View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21256_low_17 (Length: 319)

Name: NF21256_low_17

Description: NF21256

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF21256_low_17

[»] chr5 (1 HSPs)

Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 220; E-Value: 1e-121

Query Start/End: Original strand, 19 - 313

Target Start/End: Complemental strand, 34876817 - 34876520

Alignment:

Q	19	actttctaaaccaaaagatcaaatattagattgagctgcactttcttcaggattaagtctttgcaagctcgtaaaccacatcattgccataatttgct--	116	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	34876817	actttctaaaccaaaagatcaaatattagattgagctgcactttcttcaggattaactctttgcaagctcgtaaaccacatcattgccataatttgctgc	34876718	T

Q	117	-acggtgaattgtctgccataatgttaatgtggtttccgctggtgaatcaatttggtttacggttttttatttaatatggttttcatatcggataaattt	215	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	34876717	tacggtgaattgtcttccataatgttaatgtggtttccgctgatgaatcaatttggtttgcggttttttatttaatgtgattttcatatcaaataaattc	34876618	T

Q	216	tcaatgcttcatgttaatgtattgtgagtttaagcggagatgttagataacatgtaaagagaattatgttataattggactaaagatagtataatcta	313	Q
		\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	34876617	tcaatgttttatgttaatgtattgtgagtttgaacggagatgttagataacatgaaaagagaattttgttataattggactaaagatagtttaatcta	34876520	T

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