View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21255_low_5 (Length: 543)
Name: NF21255_low_5
Description: NF21255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21255_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 18 - 463
Target Start/End: Original strand, 37970813 - 37971258
Alignment:
| Q |
18 |
tgattgaatagcatatttccgaattgttgatgagaaatgaaccaagcgagtgagtgagatgagtgagacagaagaagtttggctcatctgaaaaccaaat |
117 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37970813 |
tgattgaatagcatatttcagaattgttgatgagaaatgaaccaagcgagtgagtgagatgagtgagacagaagaagtttggctcatctgaaaaccaaat |
37970912 |
T |
|
| Q |
118 |
ggtggcatgtgttatcacaagggtaaggacaatcaatgtccttaactgcggctcggtcaaaataccagtctccaacagccagagcaattgcctacatatt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37970913 |
ggtggcatgtgttatcacaagggtaaggacaatcaatgtccttaactgcggctcggtcaaaataccagtctccaacagccagagcaattgcctacatatt |
37971012 |
T |
|
| Q |
218 |
gtcaatgcataagggttagatatgacatataaacaataagatcttaaatcttaaaaagagcagtatgggtagatttcaaagactaacgatagaaactaaa |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
37971013 |
gtcaatgcataagggttagatatgacatataaacaataagatcttaaatcttaaaaagagcagtatgagtagatttcaaagactaacgatagaaactaaa |
37971112 |
T |
|
| Q |
318 |
gagcaacagaaatagcagtgtcatgaaaaataatggaatcatcaccgctgcataacactatgttatattatggctaataaacaaagaaagcataaacaat |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37971113 |
gagcaacagaaatagcagtgtcatgaaaaataatggaatcatcaccgctgcataacactatgttatattatggctaataaacaaagaaagcataaacaat |
37971212 |
T |
|
| Q |
418 |
ttcctagaattctccatgtgaatattttatggcaaaaacaggtgta |
463 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37971213 |
ttcctagaattctccatgtgaatattttatggcaaaaacaggtgta |
37971258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 95 - 224
Target Start/End: Complemental strand, 45669189 - 45669060
Alignment:
| Q |
95 |
tttggctcatctgaaaaccaaatggtggcatgtgttatcacaagggtaaggacaatcaatgtccttaactgcggctcggtcaaaataccagtctccaaca |
194 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||| | |||| ||||||||||||||||||||| |
|
|
| T |
45669189 |
tttggctcaactgaaaaccaaatggtgacatgtattatcacaagggtaaggacaatcaatgaccttaacaccttctcgatcaaaataccagtctccaaca |
45669090 |
T |
|
| Q |
195 |
gccagagcaattgcctacatattgtcaatg |
224 |
Q |
| |
|
|| | ||||||| ||||||| | ||||||| |
|
|
| T |
45669089 |
gctaaagcaattacctacatttagtcaatg |
45669060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University