View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21256_high_2 (Length: 642)

Name: NF21256_high_2
Description: NF21256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21256_high_2
NF21256_high_2
[»] chr2 (2 HSPs)
chr2 (18-624)||(44423634-44424230)
chr2 (10-54)||(27001707-27001751)
[»] chr1 (1 HSPs)
chr1 (26-59)||(10587493-10587526)
[»] chr7 (2 HSPs)
chr7 (10-53)||(37264459-37264502)
chr7 (10-52)||(6591463-6591505)
[»] chr5 (1 HSPs)
chr5 (10-53)||(15898625-15898668)
[»] chr3 (1 HSPs)
chr3 (10-53)||(30261420-30261463)
[»] chr8 (2 HSPs)
chr8 (10-54)||(15020914-15020958)
chr8 (10-54)||(43844672-43844716)
[»] chr6 (2 HSPs)
chr6 (10-54)||(29444187-29444231)
chr6 (10-54)||(34703749-34703793)
[»] chr4 (1 HSPs)
chr4 (10-54)||(41594763-41594807)


Alignment Details
Target: chr2 (Bit Score: 521; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 18 - 624
Target Start/End: Complemental strand, 44424230 - 44423634
Alignment:
Q  18 aacaaaagactcacttaaaatgggacggagggagtatcaaaatagtctacccgagatttttgtaccaatttacccctattccctgaccacaaagataatg 117  Q
    ||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  44424230 aacaaaagattcgcttaaaatgggacggagggagtattaaaatagtctacccgagatttctgtaccaatttacccctattccatgaccacaaagataatg 44424131  T
Q  118 tgaaggttgatgc-taagtactacacatgaaattcaaattttagcatgctatgagttgaagttatctaactaaccattaaaatgaaataataactactta 216  Q
    ||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44424130 tgaaggttgatgcctaagtactacacatgaa-ttcaaatcttagcatgctatgagttgaagttatctaactaaccattaaaatgaaataataactactta 44424032  T
Q  217 tttcatcaatcatctgtgtcaaatttgaatgccaaaaaatttaaacaacaaaaagttcaacaatcaagttcttctagtttttacctataagatttgtagt 316  Q
    ||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44424031 tttc----------tgtgtcaaatttgaatgccaaaaaatttaaacaacaaaaagttcaacaatcaagttcttctagtttttacctataagatttgtagt 44423942  T
Q  317 agtaaaatgttattatgccaggtaaagtaaaacatgttcgagaagaaaaacgacccaaaggaataatggttggtaaagctttgtattatgtcaaaaattc 416  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44423941 agtaaaatgttattatgctaggtaaagtaaaacatgttcgagaagaaaaacgacccaaaggaataatggttggtaaagctttgtattatgtcaaaaattc 44423842  T
Q  417 cctccatctatatgaactatccttataattccatttagaaaagaaaatgacaattaattccttttcattattggtaagatagagatgcgagtgagacttt 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  44423841 cctccatctatatgaactatccttataattccatttagaaaagaaaatgacaattaattccttttcattattggtaagatagagatgtgagtgagacttt 44423742  T
Q  517 gaatctattctattctgatgctgatttcttaaattagattttataactttagtatggtaatggttgcgtgccattttaagggctcatagaaaggacaaag 616  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44423741 gaatctattctattctgatgctgatttcttaaattagattttattactttagtatggtaatggttgcgtgccattttaagggctcatagaaaggacaaag 44423642  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 27001707 - 27001751
Alignment:
Q  10 gtgagatgaacaaaagactcacttaaaatgggacggagggagtat 54  Q
    |||| ||||||||||  |||||||||| |||||||||||||||||    
T  27001707 gtgaaatgaacaaaatgctcacttaaattgggacggagggagtat 27001751  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 26 - 59
Target Start/End: Complemental strand, 10587526 - 10587493
Alignment:
Q  26 actcacttaaaatgggacggagggagtatcaaaa 59  Q
    ||||||||||||||||||||||||||||||||||    
T  10587526 actcacttaaaatgggacggagggagtatcaaaa 10587493  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 37264459 - 37264502
Alignment:
Q  10 gtgagatgaacaaaagactcacttaaaatgggacggagggagta 53  Q
    |||| |||| |||||| |||||||||||||||||||||||||||    
T  37264459 gtgaaatgagcaaaaggctcacttaaaatgggacggagggagta 37264502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 6591505 - 6591463
Alignment:
Q  10 gtgagatgaacaaaagactcacttaaaatgggacggagggagt 52  Q
    |||| |||||||| ||||||||||||||||||||| |||||||    
T  6591505 gtgaaatgaacaatagactcacttaaaatgggacgaagggagt 6591463  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 15898625 - 15898668
Alignment:
Q  10 gtgagatgaacaaaagactcacttaaaatgggacggagggagta 53  Q
    |||| |||||| ||||||||| ||||||||||||||||||||||    
T  15898625 gtgaaatgaactaaagactcatttaaaatgggacggagggagta 15898668  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 30261463 - 30261420
Alignment:
Q  10 gtgagatgaacaaaagactcacttaaaatgggacggagggagta 53  Q
    |||| ||||||||||| |||| ||||||||||||||||||||||    
T  30261463 gtgaaatgaacaaaaggctcagttaaaatgggacggagggagta 30261420  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 15020914 - 15020958
Alignment:
Q  10 gtgagatgaacaaaagactcacttaaaatgggacggagggagtat 54  Q
    |||| |||||||| |  ||||||||||||||||||||||||||||    
T  15020914 gtgaaatgaacaatatgctcacttaaaatgggacggagggagtat 15020958  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 43844716 - 43844672
Alignment:
Q  10 gtgagatgaacaaaagactcacttaaaatgggacggagggagtat 54  Q
    |||| |||| ||||| ||||| |||||||||||||||||||||||    
T  43844716 gtgaaatgatcaaaaaactcaattaaaatgggacggagggagtat 43844672  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 29444187 - 29444231
Alignment:
Q  10 gtgagatgaacaaaagactcacttaaaatgggacggagggagtat 54  Q
    |||| |||||||||||||||| |||| |||| |||||||||||||    
T  29444187 gtgaaatgaacaaaagactcagttaatatggaacggagggagtat 29444231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 34703749 - 34703793
Alignment:
Q  10 gtgagatgaacaaaagactcacttaaaatgggacggagggagtat 54  Q
    |||| ||||||||||  |||||||||| |||||||||||||||||    
T  34703749 gtgaaatgaacaaaatgctcacttaaattgggacggagggagtat 34703793  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 41594807 - 41594763
Alignment:
Q  10 gtgagatgaacaaaagactcacttaaaatgggacggagggagtat 54  Q
    |||| ||||||||||| ||| |||| |||||||||||||||||||    
T  41594807 gtgaaatgaacaaaaggctcgcttataatgggacggagggagtat 41594763  T

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