View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21256_high_6 (Length: 539)
Name: NF21256_high_6
Description: NF21256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21256_high_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 473; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 18 - 529
Target Start/End: Original strand, 33119232 - 33119747
Alignment:
| Q |
18 |
caaagttttgagtgaatcaactgaaaaggaaattaaggaagcagaattttcaaacaacataacaatagtacaaatgatgaaaaccaaagctgtaaggaga |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
33119232 |
caaagttttgagtgaatcaactgaaaaggaaattaaggaagcagaattttcaaacaacataacaatagtacaaatgatgaaaaccaaagctataaggaga |
33119331 |
T |
|
| Q |
118 |
ggtttatatgcaggaatgggacttgcaattttccaacaatttgttggaatcaacactgtcatgtacta-----cagtccagccattattcagttagccgg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
33119332 |
ggtttatatgcaggaatgggacttgcaattttccaacaatttgttggaatcaacactgtcatgtactatactacagtccagccattattcagttagccgg |
33119431 |
T |
|
| Q |
213 |
ttttgcatccaatcaaacggcacttcttctgtcactcataacatctggactaaatgcatttggttccattttaagcatgtacttgattgaaaaaagcggg |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
33119432 |
ttttgcatccaatcaaacggcacttcttctgtcactcataacatctggactaaatgcatttggttccattttaagcatgtaattgattgaaaaaagcgg- |
33119530 |
T |
|
| Q |
313 |
agaaagaaactcgctttaataagtttgacaggagttgtaggatcgctaattcttcttaccgttgtttttcatcagactgcgattacctcaccacttatta |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33119531 |
agaaagaaactcgctttaataagtttgacaggagttgtaggatcactaattcttcttaccgttgtttttcatcagactgcgattacctcaccacttatta |
33119630 |
T |
|
| Q |
413 |
gtccaacagaaactgctaacttcaattccacttgccctggttactctaaagctattgaccctgctaaatgggattgtatgacttgtcttaaagatgaatc |
512 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33119631 |
gtccaactgaaactgctaacttcaattccacttgccctggttactctaaagctattgaccctgctaaatgggattgtatgacttgtcttaaagatgaatc |
33119730 |
T |
|
| Q |
513 |
aaattgtggcttctgtg |
529 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
33119731 |
aaattgtggcttctgtg |
33119747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 115 - 339
Target Start/End: Original strand, 33116180 - 33116404
Alignment:
| Q |
115 |
agaggtttatatgcaggaatgggacttgcaattttccaacaatttgttggaatcaacactgtcatgtactacagtccagccattattcagttagccggtt |
214 |
Q |
| |
|
|||||||| |||||||||||||| ||| ||| |||||||||||||| |||||||| || || ||||||| ||| ||| | ||| |||| |||| |||| |
|
|
| T |
33116180 |
agaggtttgtatgcaggaatgggccttcaaatattccaacaatttgtaggaatcaataccgtaatgtacttcagcccaactattgttcaactagctggtt |
33116279 |
T |
|
| Q |
215 |
ttgcatccaatcaaacggcacttcttctgtcactcataacatctggactaaatgcatttggttccattttaagcatgtacttgattgaaaaaagcgggag |
314 |
Q |
| |
|
||||||| |||||||| ||| | |||||||| || || || |||| | ||||| |||||||| || ||||||| || || || || |||| |||||| |
|
|
| T |
33116280 |
ttgcatctaatcaaaccgcaatgcttctgtctcttatcactgctgggttgaatgcgtttggttctcttataagcatatatttcatcgataaaaccgggag |
33116379 |
T |
|
| Q |
315 |
aaagaaactcgctttaataagtttg |
339 |
Q |
| |
|
|||||| || ||||| || |||||| |
|
|
| T |
33116380 |
aaagaagctagctttgattagtttg |
33116404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 4e-36; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 95 - 296
