View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21256_high_3 (Length: 639)
Name: NF21256_high_3
Description: NF21256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21256_high_3 |
 | |
|
| [»] scaffold0352 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0352 (Bit Score: 549; Significance: 0; HSPs: 1)
Name: scaffold0352
Description:
Target: scaffold0352; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 18 - 627
Target Start/End: Original strand, 13496 - 14109
Alignment:
| Q |
18 |
attagatcatattcaatttcatagttgaaaccaatcagtttgttatgagagtggctactatataatgatacacatgttgaacattatatcgagtggtgtt |
117 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
13496 |
attagattatattcaatttcatagttgaaaccaatcagtttgttataagagtggctactatataatgatacacatgttgaacattgtatcgagtggtgtt |
13595 |
T |
|
| Q |
118 |
gttgattcatggttgcaagtacgaaatcaaatttt-ataacaagttgtataaattaatgaattgtatatttttatgtttatatgataatctaatattatg |
216 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13596 |
gttgattcgtggttgcaagtacgaaatcaaatttttataacaagttgtataaattaatgaattgtatatttttatgtttatatgataatctaatattatg |
13695 |
T |
|
| Q |
217 |
tcaacatttgttt---cagatctatactgattcaaatatatttcataagaacggagttaaaattgtccaagatgcaaatataattttagaactcgttgaa |
313 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13696 |
tcaacatttgtttattcagatctatactgattcaaatatatttcataagaacggagttaaaattgtccaagatgcaaatataattttagaactcgttgaa |
13795 |
T |
|
| Q |
314 |
gcaggtgtagaaaatgctattgattgatgattttgtatgcaatgacaaatggttcaggtttaacactactcttatgtaatttggaatggacttagttgta |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13796 |
gcaggtgtagaaaatgctattgattgatgattttgtatgcaatgacaaatggttcaggtttaacactactcttatgtaatttggaatggacttagttgta |
13895 |
T |
|
| Q |
414 |
ggacttgatttttggagcaggtgtagattcaacttaatgttttcccaaatttaagtcnnnnnnnnngttgaagttctcttatcatatatgttttacctat |
513 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
13896 |
ggacttgatttttggagcaggtgtagattcaacttaatgttttcccaaatttaagtctttttttttgttgaagttctcttatcatatatgttttacctat |
13995 |
T |
|
| Q |
514 |
ttgcattttagtgtaacctctttccgtgctagtgtattggctatgttttaattggattggacctggttccccaatattgagcgattcattttagagtgta |
613 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13996 |
ttgcattttagtgtaacctctttccgtgctagtgtattggctatgttttaattggattggacctggttccccaatattgagcgattcattttagagtgta |
14095 |
T |
|
| Q |
614 |
agctgagtattatc |
627 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
14096 |
agctgagtattatc |
14109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 22 - 225
Target Start/End: Original strand, 23467774 - 23467979
Alignment:
| Q |
22 |
gatcatattcaatttcatagttgaaaccaatcagtttgttatgagagtggctactatataatgatacacatgttgaacattatatcgagtggtgttgttg |
121 |
Q |
| |
|
||||||||||||||||| ||| |||| ||||| |||||||| ||| | ||||||| | | ||| |||| |||||||| ||| |||| ||||||||| | |
|
|
| T |
23467774 |
gatcatattcaatttcaaagtcgaaagcaatcggtttgttacgagtgcggctactttttcatgctacatatgttgaaaattgtatccgatggtgttgtgg |
23467873 |
T |
|
| Q |
122 |
attcatggttgcaagtacgaaat--caaattttataacaagttgtataaattaatgaattgtatatttttatgtttatatgataatctaatattatgtca |
