strand, 39576533 - 39576575
Alignment:
Q  403 aatacgtaattcaacccgtgggaagcacgggtttgtaactagt 445  Q
    ||||||| ||||||| |||| ||||||||||||||||||||||    
T  39576533 aatacgttattcaactcgtgcgaagcacgggtttgtaactagt 39576575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 400 - 446
Target Start/End: Complemental strand, 55290442 - 55290396
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 446  Q
    |||||||||| |||||||||||  ||||||| |||||||||||||||    
T  55290442 aaaaatacgttattcaacccgtacgaagcacaggtttgtaactagtt 55290396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 448
Target Start/End: Original strand, 16496384 - 16496421
Alignment:
Q  411 attcaacccgtgggaagcacgggtttgtaactagtttg 448  Q
    |||||||||||| |||||||||||||||||||| ||||    
T  16496384 attcaacccgtgcgaagcacgggtttgtaactaatttg 16496421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 445
Target Start/End: Original strand, 30766506 - 30766547
Alignment:
Q  404 atacgtaattcaacccgtgggaagcacgggtttgtaactagt 445  Q
    |||||| |||||||||||| ||||||| ||||||||||||||    
T  30766506 atacgttattcaacccgtgcgaagcacaggtttgtaactagt 30766547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 445
Target Start/End: Original strand, 52843181 - 52843226
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagt 445  Q
    |||||||| | ||||||| |||| ||||||||||||||||||||||    
T  52843181 aaaaatacattattcaactcgtgcgaagcacgggtttgtaactagt 52843226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 448
Target Start/End: Complemental strand, 52852786 - 52852741
Alignment:
Q  403 aatacgtaattcaacccgtgggaagcacgggtttgtaactagtttg 448  Q
    ||||||| ||| |||||||| |||||||| ||||||||||||||||    
T  52852786 aatacgttattgaacccgtgcgaagcacgagtttgtaactagtttg 52852741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 404 - 447
Target Start/End: Complemental strand, 15315315 - 15315271
Alignment:
Q  404 atacgtaattcaacccgtgggaa-gcacgggtttgtaactagttt 447  Q
    |||||| |||||||||||| ||| |||||||||||||||||||||    
T  15315315 atacgttattcaacccgtgcgaaagcacgggtttgtaactagttt 15315271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 411 - 447
Target Start/End: Complemental strand, 19893214 - 19893178
Alignment:
Q  411 attcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    |||||||||||  ||||||||||||||||||||||||    
T  19893214 attcaacccgtatgaagcacgggtttgtaactagttt 19893178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 402 - 446
Target Start/End: Complemental strand, 52462258 - 52462214
Alignment:
Q  402 aaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 446  Q
    |||||||| ||| |||||||| ||||||||| |||||||||||||    
T  52462258 aaatacgttattgaacccgtgcgaagcacggatttgtaactagtt 52462214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 415 - 447
Target Start/End: Original strand, 54934745 - 54934777
Alignment:
Q  415 aacccgtgggaagcacgggtttgtaactagttt 447  Q
    |||||||| ||||||||||||||||||||||||    
T  54934745 aacccgtgcgaagcacgggtttgtaactagttt 54934777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 400 - 445
Target Start/End: Complemental strand, 45003707 - 45003662
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagt 445  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||    
T  45003707 aaaaatacgtaattcaacccgtgcgaagcacgggtttgtaactagt 45003662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 404 - 447
Target Start/End: Complemental strand, 30922139 - 30922096
Alignment:
Q  404 atacgtaattcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  30922139 atacgtaattcaacccgtgtgaagcacgggtttgtaactagttt 30922096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 400 - 447
Target Start/End: Original strand, 42782670 - 42782717
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||    
T  42782670 aaaaatacgttattcaacccgtgtgaagcacgggtttgtaactagttt 42782717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 400 - 446
Target Start/End: Complemental strand, 4289073 - 4289027
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 446  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||    
T  4289073 aaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagtt 4289027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 404 - 448
Target Start/End: Original strand, 7364780 - 7364824
Alignment:
Q  404 atacgtaattcaacccgtgggaagcacgggtttgtaactagtttg 448  Q
    |||||| |||||||||||| |||||||||||||||||||||||||    
T  7364780 atacgttattcaacccgtgcgaagcacgggtttgtaactagtttg 7364824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 400 - 447
Target Start/End: Complemental strand, 15084343 - 15084296
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    ||||||| ||||||||||||||| |||||||| |||||||||||||||    
T  15084343 aaaaatatgtaattcaacccgtgcgaagcacgagtttgtaactagttt 15084296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 400 - 447
Target Start/End: Original strand, 28609949 - 28609996
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    |||||||||| ||||||||||||  |||||||||||||||||||||||    
T  28609949 aaaaatacgttattcaacccgtgcaaagcacgggtttgtaactagttt 28609996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 400 - 446
Target Start/End: Complemental strand, 9542675 - 9542629
