View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21255_low_30 (Length: 246)
Name: NF21255_low_30
Description: NF21255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21255_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 106 - 227
Target Start/End: Complemental strand, 24631594 - 24631473
Alignment:
| Q |
106 |
tagtgggttgtggaaaatgtgatagtggcaaacaaaagagggatttaatggttagttcaaaaggcgttttatattagatatcaattaatgaaagcaaaat |
205 |
Q |
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| T |
24631594 |
tagtgggttatggaaaatgtgatagtggcaaacaaaagaggaatttaatggttagttcaaaaggcgttttatattggatatcaattaatgaaagcaaaat |
24631495 |
T |
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| Q |
206 |
taaatcaagaatattgtcggtg |
227 |
Q |
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| T |
24631494 |
taaatcaagaatattgtcggtg |
24631473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 71 - 208
Target Start/End: Original strand, 8571990 - 8572128
Alignment:
| Q |
71 |
tgtgtgggttgtgctagtagaaattaatagggggttagtgggttgtggaaaatgtgatagtggcaaacaaaagagggatttaatggttagttcaaaa-gg |
169 |
Q |
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| T |
8571990 |
tgtgtgggttgtgatagtagaaattaacaggtggttagtggattttggataatgtgatagtggaaaacgaaaaagggatttaatggtttgttaaaaaggg |
8572089 |
T |
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| Q |
170 |
cgttttatattagatatcaattaatgaaagcaaaattaa |
208 |
Q |
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| T |
8572090 |
caattgatattggatatcaattaatggaaacaaaattaa |
8572128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 201
Target Start/End: Original strand, 32137287 - 32137386
Alignment:
| Q |
103 |
ggttagtgggttgtggaaaatgtgatagtggcaaacaaaagagggatttaatggttagttcaaaa-ggcgttttatattagatatcaattaatgaaagca |
201 |
Q |
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| T |
32137287 |
ggttagtggattatggataatgtgatagtgggtaacaaaagagagatttactggtttgttaaaaagggtatttgatattggatatcaattaatggaagca |
32137386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 147 - 227
Target Start/End: Complemental strand, 37072959 - 37072878
Alignment:
| Q |
147 |
gatttaatggttagttcaaaagg-cgttttatattagatatcaattaatgaaagcaaaattaaatcaagaatattgtcggtg |
227 |
Q |
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| T |
37072959 |
gatttaatgatttgtttaaaagggcgattgatattggatatcaattaatggaagcaaaattaaatcaagaaaattgtcggtg |
37072878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 87 - 154
Target Start/End: Complemental strand, 1068772 - 1068705
Alignment:
| Q |
87 |
gtagaaattaatagggggttagtgggttgtggaaaatgtgatagtggcaaacaaaagagggatttaat |
154 |
Q |
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| T |
1068772 |
gtagaaattaataggtggttagtgggttatggataatgtgatagtgggaaacgaaaaagagatttaat |
1068705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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