219 |
Q |
| |
|
|||||||| |||||||||| ||| | ||||| |||||| |||||||||||||| |||| ||| ||| | |||||||| |||| |||||| |||||| |
|
|
| T |
23467874 |
attcatggatgcaagtacgtaataggatattttttaacaacttgtataaattaattaattttatttttacaagtttatatcataaaataatatcatgtca |
23467973 |
T |
|
| Q |
220 |
acattt |
225 |
Q |
| |
|
|||||| |
|
|
| T |
23467974 |
acattt |
23467979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 7e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 22 - 225
Target Start/End: Complemental strand, 5705829 - 5705626
Alignment:
| Q |
22 |
gatcatattcaatttcatagttgaaaccaatcagtttgttatgagagtggctactatataatgatacacatgttgaacattatatcgagtggtgttgttg |
121 |
Q |
| |
|
||||||||||||||||| ||| ||| |||||||||| ||| ||||| || |||| | | ||| |||| ||||||||||| ||||| ||||||||||| | |
|
|
| T |
5705829 |
gatcatattcaatttcagagtcgaaggcaatcagtttcttacgagagcggatactttgtcatgctacatatgttgaacatcatatccagtggtgttgtgg |
5705730 |
T |
|
| Q |
122 |
attcatggttgcaagtacgaaatcaaattttataacaagttgtataaattaatgaattgtatatttttatgtttatatgataatctaatattatgtcaac |
221 |
Q |
| |
|
|||||||| |||||||| | | | |||| |||||| | ||||||||||| |||| ||| || ||| | ||||||||| |||||||||||||||| |
|
|
| T |
5705729 |
attcatggatgcaagtatgtataagatttttttaacaaatattataaattaattaattttattcttacatgctaatatgataaactaatattatgtcaac |
5705630 |
T |
|
| Q |
222 |
attt |
225 |
Q |
| |
|
|||| |
|
|
| T |
5705629 |
attt |
5705626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 7e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 22 - 225
Target Start/End: Complemental strand, 8353550 - 8353347
Alignment:
| Q |
22 |
gatcatattcaatttcatagttgaaaccaatcagtttgttatgagagtggctactatataatgatacacatgttgaacattatatcgagtggtgttgttg |
121 |
Q |
| |
|
|||||||||||||||| ||| || ||||| |||||||| ||||| || |||| ||||||| |||| |||||||||||| |||| ||||||||||| | |
|
|
| T |
8353550 |
gatcatattcaatttccgagtcaaaggcaatctgtttgttacgagagcggatactttataatgctacatatgttgaacattgtatccagtggtgttgtgg |
8353451 |
T |
|
| Q |
122 |
attcatggttgcaagtacgaaatcaaattttataacaagttgtataaattaatgaattgtatatttttatgtttatatgataatctaatattatgtcaac |
221 |
Q |
| |
|
|||||||| |||||||||| | | |||| |||||| | | | ||||||| |||| ||| ||| |||||| |||||||| |||||||||||||| | |
|
|
| T |
8353450 |
attcatggatgcaagtacgtataagatttttttaacaactattttcaattaattaattttatttttacatgtttgtatgataaactaatattatgtcatc |
8353351 |
T |
|
| Q |
222 |
attt |
225 |
Q |
| |
|
|||| |
|
|
| T |
8353350 |
attt |
8353347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 22 - 225
Target Start/End: Complemental strand, 16182458 - 16182255
Alignment:
| Q |
22 |
gatcatattcaatttcatagttgaaaccaatcagtttgttatgagagtggctactatataatgatacacatgttgaacattatatcgagtggtgttgttg |
121 |
Q |
| |
|
||||||||||||||||| ||| ||| |||||||||| ||| ||||| || |||| | | ||| |||| ||||||||||| ||||| ||||||||||| | |
|
|
| T |
16182458 |
gatcatattcaatttcagagtcgaaggcaatcagtttcttacgagagcggatactttgtcatgctacatatgttgaacatcatatccagtggtgttgtgg |
16182359 |
T |
|
| Q |
122 |
attcatggttgcaagtacgaaatcaaattttataacaagttgtataaattaatgaattgtatatttttatgtttatatgataatctaatattatgtcaac |
221 |
Q |
| |
|
