View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21255_low_34 (Length: 243)
Name: NF21255_low_34
Description: NF21255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21255_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 5 - 216
Target Start/End: Original strand, 31792099 - 31792300
Alignment:
| Q |
5 |
caatattattatagaaaaagaagatccttagatttataccttttgaacaatgaacatctggataaactattaaagcccaatatgcaaaatagttctataa |
104 |
Q |
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| T |
31792099 |
caatattattatagaaaaagaagatccctagatttatatcttttgaacaatgaacgtcagtataaactattaaagcccaatatgcaaaacagttctataa |
31792198 |
T |
|
| Q |
105 |
ttgggcctcccaacaaagtctagatgtgcggttctcaaaatttaactaagtaaactacggatcccttactgttttatagaatatcgcactcctctcgatt |
204 |
Q |
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| T |
31792199 |
ttgggcctcccaacaaagtctagat-tgcggttctcaaaatttaactaagtaaactacggat---------ttttatagaatatcgcactcctctcgatt |
31792288 |
T |
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| Q |
205 |
tgtcaatccaga |
216 |
Q |
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|||||||||||| |
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| T |
31792289 |
tgtcaatccaga |
31792300 |
T |
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