View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21256_low_19 (Length: 312)
Name: NF21256_low_19
Description: NF21256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21256_low_19 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 19 - 312
Target Start/End: Original strand, 30877556 - 30877849
Alignment:
| Q |
19 |
caaagcacctggaatgacacaacgaagagtatcaagatgtgcattaatcctagctcttctcctcctttcggcctcactatgattcttcaaagcttcaaca |
118 |
Q |
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| T |
30877556 |
caaagcacctggaatgacacaacgaagagtatcaagatgtgcattaatcctagctcttctcctcctttctgcctcactatgattcttcaaagcttcaaca |
30877655 |
T |
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| Q |
119 |
cttctctctgtagtggacacaccctttccttccattttaacaggtgcctctacaagctcccctctctccctatccaaaaccagagagaaacttgaaccat |
218 |
Q |
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| T |
30877656 |
cttctctctgtagtggacacaccctttccttccattttaacaggttcctctacaagctcccctctctccctatccaaaaccagagagaaacttgaaccat |
30877755 |
T |
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| Q |
219 |
acccacttccaattacctcattgtttacttcaaaaccatttttactaattctctcagtagcatctccaaatatatcataaccttccatttccat |
312 |
Q |
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| T |
30877756 |
acccacttccaattacctcattgtttacttcaaaaccatttttaccaattctctcagtagcatctccaaatatatcataaccttccatttccat |
30877849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 26 - 234
Target Start/End: Original strand, 39332728 - 39332933
Alignment:
| Q |
26 |
cctggaatgacacaacgaagagtatcaagatgtgcattaatcctagctcttctcctcctttcggcctcactatgattcttcaaagcttcaacacttctct |
125 |
Q |
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| T |
39332728 |
cctggaataacactacgaagtgtatcaagatgtgaattaattcttgctcttctccttctttctgcttcactatgattcttcaaagcttcaatacttctct |
39332827 |
T |
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| Q |
126 |
ctgtagtggacacaccctttccttccattttaacaggtgcctctacaagctcccctctctccctatccaaaaccagagagaaacttgaaccatacccact |
225 |
Q |
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| T |
39332828 |
c---aggtgatacaccctttctttccaatttcacagctgcctccacaagctctcctttttctctatctaaaaccagtgaagaagatgaaccatatccatt |
39332924 |
T |
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| Q |
226 |
tccaattac |
234 |
Q |
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|||| |||| |
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| T |
39332925 |
tccatttac |
39332933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 234
Target Start/End: Original strand, 30203571 - 30203705
Alignment:
| Q |
97 |
atgattcttcaaagcttcaacacttctctctgtagtggacacaccctttccttccattttaacaggtgcctctacaagctcccctctctccctatccaaa |
196 |
Q |
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| T |
30203571 |
atgattcttcaaagcttcaatacttctctc---aggtgacacaccctttctttctaatttcacagttgcctccacaaactctcctttttctctatccaaa |
30203667 |
T |
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| Q |
197 |
accagagagaaacttgaaccatacccacttccaattac |
234 |
Q |
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| T |
30203668 |
accagcgaagaagatgaaccatatccatttccatttac |
30203705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 34 - 234
Target Start/End: Original strand, 12102483 - 12102677
Alignment:
| Q |
34 |
gacacaacgaagagtatcaagatgtgcattaatcctagctcttctcctcctttcggcctcactatgattcttcaaagcttcaacacttctctctgtagtg |
133 |
Q |
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| T |
12102483 |
gacactacgaagtgtatcaagatgtaaattaattcttgctcttctcctc---tctgcttcactatgattcttcaaagcttcgatacttctccc---aggt |
12102576 |
T |
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| Q |
134 |
gacacaccctttccttccattttaacaggtgcctctacaagctcccctctctccctatccaaaaccagagagaaacttgaaccatacccacttccaatta |
233 |
Q |
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| T |
12102577 |
gacacaccctttctttctaatttcacagctgcctccacaagctctcctttttctctatccaaaaccagtgaagaagatgaaccatatccacttccattta |
12102676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 226
Target Start/End: Original strand, 17146474 - 17146603
Alignment:
| Q |
92 |
tcactatgattcttcaaagcttcaacacttctctctgtagtggacacaccctttccttccattttaacaggtgcctctacaagctcccctctctccctat |
191 |
Q |
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||||||||||||||||||||||||| ||||||||| | ||| |||||||||| ||| | ||| |||| |||||| ||||||| ||| | || |||| |
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| T |
17146474 |
tcactatgattcttcaaagcttcaatacttctctcag--gtg---acaccctttctttctaatttcacagctgcctccgcaagctctcctttttctctat |
17146568 |
T |
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| Q |
192 |
ccaaaaccagagagaaacttgaaccatacccactt |
226 |
Q |
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| T |
17146569 |
ccaaaaccagtgaagaagatgaaccatatccactt |
17146603 |
T |
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