|||||||| |||||||| | | | |||| |||||| | ||||||||||| |||| ||| || ||| | ||||||||| |||||||||||||| | |
|
|
| T |
16182358 |
attcatggatgcaagtatgtataagatttttttaacaaatattataaattaattaattttattcttacatgctaatatgataaactaatattatgtcatc |
16182259 |
T |
|
| Q |
222 |
attt |
225 |
Q |
| |
|
|||| |
|
|
| T |
16182258 |
attt |
16182255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 22 - 225
Target Start/End: Original strand, 2889591 - 2889794
Alignment:
| Q |
22 |
gatcatattcaatttcatagttgaaaccaatcagtttgttatgagagtggctactatataatgatacacatgttgaacattatatcgagtggtgttgttg |
121 |
Q |
| |
|
||||||||||||||||| ||| ||| |||||||||| ||| ||||| || |||| | | ||| |||| ||||||||||| ||||| ||||||||||| | |
|
|
| T |
2889591 |
gatcatattcaatttcagagtcgaaggcaatcagtttcttacgagagcggatactttgtcatgctacatatgttgaacatcatatccagtggtgttgtgg |
2889690 |
T |
|
| Q |
122 |
attcatggttgcaagtacgaaatcaaattttataacaagttgtataaattaatgaattgtatatttttatgtttatatgataatctaatattatgtcaac |
221 |
Q |
| |
|
|||||||| |||||||| | | | |||| |||||| | ||||||||||| |||| ||| || ||| | ||||||||| |||||||||||||| | |
|
|
| T |
2889691 |
attcatggatgcaagtatgtataagatttttttaacaaatattataaattaattaattttattcttacatgctaatatgataaactaatattatgtcatc |
2889790 |
T |
|
| Q |
222 |
attt |
225 |
Q |
| |
|
|||| |
|
|
| T |
2889791 |
attt |
2889794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 107
Target Start/End: Complemental strand, 20591716 - 20591669
Alignment:
| Q |
60 |
ttatgagagtggctactatataatgatacacatgttgaacattatatc |
107 |
Q |
| |
|
||||||| ||||||||| |||||||||| | ||||||||||||||||| |
|
|
| T |
20591716 |
ttatgagtgtggctactttataatgatatatatgttgaacattatatc |
20591669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 84 - 221
Target Start/End: Complemental strand, 20218426 - 20218286
Alignment:
| Q |
84 |
gatacacatgttgaacattatatcgagtggtgttgttgattcatggttgcaagtacgaaatcaaattttat---aacaagttgtataaattaatgaattg |
180 |
Q |
| |
|
|||||| |||||||||||| |||| |||||| ||||||||||||| ||||||| ||| |||||| | |||||||||||||| ||| | |||| |
|
|
| T |
20218426 |
gatacatatgttgaacattgtatctggtggtggtgttgattcatggatgcaagtgtctaatagaattttttttgaacaagttgtataagttacttaattt |
20218327 |
T |
|
| Q |
181 |
tatatttttatgtttatatgataatctaatattatgtcaac |
221 |
Q |
| |
|
||| |||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
20218326 |
tattttttcatgtttatataataatctaatattatgtcaac |
20218286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 22 - 229
Target Start/End: Complemental strand, 40290964 - 40290761
Alignment:
| Q |
22 |
gatcatattcaatttcatagttgaaaccaatcagtttgttatgagagtggctactatataatgatacacatgttgaacattatatcgagtggtgttgttg |
121 |
Q |
| |
|
||||||||||||||||| ||| ||| |||||||||||| | ||||| || || | | | ||| |||| |||||||||||| |||| |||||||||| |
|
|
| T |
40290964 |
gatcatattcaatttcagagtcgaaggcaatcagtttgtgacgagagaggatattttgtcatgctacatatgttgaacattgtatccggtggtgttgtct |
40290865 |
T |
|
| Q |
122 |
attcatggttgcaagtacgaaatcaaattttataacaagttgtataaattaatgaattgtatatttttatgtttatatgataatctaatattatgtcaac |
221 |
Q |
| |
|
|| || ||||||||| | | |||| |||||| | ||||||||||| |||| ||| ||| ||||||||||||||| ||||||||||| || | |
