View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21255_low_6 (Length: 500)
Name: NF21255_low_6
Description: NF21255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21255_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 405; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 18 - 426
Target Start/End: Complemental strand, 37572527 - 37572119
Alignment:
| Q |
18 |
aaagaagacaaaaactaagcgagaaaacacgctgtcttcagaaactaatgccatgggacaagagaatggatcaagctactctttatgaagaagcttacaa |
117 |
Q |
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| T |
37572527 |
aaagaagacaaaaactaagcgagaaaacacgctgtcttcagaaactaatgccatgggacaagagaatggatcaagctactctttatgaagaagcttacaa |
37572428 |
T |
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| Q |
118 |
atatgttaagtttttgcaggcacagttatctgttcttcaatcaatgccttcttacggtgtcggctacggcggtggtggaactactgcttctggtggtgtt |
217 |
Q |
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| T |
37572427 |
atacgttaagtttttgcaggcacagttatctgttcttcaatcaatgccttcttacggtgtcggctacggcggtggtggaactactgcttctggtggtgtt |
37572328 |
T |
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| Q |
218 |
tttgatgacttggagaagctgaaaagaaaccaagctttgcagattctggtgaactcaccggttgcacaaacaaagctttgtgaacgaggttactgtgttt |
317 |
Q |
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| T |
37572327 |
tttgatgacttggagaagctgaaaagaaaccaagctttgcagattctggtgaactcaccggttgcacaaacaaagctttgtgaacgaggttactgtgttt |
37572228 |
T |
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| Q |
318 |
tctccatggaacaattctctctgctgaagaaattatcagaaaaaagacaacaacaagagaatttttctgaacatggttcttcaaaaactttctttcactg |
417 |
Q |
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| T |
37572227 |
tctccatggaacaattctctctgctgaagaaattatcagaaaaaagacaacaacaagagaatttttctgaacatggttcttcaaaaactttctttcactg |
37572128 |
T |
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| Q |
418 |
attgattac |
426 |
Q |
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| T |
37572127 |
attgattac |
37572119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 485
Target Start/End: Complemental strand, 37572093 - 37572060
Alignment:
| Q |
452 |
gacaccgtttctcgtgttcgttcaagtttaaccc |
485 |
Q |
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| T |
37572093 |
gacaccgtttcttgtgttcgttcaagtttaaccc |
37572060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 210 - 373
Target Start/End: Original strand, 37221120 - 37221283
Alignment:
| Q |
210 |
gtggtgtttttgatgacttggagaagctgaaaagaaaccaagctttgcagattctggtgaactcaccggttgcacaaacaaagctttgtgaacgaggtta |
309 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||| || |||||| ||||||||||||| |||||| |||||||||||||||||| | |||| |
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| T |
37221120 |
gtggtgtttttgatgacttggagaagctgaacagaaaccaagcattacagattttggtgaactcaccagttgcaaaaacaaagctttgtgaacaatgtta |
37221219 |
T |
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| Q |
310 |
ctgtgttttctccatggaacaattctctctgctgaagaaattatcagaaaaaagacaacaacaa |
373 |
Q |
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||||||||||||||||||||||||||| |||| | ||||||||| | ||||||||||||||| |
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| T |
37221220 |
ttgtgttttctccatggaacaattctctttgctcagaaaattatcatagaaaagacaacaacaa |
37221283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 37221037 - 37221093
Alignment:
| Q |
18 |
aaagaagacaaaaactaagcgagaaaacacgctgtcttcagaaactaatgccatggg |
74 |
Q |
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||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
37221037 |
aaagaagacaaaatctaagcgagaaaacatgttgtcttcagaaactaatgccatggg |
37221093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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