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 446  Q
    ||||||| || |||||||||||| |||||||||||||||||||||||    
T  9542675 aaaaatatgttattcaacccgtgcgaagcacgggtttgtaactagtt 9542629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 400 - 445
Target Start/End: Complemental strand, 9916752 - 9916707
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagt 445  Q
    |||||||||| |||||||| ||| ||||||||||||||||||||||    
T  9916752 aaaaatacgttattcaacctgtgcgaagcacgggtttgtaactagt 9916707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 400 - 445
Target Start/End: Complemental strand, 25123474 - 25123429
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagt 445  Q
    |||||||||||||||| |||||| |||||||||||||||| |||||    
T  25123474 aaaaatacgtaattcagcccgtgcgaagcacgggtttgtagctagt 25123429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 408 - 445
Target Start/End: Complemental strand, 25124081 - 25124044
Alignment:
Q  408 gtaattcaacccgtgggaagcacgggtttgtaactagt 445  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  25124081 gtaattcaacccgtgcgaagcacgggtttgtaactagt 25124044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 403 - 448
Target Start/End: Original strand, 26828459 - 26828504
Alignment:
Q  403 aatacgtaattcaacccgtgggaagcacgggtttgtaactagtttg 448  Q
    ||||||| ||| |||||||| |||||||||||||||||||||||||    
T  26828459 aatacgttattgaacccgtgcgaagcacgggtttgtaactagtttg 26828504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 400 - 445
Target Start/End: Original strand, 44800651 - 44800696
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagt 445  Q
    |||||||||||||||||| |||| |||||||| |||||||||||||    
T  44800651 aaaaatacgtaattcaactcgtgcgaagcacgagtttgtaactagt 44800696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 403 - 447
Target Start/End: Original strand, 33908191 - 33908235
Alignment:
Q  403 aatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    ||||||| ||| |||||||| ||||||||||||||||||||||||    
T  33908191 aatacgttattgaacccgtgcgaagcacgggtttgtaactagttt 33908235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 412 - 447
Target Start/End: Complemental strand, 1691460 - 1691425
Alignment:
Q  412 ttcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    ||||||||||| ||||||||||||||||||||||||    
T  1691460 ttcaacccgtgcgaagcacgggtttgtaactagttt 1691425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 446
Target Start/End: Original strand, 5253294 - 5253337
Alignment:
Q  403 aatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 446  Q
    ||||||| ||| |||||||| |||||||||||||||||||||||    
T  5253294 aatacgttattgaacccgtgcgaagcacgggtttgtaactagtt 5253337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 443
Target Start/End: Original strand, 19488272 - 19488315
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaacta 443  Q
    |||||||||| |||||||||||| ||| ||||||||||||||||    
T  19488272 aaaaatacgttattcaacccgtgcgaaacacgggtttgtaacta 19488315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 403 - 445
Target Start/End: Original strand, 11707573 - 11707615
Alignment:
Q  403 aatacgtaattcaacccgtgggaagcacgggtttgtaactagt 445  Q
    ||||||| ||| |||||||| ||||||||||||||||||||||    
T  11707573 aatacgttattgaacccgtgcgaagcacgggtttgtaactagt 11707615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 400 - 446
Target Start/End: Complemental strand, 19484662 - 19484616
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 446  Q
    ||||||| || |||||||||||| |||||||||||||| ||||||||    
T  19484662 aaaaatatgttattcaacccgtgcgaagcacgggtttgcaactagtt 19484616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 402 - 444
Target Start/End: Complemental strand, 25573960 - 25573918
Alignment:
Q  402 aaatacgtaattcaacccgtgggaagcacgggtttgtaactag 444  Q
    ||||||||||||  ||||||| |||||||||||||||||||||    
T  25573960 aaatacgtaatttcacccgtgcgaagcacgggtttgtaactag 25573918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 447
Target Start/End: Complemental strand, 6342768 - 6342727
Alignment:
Q  406 acgtaattcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    |||| ||| |||||||| ||||||||||||||||||||||||    
T  6342768 acgttattaaacccgtgcgaagcacgggtttgtaactagttt 6342727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 400 - 448
Target Start/End: Complemental strand, 10874444 - 10874396
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtttg 448  Q
    ||||||| || ||||||| |||| |||||||||| ||||||||||||||    
T  10874444 aaaaatatgttattcaactcgtgcgaagcacgggattgtaactagtttg 10874396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 415 - 447
Target Start/End: Original strand, 37224026 - 37224058
Alignment:
Q  415 aacccgtgggaagcacgggtttgtaactagttt 447  Q
    |||||||| ||||||||||||||||||||||||    
T  37224026 aacccgtgcgaagcacgggtttgtaactagttt 37224058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 400 - 447
Target Start/End: Original strand, 14644 - 14691
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||    
T  14644 aaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagttt 14691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 400 - 446
Target Start/End: Complemental strand, 17446 - 17400
