View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21256_low_18 (Length: 318)
Name: NF21256_low_18
Description: NF21256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21256_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 36 - 302
Target Start/End: Original strand, 31320589 - 31320856
Alignment:
| Q |
36 |
taagcaaacatgctcacgtggtgaataagcttcaccaataacaaattattcaagagaacacgaattcgattccgatataaaacaatctttgatcagactt |
135 |
Q |
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| T |
31320589 |
taagcaaacatgctcaagtggttaataagcttcaccaataacaaattattcaagagaacacgaattcgattccgatataaaacaatctttgatcagactt |
31320688 |
T |
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| Q |
136 |
tatttaccttctcactgaactttagattaccaaagttatgtttt-tcttaaaatcatagaattaacccatcaaaataatctatcaatttgaatattattt |
234 |
Q |
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|||||||||| |||| |||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31320689 |
tatttaccttttcaccgaactttagattaccaaaattattttttttcttaaaatcatagaattaacccatcaaaataatctatcaatttgaatattattt |
31320788 |
T |
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| Q |
235 |
ttcttagagacttgggccacaagcaaattatgatatacagtcaaaaatcaaacccccaaataagaaaa |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31320789 |
ttcttagagacttgggccacaagcaaattatgatatacagtcaaaaatcaaacccccaaataagaaaa |
31320856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 35 - 167
Target Start/End: Original strand, 31320424 - 31320555
Alignment:
| Q |
35 |
ctaagcaaacatgctcacgtggtgaataagcttcaccaataacaaattattcaagagaacacgaattcgattccgatataaaacaatctttgatcagact |
134 |
Q |
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|||| |||| ||||||| |||| ||| | |||||||||||||||||| ||||||| || |||| |||||||| | ||||||||||||||||||||||| |
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| T |
31320424 |
ctaaacaaatatgctcaaatggttaatgaacttcaccaataacaaattgttcaagaaaatacgagctcgattcctaaataaaacaatctttgatcagact |
31320523 |
T |
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| Q |
135 |
ttatttaccttctcactgaactttagattacca |
167 |
Q |
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||||||| || || || ||| |||||||||||| |
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| T |
31320524 |
ttattta-ctccttaccgaaatttagattacca |
31320555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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