View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21256_high_21 (Length: 258)
Name: NF21256_high_21
Description: NF21256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21256_high_21 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 13 - 258
Target Start/End: Original strand, 13953914 - 13954159
Alignment:
| Q |
13 |
cacagaacacaacatttctatttgagatagtgaagagagaaattaggagaatacttgccactttgatagccatgtagatatgcaaatgtcccttggtagc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13953914 |
cacagaacacaacatttctatttgagatagtgaagagagaaattaggagaatacttgccactttgatagccatgtagatatgcaaatgtcccttggtagc |
13954013 |
T |
|
| Q |
113 |
aagtagcaatccaatagcaactgattcaggccaatgaaagccaagaattacaccagaaacaactgttccagcaactttaccaaccattgctattatgata |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13954014 |
aagtagcaatccaatagcaactgattcaggccaatgaaagccaagaattacaccagaaacaactgttccagcaactttaccaaccattgctattatgata |
13954113 |
T |
|
| Q |
213 |
gatataaacaattttaaccatgtttctaaagctccaggatgaaaat |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13954114 |
gatataaacaattttaaccatgtttctaaagctccaggatgaaaat |
13954159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 70 - 151
Target Start/End: Complemental strand, 9865521 - 9865440
Alignment:
| Q |
70 |
ccactttgatagccatgtagatatgcaaatgtcccttggtagcaagtagcaatccaatagcaactgattcaggccaatgaaa |
151 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||||| |||| ||| |||||||| |||||| || |||||||||| |||| |
|
|
| T |
9865521 |
ccactttgatagccaagtagatatgcaaatgaccctttgtagtaagaagcaatcctatagcagttgcttcaggccaacgaaa |
9865440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University