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 446  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||    
T  17446 aaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagtt 17400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 404 - 448
Target Start/End: Complemental strand, 24960 - 24916
Alignment:
Q  404 atacgtaattcaacccgtgggaagcacgggtttgtaactagtttg 448  Q
    |||||| |||||||||||| |||||||||||||||||||||||||    
T  24960 atacgttattcaacccgtgcgaagcacgggtttgtaactagtttg 24916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 400 - 448
Target Start/End: Original strand, 55556 - 55604
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtttg 448  Q
    |||||||||| ||||||| |||| |||||||||||||||||||||||||    
T  55556 aaaaatacgttattcaactcgtgcgaagcacgggtttgtaactagtttg 55604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 411 - 445
Target Start/End: Original strand, 61720 - 61754
Alignment:
Q  411 attcaacccgtgggaagcacgggtttgtaactagt 445  Q
    |||||||||||| ||||||||||||||||||||||    
T  61720 attcaacccgtgcgaagcacgggtttgtaactagt 61754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0484 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0484
Description:

Target: scaffold0484; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 400 - 447
Target Start/End: Complemental strand, 8221 - 8174
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    ||||||| || |||||||||||| ||||||||||||||||||||||||    
T  8221 aaaaatatgttattcaacccgtgcgaagcacgggtttgtaactagttt 8174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 400 - 447
Target Start/End: Original strand, 11228 - 11275
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    |||||||||| ||||||||||||  |||||||||||||||||||||||    
T  11228 aaaaatacgttattcaacccgtgcaaagcacgggtttgtaactagttt 11275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 404 - 447
Target Start/End: Original strand, 13023 - 13066
Alignment:
Q  404 atacgtaattcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    |||||| |||||||||||| ||||||||||||||||||||||||    
T  13023 atacgttattcaacccgtgcgaagcacgggtttgtaactagttt 13066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 509 - 557
Target Start/End: Original strand, 5189 - 5237
Alignment:
Q  509 attttgcccttataggggtattttggtaaattagtaaatgttgcctttc 557  Q
    |||||||||||| | ||||||||||||||||||||||||  ||||||||    
T  5189 attttgcccttagaagggtattttggtaaattagtaaatcatgcctttc 5237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 400 - 446
Target Start/End: Original strand, 139571 - 139617
Alignment:
Q  400 aaaaatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 446  Q
    ||||||||||||||||||||||| ||| |||| ||||||||||||||    
T  139571 aaaaatacgtaattcaacccgtgcgaaacacgagtttgtaactagtt 139617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 403 - 447
Target Start/End: Complemental strand, 2751 - 2707
Alignment:
Q  403 aatacgtaattcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    ||||||| ||| |||||||| ||||||||||||||||||||||||    
T  2751 aatacgttattgaacccgtgtgaagcacgggtttgtaactagttt 2707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 411 - 447
Target Start/End: Complemental strand, 52727 - 52691
Alignment:
Q  411 attcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    |||||||||||| ||||||||||||||||||||||||    
T  52727 attcaacccgtgcgaagcacgggtttgtaactagttt 52691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 446
Target Start/End: Complemental strand, 29681 - 29638
Alignment:
Q  403 aatacgtaattcaacccgtgggaagcacgggtttgtaactagtt 446  Q
    ||||||| ||| |||||||| |||||||||||||||||||||||    
T  29681 aatacgttattgaacccgtgcgaagcacgggtttgtaactagtt 29638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 403 - 445
Target Start/End: Complemental strand, 25656 - 25614
Alignment:
Q  403 aatacgtaattcaacccgtgggaagcacgggtttgtaactagt 445  Q
    ||||||| ||| |||||||| ||||||||||||||||||||||    
T  25656 aatacgttattgaacccgtgcgaagcacgggtttgtaactagt 25614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 404 - 446
Target Start/End: Complemental strand, 143255 - 143213
Alignment:
Q  404 atacgtaattcaacccgtgggaagcacgggtttgtaactagtt 446  Q
    |||||| |||||||| ||| |||||||||||||||||||||||    
T  143255 atacgttattcaacctgtgcgaagcacgggtttgtaactagtt 143213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 403 - 445
Target Start/End: Original strand, 10864 - 10906
Alignment:
Q  403 aatacgtaattcaacccgtgggaagcacgggtttgtaactagt 445  Q
    ||||||| ||| |||||||| ||||||||||||||||||||||    
T  10864 aatacgttattgaacccgtgcgaagcacgggtttgtaactagt 10906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 448
Target Start/End: Complemental strand, 151915 - 151878
Alignment:
Q  411 attcaacccgtgggaagcacgggtttgtaactagtttg 448  Q
    |||||||||||| |||||||||||||||||||| ||||    
T  151915 attcaacccgtgcgaagcacgggtttgtaactaatttg 151878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 411 - 447
Target Start/End: Complemental strand, 64437 - 64401
Alignment:
Q  411 attcaacccgtgggaagcacgggtttgtaactagttt 447  Q
    |||||||||||| ||||||||||||| ||||||||||    
T  64437 attcaacccgtgcgaagcacgggtttataactagttt 64401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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