View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21256_low_22 (Length: 279)
Name: NF21256_low_22
Description: NF21256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21256_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 7e-92; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 22973416 - 22973675
Alignment:
| Q |
1 |
ctaagttgtctccaataatcaccaaaaggtgcaaaagctatatctgtcgaatcataaaagattatctctgaggttagagttaaaggccttgatgcaaata |
100 |
Q |
| |
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||||| |||||||||||||||||| | |||| ||||||||||||||| ||| ||||||| ||||||||||||||||| |||||||||||||| ||||||| |
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| T |
22973416 |
ctaagctgtctccaataatcaccatatggtgaaaaagctatatctgttgaaccataaaacattatctctgaggttagtgttaaaggccttgacgcaaata |
22973515 |
T |
|
| Q |
101 |
ttacatcatgagttttcattatttcctttgcatattctgctgatgaaacaatagtaaagaaaacttcaccaagttgaagatgcattaaagggccatannn |
200 |
Q |
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| |||||||||||||||||||||||||| |||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||| ||||| |
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| T |
22973516 |
taacatcatgagttttcattatttccttagcatattctgctgaggatacaatagtaaataaaacttcaccaagttgaagatgcattaaagcaccatattt |
22973615 |
T |
|
| Q |
201 |
nnnngacaattctcttaattttctatgtggttgagagccaataagattatgtatgtttcc |
260 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
22973616 |
tgttgacaattctcttaattttctatgtggtggagagccaataagattatgtatgtttcc |
22973675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 22947578 - 22947841
Alignment:
| Q |
1 |
ctaagttgtctccaataatcaccaaaaggtgcaaaagctatatctgtcgaatcataaaagattatctctgaggttagagttaaaggccttgatgcaaata |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||||| ||| |||||||| |||| ||||||||||||||| || |||||||||||| ||||| |
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| T |
22947578 |
ctaagttgtctccaataatcaccataaggtgaaaaagctatacttgttgaatcatagaagactatctctgaggttagtgtagaaggccttgatgaaaata |
22947677 |
T |
|
| Q |
101 |
ttacatcatgagttttcattatttcctttgcatattctgctgatgaaacaatagtaaagaaaacttcaccaagttgaagatgcattaaagggccatannn |
200 |
Q |
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|||||||||||||||||||||||||| | |||||||||||||| ||||||||| | || || ||||||||||||||||||||||||||||||||||| |
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| T |
22947678 |
ttacatcatgagttttcattatttccatagcatattctgctgaggaaacaataatgaaaaagacttcaccaagttgaagatgcattaaagggccatattt |
22947777 |
T |
|
| Q |
201 |
nnnngacaattctcttaattttctatgtggttgagagccaataagattatgtatgtttcctatg |
264 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
22947778 |
atttgacaattctcttaattttctatgtggtggagagccaataagattatgtatgtttcctatg |
22947841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 22997584 - 22997815
Alignment:
| Q |
1 |
ctaagttgtctccaataatcaccaaaaggtgcaaaagctatatctgtcgaatcataaaagattatctctgaggttagagttaaaggccttgatgcaaata |
100 |
Q |
| |
|
||||||||||||||| ||||||| | |||| |||| |||||| ||| ||||||||||| |||||||| |||||||||||||||||||||||| |||||| |
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| T |
22997584 |
ctaagttgtctccaa--atcaccatagggtggaaaacctatatttgttgaatcataaaatattatctccgaggttagagttaaaggccttgatacaaata |
22997681 |
T |
|
| Q |
101 |
ttacatcatgagttttcattatttcctttgcatattctgctgatgaaacaatagtaaagaaaacttcaccaagttgaagatgcattaaagggccatannn |
200 |
Q |
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| |||||||||||||||||||||||||| |||||||||||||| ||||||||| ||| | | |||||||||||||||||||||||||||| |||||| |
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| T |
22997682 |
taacatcatgagttttcattatttccttagcatattctgctgaggaaacaataataaggtagacttcaccaagttgaagatgcattaaagtgccatattt |
22997781 |
T |
|
| Q |
201 |
nnnngacaattctcttaattttctatgtggttga |
234 |
Q |
| |
|
||||||||||||||||||| |||| ||||| |
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| T |
22997782 |
ttttgacaattctcttaattttcaatgttgttga |
22997815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 83 - 263
Target Start/End: Original strand, 22943062 - 22943242
Alignment:
| Q |
83 |
aaggccttgatgcaaatattacatcatgagttttcattatttcctttgcatattctgctgatgaaacaatagtaaagaaaacttcaccaagttgaagatg |
182 |
Q |
| |
|
|||||||||||| |||| | |||||||||||||||||||| ||||| |||||||| ||||| |||||||| ||||| | |||||||||||||||||||| |
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| T |
22943062 |
aaggccttgatgaaaatgtaacatcatgagttttcattatctccttagcatattcagctgaggaaacaattataaagcagacttcaccaagttgaagatg |
22943161 |
T |
|
| Q |
183 |
cattaaagggccatannnnnnngacaattctcttaattttctatgtggttgagagccaataagattatgtatgtttcctat |
263 |
Q |
| |
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|||||||||||||| |||| ||||| ||||||||||||| || ||||||||| |||||||| ||||||||||| |
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| T |
22943162 |
cattaaagggccatgaatttttgacagttctcctaattttctatgtagtggagagccaaatagattatggatgtttcctat |
22943242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 22987310 - 22987427
Alignment:
| Q |
1 |
ctaagttgtctccaataatcaccaaaaggtgcaaaagctatatctgtcgaatcataaaagattatctctgaggttagagttaaaggccttgatgcaaata |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||||||||||||| |||| ||| | | |||||| || |||| ||||||||||||||||| |
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| T |
22987310 |
ctaagttgtctccaataatcaccataaggtgaaaaagctatatctgttgaattgtaagatactatctccaagactagaagatgaggccttgatgcaaata |
22987409 |
T |
|
| Q |
101 |
ttacatcatgagttttca |
118 |
Q |
| |
|
| | |||||||||||||| |
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|
| T |
22987410 |
taatatcatgagttttca |
22987427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 22914272 - 22914236
Alignment:
| Q |
1 |
ctaagttgtctccaataatcaccaaaaggtgcaaaag |
37 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||| |
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| T |
22914272 |
ctaagttgtctccaataatcaccataaggtgaaaaag |
22914236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 22933819 - 22933855
Alignment:
| Q |
1 |
ctaagttgtctccaataatcaccaaaaggtgcaaaag |
37 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||| |
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|
| T |
22933819 |
ctaagttgtctccaataatcaccataaggtgaaaaag |
22933855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 23611375 - 23611418
Alignment:
| Q |
1 |
ctaagttgtctccaataatcaccaaaaggtgcaaaagctatatc |
44 |
Q |
| |
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|||||||||||||||||||||||| |||||| |||||||||||| |
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| T |
23611375 |
ctaagttgtctccaataatcaccataaggtgaaaaagctatatc |
23611418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 14307488 - 14307531
Alignment:
| Q |
1 |
ctaagttgtctccaataatcaccaaaaggtgcaaaagctatatc |
44 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||||||| |
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|
| T |
14307488 |
ctaagttgtctccaataatcaccataaggtgaaaaagctatatc |
14307531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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