View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21256_low_1 (Length: 735)
Name: NF21256_low_1
Description: NF21256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21256_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 360 - 718
Target Start/End: Complemental strand, 47691479 - 47691127
Alignment:
| Q |
360 |
aaagaaagacaaaattcaatcaaatataaaagattttcacaatcacttttcattaattcttgcattattattgatctgtaaccgaggacttacttgttga |
459 |
Q |
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| T |
47691479 |
aaagaaagacaaaattcaatcaaatataaaagattttcacaatcacttc------attcttgcattattattgatctgtaaccgaggacttacttgttga |
47691386 |
T |
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| Q |
460 |
tccttgagtaaattgacttcctgatcctgaatcagttgactttgtgggacctgaatattgctcacttaatgatatagataatgcccttttgggttgcatt |
559 |
Q |
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| T |
47691385 |
tccttgagtaaattgacttcctgatcctgaatcagttgactttgtgggacctgaatattgctcacttaatgatatagataatgcccttttgggttgcatt |
47691286 |
T |
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| Q |
560 |
aaaaatggaggttctgatggttcaggaagttgaaaagatgtgctattaagcattaatagaacagaactcatagttggtctcacatctatatcttcttgaa |
659 |
Q |
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| T |
47691285 |
aaaaatggaggttccgaaggttcagggagtgggaaagtggtgctattaagcattaatagaacagaactcatagttggtctcacatctatatcttcttgaa |
47691186 |
T |
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| Q |
660 |
cacaaagtaatccaacatggatgcatctcattgtttcattcttgtttaaaccttgttct |
718 |
Q |
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| T |
47691185 |
cacaaagtaatccaacatggatgcatctcattgtttcattcttgtttaaaccttgttct |
47691127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 429 - 714
Target Start/End: Complemental strand, 47679757 - 47679472
Alignment:
| Q |
429 |
attgatctgtaaccgaggacttacttgttgatccttgagtaaattgacttcctgatcctgaatcagttgactttgtgggacctgaatattgctcacttaa |
528 |
Q |
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| T |
47679757 |
attgatctatacctgaagacttacttgttgatccttgagtaatttgacttcctgatcctgaatcacttgactttgtgggcacagaatattgttcatttaa |
47679658 |
T |
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| Q |
529 |
tgatatagataatgcccttttgggttgcattaaaaatggaggttctgatggttcaggaagttgaaaagatgtgctattaagcattaatagaacagaactc |
628 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||| || |||||||| ||| | |||| |||||||||||||||| || ||| |||||| |
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| T |
47679657 |
tggtatagataatgcccttttgggttgcattaaaaatggaggttccgaaggttcagggagtgggaaagtggtgctattaagcattagtaaaactgaactc |
47679558 |
T |
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| Q |
629 |
atagttggtctcacatctatatcttcttgaacacaaagtaatccaacatggatgcatctcattgtttcattcttgtttaaaccttg |
714 |
Q |
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| T |
47679557 |
atatttggtctcatagctatatcttcttgaacacaaagtaatccaacatggatgcatctcattttttcattcttattaaaaccttg |
47679472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 103 - 202
Target Start/End: Complemental strand, 47691805 - 47691707
Alignment:
| Q |
103 |
cacacacagtctaacgtgcttctttaaatcttctttctatctaacgtgcttacgatagtaaatcacaaaattgcacgacgaaacatatcatggataatgt |
202 |
Q |
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| T |
47691805 |
cacacacagtctaacgtgcttctttaaatattctttctgtctaacgtgcttacgatagtaaatcacaaaattgcacgacg-aacatatcatggataatgt |
47691707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 274 - 362
Target Start/End: Complemental strand, 47691635 - 47691548
Alignment:
| Q |
274 |
cttgtgagcaaattttactaaactgtatcacaaatatatctaattggagtcttattacaaagcaaccgaaaacatacaccaacccaaaa |
362 |
Q |
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| T |
47691635 |
cttgtgagcaaattttactaaactgtatcacaaatatatctaagtggagtcttattacaaagcaaccg-aaacatacaccaaccaaaaa |
47691548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 122 - 177
Target Start/End: Complemental strand, 47680112 - 47680057
Alignment:
| Q |
122 |
ttctttaaatcttctttctatctaacgtgcttacgatagtaaatcacaaaattgca |
177 |
Q |
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| T |
47680112 |
ttctttacattttcattctgtctaacgtgcttacgatagtaaattacaaaattgca |
47680057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 652 - 699
Target Start/End: Complemental strand, 47771591 - 47771544
Alignment:
| Q |
652 |
ttcttgaacacaaagtaatccaacatggatgcatctcattgtttcatt |
699 |
Q |
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| T |
47771591 |
ttcttgaacacaaagtaagccaatatggatgcatctcattatttcatt |
47771544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 352 - 403
Target Start/End: Complemental strand, 47679825 - 47679774
Alignment:
| Q |
352 |
ccaacccaaaagaaagacaaaattcaatcaaatataaaagattttcacaatc |
403 |
Q |
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| T |
47679825 |
ccaacccaaaagaaagacaaaatttaattgaatataaaagattagcacaatc |
47679774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 81
Target Start/End: Complemental strand, 47691844 - 47691813
Alignment:
| Q |
50 |
ttgttatctctcatcattagttctataaacac |
81 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
47691844 |
ttgttatctctcatcattagttctataaacac |
47691813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 653 - 691
Target Start/End: Original strand, 6514564 - 6514602
Alignment:
| Q |
653 |
tcttgaacacaaagtaatccaacatggatgcatctcatt |
691 |
Q |
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| T |
6514564 |
tcttgaacacaaagtaatccaatatggatacatctcatt |
6514602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 274 - 334
Target Start/End: Complemental strand, 47679980 - 47679922
Alignment:
| Q |
274 |
cttgtgagcaaattttactaaactgtatcacaaatatatctaattggagtcttattacaaa |
334 |
Q |
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|||||||||||||| ||||||||||||||||||||||| |||| || | |||||||||| |
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| T |
47679980 |
cttgtgagcaaatt--actaaactgtatcacaaatatatgtaatcggggctttattacaaa |
47679922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 53 - 87
Target Start/End: Original strand, 19973159 - 19973193
Alignment:
| Q |
53 |
ttatctctcatcattagttctataaacactttctc |
87 |
Q |
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||||| ||||||||||||||||||||||||||||| |
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| T |
19973159 |
ttatccctcatcattagttctataaacactttctc |
19973193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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