|
|
| T |
40290864 |
at----ggacgcaagtacgcataagatttttttaacaactattataaattaattaattttatttttacatgtttatatgataaactaatattatgccatc |
40290769 |
T |
|
| Q |
222 |
atttgttt |
229 |
Q |
| |
|
||| |||| |
|
|
| T |
40290768 |
attagttt |
40290761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 86 - 225
Target Start/End: Original strand, 3593785 - 3593924
Alignment:
| Q |
86 |
tacacatgttgaacattatatcgagtggtgttgttgattcatggttgcaagtacgaaatcaaattttataacaagttgtataaattaatgaattgtatat |
185 |
Q |
| |
|
|||| ||||||||||| ||||| ||||||||||| ||||||||| |||||||| | | | |||| |||||| | ||||||||||| |||| ||| |
|
|
| T |
3593785 |
tacatatgttgaacatcatatccagtggtgttgtggattcatggatgcaagtatgtataagatttttttaacaaatattataaattaattaattttattc |
3593884 |
T |
|
| Q |
186 |
ttttatgtttatatgataatctaatattatgtcaacattt |
225 |
Q |
| |
|
|| ||| | ||||||||| |||||||||||||| ||||| |
|
|
| T |
3593885 |
ttacatgctaatatgataaactaatattatgtcatcattt |
3593924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 60 - 102
Target Start/End: Complemental strand, 22818992 - 22818950
Alignment:
| Q |
60 |
ttatgagagtggctactatataatgatacacatgttgaacatt |
102 |
Q |
| |
|
||||||| ||||||||| |||||||||||| |||||||||||| |
|
|
| T |
22818992 |
ttatgagtgtggctactttataatgatacatatgttgaacatt |
22818950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 158 - 225
Target Start/End: Original strand, 7860645 - 7860712
Alignment:
| Q |
158 |
aagttgtataaattaatgaattgtatatttttatgtttatatgataatctaatattatgtcaacattt |
225 |
Q |
| |
|
|||||||||||||| || |||| ||| ||| |||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
7860645 |
aagttgtataaatttattaattttatttttgcatgtgtatatgataatctaatattatgtcatcattt |
7860712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 25 - 225
Target Start/End: Original strand, 17792247 - 17792447
Alignment:
| Q |
25 |
catattcaatttcatagttgaaaccaatcagtttgttatgagagtggctactatataatgatacacatgttgaacattatatcgagtggtgttgttgatt |
124 |
Q |
| |
|
|||||||||||| | ||| |||| ||||||||||||||| |||| |||||| | | ||| |||| ||||||||||| |||| || |||||| |||| |
|
|
| T |
17792247 |
catattcaattttagagtcgaaagcaatcagtttgttataagagcagctactttgtcatgctacatatgttgaacatcatatttggtactgttgtggatt |
17792346 |
T |
|
| Q |
125 |
catggttgcaagtacgaaatca-aattttataacaagttgtataaattaatgaattgtatatttttatgtttatatgataatctaatattatgtcaacat |
223 |
Q |
| |
|
|||| ||||||||| | || | | |||| | | || | |||||||||| | |||| ||| || ||||||||||||||| |||| ||||||||||||| |
|
|
| T |
17792347 |
aatggatgcaagtac-atataatatttttttgataactagtataaattacttaattttattttcacatgtttatatgataaactaacattatgtcaacat |
17792445 |
T |
|
| Q |
224 |
tt |
225 |
Q |
| |
|
|| |
|
|
| T |
17792446 |
tt |
17792447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 107
Target Start/End: Complemental strand, 9102683 - 9102636
Alignment:
| Q |
60 |
ttatgagagtggctactatataatgatacacatgttgaacattatatc |
107 |
Q |
| |
|
||||||| ||||||||| |||||||||||| |||||||||||| |||| |
|
|
| T |
9102683 |
ttatgagtgtggctactttataatgatacatatgttgaacattgtatc |
9102636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University