View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21256_low_10 (Length: 433)
Name: NF21256_low_10
Description: NF21256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21256_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 232
Target Start/End: Complemental strand, 41244451 - 41244237
Alignment:
| Q |
18 |
gtattaggtagatacttttggtaagccacattgacataattcatgatacatatattttgtttcatgaatcattccatggttagagatgtttgataggctt |
117 |
Q |
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| T |
41244451 |
gtatcaggtagatacttttggtaagccacattggcataattcatgatacatatattttgtttcatgaatcattccatggttagagatgtttgataggctt |
41244352 |
T |
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| Q |
118 |
acgcggatctagataagctacactgagcatctttgtattttctacttaaattcaagcatataactgtctcgatcatttatggacctgtcacacaacataa |
217 |
Q |
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| T |
41244351 |
acgcggatctagataagctacactgagcatctttgtattttctacttaaattcaagcatataactgtctcgatcatttatggacctgtcacacaacataa |
41244252 |
T |
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| Q |
218 |
atgggaatgtgggac |
232 |
Q |
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| T |
41244251 |
atgggaatgtgggac |
41244237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 293 - 420
Target Start/End: Complemental strand, 41244177 - 41244050
Alignment:
| Q |
293 |
gatgggtcctagctccttaacaaaacttcgttcattttccaatctgaaaacacatttattagcaaccacgaaatgtatgagcaaaacattactgcttttt |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41244177 |
gatgggtcctagctccttaacaaaacttcgttcattttccaatctgaaaacacatttattagcaaccacgaaatgtatgagcaaaacattactgcttttt |
41244078 |
T |
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| Q |
393 |
cacctaataaataataaaatctcccttc |
420 |
Q |
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| T |
41244077 |
cacctaataaataataaaatctcccttc |
41244050 |
T |
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