View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21255_low_8 (Length: 464)
Name: NF21255_low_8
Description: NF21255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21255_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 59 - 445
Target Start/End: Original strand, 43231490 - 43231850
Alignment:
| Q |
59 |
ccaaatgcttcaaatgaaaagccaaacaaacataccttgaacaatacacgagtatttaaagaatcaacaacccgacagaaacaaccagccaacacatcga |
158 |
Q |
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| T |
43231490 |
ccaaatgcttcaaatcaaaagccaaacaaacataccttgaacaatacacgagtatttaaagaatcaacaacacgacagaaacaaccagccaacgcatcga |
43231589 |
T |
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| Q |
159 |
ttcagcaaattaaacaaacaaaatcgaatttattaagatgtcaatgtaaaggatgaagagttaagcatgggaatcaagtaaatacatgcatcaacccaag |
258 |
Q |
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| T |
43231590 |
ttcagc-----aaacaaacaaaatcgaatttattaagatgtcaatgtaaaggatgaagagttaagcgtgggaatcaagtaaatatatg---------agg |
43231675 |
T |
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| Q |
259 |
aggtaatggatttggtcaaggaaaaagaaaaaggagaggaggagaataaagtgtggcaacagtgctataattagc-nnnnnnngttctattctagtggaa |
357 |
Q |
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| T |
43231676 |
aggtaatggatttggtc-------------aaggagaggaggagaataaagtgtggcaacagtgctataattagcaaaaaaaagttctattctagtggaa |
43231762 |
T |
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| Q |
358 |
attatcaggttgacgaaccagtaagatccatttgttgggcattaatgaaataacttttggttttatttatcatttcccaagtgtgtat |
445 |
Q |
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| T |
43231763 |
attatcaggttgacgagccagtaagatccatttgttgggcattaatgaaataacttttggttttatttatcatttcccaagtgtgtat |
43231850 |
T |
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