View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21256_low_25 (Length: 252)
Name: NF21256_low_25
Description: NF21256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21256_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 134; Significance: 7e-70; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 109 - 242
Target Start/End: Original strand, 50128782 - 50128915
Alignment:
| Q |
109 |
aactctttagttacaaacagtttcattttttatgaagtcaaattatcattgataacaaaacatttttaacgattgatgcattggtttggtgaccacaatc |
208 |
Q |
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| T |
50128782 |
aactctttagttacaaacagtttcattttttatgaagtcaaattatcattgataacaaaacatttttaacgattgatgcattggtttggtgaccacaatc |
50128881 |
T |
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| Q |
209 |
ttgcacttctcatgtaacaatttgagtgtctgtg |
242 |
Q |
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| T |
50128882 |
ttgcacttctcatgtaacaatttgagtgtctgtg |
50128915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 50128685 - 50128757
Alignment:
| Q |
3 |
aaatgaaactcatgttattgttgaacttccatgtatgctttcatcttctatcaagacaacgtcaatttttttt |
75 |
Q |
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| T |
50128685 |
aaatgaaactcatgttattgttgaacttccatgcatcctttcatcttctatcaagacaacgtcagtttttttt |
50128757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 109 - 175
Target Start/End: Original strand, 50125031 - 50125098
Alignment:
| Q |
109 |
aactctttagttacaaacagtttcattttttatgaagtcaaattatca-ttgataacaaaacattttt |
175 |
Q |
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| T |
50125031 |
aactcttcagttacaaacaaattcattttttatgaagtcaaattatcatttgataacaaaacattttt |
50125098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 50124952 - 50125018
Alignment:
| Q |
3 |
aaatgaaactcatgttattgttgaact--tccatgtatgctttcatcttctatc-aagacaacgtcaa |
67 |
Q |
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| T |
50124952 |
aaatgaaactcatgttattgtt-aacttatgcatgtatgctttcatattctatcaaagacaacgtcaa |
50125018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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