View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21255_low_39 (Length: 236)
Name: NF21255_low_39
Description: NF21255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21255_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 1e-92; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 23903868 - 23904043
Alignment:
| Q |
1 |
agagacctttttatgatccacttagcttacaaatcacagaaaaatcattccatgatgctctttcccctaatggcacaaccagcaccagttgcaatagtaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
23903868 |
agagacctttttatgatccacttagcttacaaatcacagaaaaatcattccatgatgctctttcacctaatggcacaaccagcaccagttgcaatagtaa |
23903967 |
T |
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| Q |
101 |
tagtaacagcagcatcgacgattctcacgagtcgaaacccttttcacctgatactcctgtttctgatcttgttaat |
176 |
Q |
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| T |
23903968 |
tagtaacagcagcatcgacgattctcacgagtcgaaacccttttcacctgatactcctgtttctgatcttgttaat |
23904043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 23923116 - 23922941
Alignment:
| Q |
1 |
agagacctttttatgatccacttagcttacaaatcacagaaaaatcattccatgatgctctttcccctaatggcacaaccagcaccagttgcaatagtaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
23923116 |
agagacctttttatgatccacttagcttacaaatcacagaaaaatcattccatgatgctctttcacctaatggcacaaccagcaccagttgcaatagtaa |
23923017 |
T |
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| Q |
101 |
tagtaacagcagcatcgacgattctcacgagtcgaaacccttttcacctgatactcctgtttctgatcttgttaat |
176 |
Q |
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| T |
23923016 |
tagtaacagcagcatcgacgattctcacgagtcgaaacccttttcacctgatactcctgtttctgatcttgttaat |
23922941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 23913245 - 23913183
Alignment:
| Q |
1 |
agagacctttttatgatccacttagcttacaaatcacagaaaaatcattccatgatgctcttt |
63 |
Q |
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||||||| |||||||| ||||||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
23913245 |
agagaccgttttatgacccacttagcttacaaatgacagaaaaatcattctatgatgctcttt |
23913183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 99 - 176
Target Start/End: Complemental strand, 23913102 - 23913025
Alignment:
| Q |
99 |
aatagtaacagcagcatcgacgattctcacgagtcgaaacccttttcacctgatactcctgtttctgatcttgttaat |
176 |
Q |
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||||| || |||||| |||||||||||| ||||| |||||| ||||||||||||||||||||||||||| ||||||| |
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| T |
23913102 |
aatagcaatagcagcgtcgacgattctcgagagtcaaaacccctttcacctgatactcctgtttctgatcatgttaat |
23913025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 217
Target Start/End: Original strand, 23904057 - 23904102
Alignment:
| Q |
172 |
ttaattcctgtgcttcaagtagtgttagtgatggactcgtaaattt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
23904057 |
ttaattcctgtgcttcaagtagtgttagtgatggacccataaattt |
23904102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 217
Target Start/End: Complemental strand, 23922927 - 23922882
Alignment:
| Q |
172 |
ttaattcctgtgcttcaagtagtgttagtgatggactcgtaaattt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
23922927 |
ttaattcctgtgcttcaagtagtgttagtgatggacccataaattt |
23922882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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