Target Start/End: Complemental strand, 21559375 - 21559174
Alignment:
| Q |
95 |
tgaaaaccaaagctgtaaggagaggtttatatgcaggaatgggacttgcaattttccaacaatttgttggaatcaacactgtcatgtactacagtccagc |
194 |
Q |
| |
|
||||||||||| | || || |||||||||||||||||| ||||||| ||| |||||||||||||| ||||||||||| || ||||||||||||||| | |
|
|
| T |
21559375 |
tgaaaaccaaaacagttagaagaggtttatatgcaggagtgggactacaaatcttccaacaatttgtcggaatcaacacagtaatgtactacagtccaac |
21559276 |
T |
|
| Q |
195 |
cattattcagttagccggttttgcatccaatcaaacggcacttcttctgtcactcataacatctggactaaatgcatttggttccattttaagcatgtac |
294 |
Q |
| |
|
||| |||| |||| ||||||||||| || |||| |||||||||||||| ||| | ||| ||||| | |||||||||||||| ||||| ||||| ||| |
|
|
| T |
21559275 |
catcgttcaactagctggttttgcatcaaacaaaacagcacttcttctgtcgctcgtcacagctggaattaatgcatttggttcgattttgagcatatac |
21559176 |
T |
|
| Q |
295 |
tt |
296 |
Q |
| |
|
|| |
|
|
| T |
21559175 |
tt |
21559174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 115 - 350
Target Start/End: Complemental strand, 21492670 - 21492435
Alignment:
| Q |
115 |
agaggtttatatgcaggaatgggacttgcaattttccaacaatttgttggaatcaacactgtcatgtactacagtccagccattattcagttagccggtt |
214 |
Q |
| |
|
||||||||||||||||| | |||||||| ||||||| |||||| || |||||||| || |||||||||||||| | ||| ||||| | ||||||| |
|
|
| T |
21492670 |
agaggtttatatgcaggtgtaggacttgcgtttttccagcaatttaccggtatcaacacggtaatgtactacagtccttcaattgttcagctggccggtt |
21492571 |
T |
|
| Q |
215 |
ttgcatccaatcaaacggcacttcttctgtcactcataacatctggactaaatgcatttggttccattttaagcatgtacttgattgaaaaaagcgggag |
314 |
Q |
| |
|
|||| || || ||| |||||||||||||| || || || ||||| || |||||||| ||||| ||| | ||||| || || || || |||| ||||| |
|
|
| T |
21492570 |
ttgcgtcaaaaagaacagcacttcttctgtctctaatcacttctggcctcaatgcattcggttcaattctgagcatatatttcatcgacaaaactgggag |
21492471 |
T |
|
| Q |
315 |
aaagaaactcgctttaataagtttgacaggagttgt |
350 |
Q |
| |
|
|||||||| || || || |||||||| || ||||| |
|
|
| T |
21492470 |
gaagaaacttgcattgattagtttgaccggtgttgt |
21492435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 115 - 339
Target Start/End: Complemental strand, 1084232 - 1084008
Alignment:
| Q |
115 |
agaggtttatatgcaggaatgggacttgcaattttccaacaatttgttggaatcaacactgtcatgtactacagtccagccattattcagttagccggtt |
214 |
Q |
| |
|
|||||||| |||||||||||||| ||| ||| |||||||||||||| |||||||| | || ||||||| ||| ||| | ||| |||| |||| |||| |
|
|
| T |
1084232 |
agaggtttgtatgcaggaatgggccttcaaatattccaacaatttgtaggaatcaatatcgtaatgtacttcagcccaactattgttcaactagctggtt |
1084133 |
T |
|
| Q |
215 |
ttgcatccaatcaaacggcacttcttctgtcactcataacatctggactaaatgcatttggttccattttaagcatgtacttgattgaaaaaagcgggag |
314 |
Q |
| |
|
||||||| |||||||| ||| | |||||||| || || || |||| | ||| | |||||||| || ||||||| || || ||||| |||| |||||| |
|
|
| T |
1084132 |
ttgcatctaatcaaaccgcaatgcttctgtctcttatcactgctgggttgaatacgtttggttcgcttataagcatatatttcattgataaaaccgggag |
1084033 |
T |
|
| Q |
315 |
aaagaaactcgctttaataagtttg |
339 |
Q |
| |
|
|||||| || ||||| || |||||| |
|
|
| T |
1084032 |
aaagaagctagctttgattagtttg |
1084008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University