View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21256_low_4 (Length: 610)
Name: NF21256_low_4
Description: NF21256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21256_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-110; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 8461703 - 8461501
Alignment:
| Q |
1 |
ctcttgcaattgaaatagccatgttgagctccattgattgaaattgaaatggttgttgagtaagatggtttcaattcaattgcaaaagactgtactttaa |
100 |
Q |
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| T |
8461703 |
ctcttgcaattgaaatagccatgttgagctccattgattgaaattgaaatggttgttgagtaagatggtttcaattcaattgcaaaagactgtactttaa |
8461604 |
T |
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| Q |
101 |
gaaaaaactcccaattaagagtatcaaaagctttggaaacagctatcttgagggccaagttaccaccgaatctctttttatcaagcagatttatggcttt |
200 |
Q |
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| T |
8461603 |
gaaaaaactcccaattaagagtatcaaaagctttggaaacagctatcttgagggccaagttaccaccgaatctctttttatcaagcagatttatggcttt |
8461504 |
T |
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| Q |
201 |
aga |
203 |
Q |
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||| |
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| T |
8461503 |
aga |
8461501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 195 - 384
Target Start/End: Original strand, 8461820 - 8462009
Alignment:
| Q |
195 |
ggctttagatatgtgcaggtgccttctcattgtttttatgctaatgactttatggtatactacaaaggtaagctatctagcctggaggctcataaagcta |
294 |
Q |
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| T |
8461820 |
ggctttagatatgtgcaggtgccttctcattgtttttatgctaatgactttatggtatactacaaaggtaagctatctagcctggaggctcatgaagcta |
8461919 |
T |
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| Q |
295 |
ttttttctagataagatgtttgttctagtcagattataaacgcaatgaaatcttctattcattttggtggtatcaatcaaactagaatgg |
384 |
Q |
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| T |
8461920 |
ttttttctagatatgatgtttgttctagtcagattataaacgcaatgaaatcttctattcattttggtggtatcaatcaaaatagaatgg |
8462009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 484 - 596
Target Start/End: Original strand, 8462099 - 8462211
Alignment:
| Q |
484 |
gttaaatcagtgagcacagcatgtttctttgatcaaagagttagagaagtggttcaaaaatttcagatggagtggtgatatataaaaaattaagacgatt |
583 |
Q |
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| T |
8462099 |
gttaaatcagtgagcacagcatgtttctttgatcaaagagttagagaagtggttcaaaaatttcagatggagtggtgatatatcaaaaatgaagacgttt |
8462198 |
T |
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| Q |
584 |
acttagttaaaat |
596 |
Q |
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||||||||||||| |
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| T |
8462199 |
acttagttaaaat |
8462211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 416
Target Start/End: Original strand, 8462041 - 8462075
Alignment:
| Q |
382 |
tggttctttacctttacggctatacttgccttgaa |
416 |
Q |
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| T |
8462041 |
tggttctttacctttacggctttacttgccttgaa |
8462075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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