View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21256_low_5 (Length: 609)

Name: NF21256_low_5
Description: NF21256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21256_low_5
NF21256_low_5
[»] chr7 (3 HSPs)
chr7 (387-590)||(27776866-27777069)
chr7 (71-281)||(27776564-27776790)
chr7 (459-523)||(19741093-19741157)
[»] chr5 (2 HSPs)
chr5 (459-510)||(41218921-41218972)
chr5 (458-522)||(26472136-26472200)
[»] scaffold0164 (1 HSPs)
scaffold0164 (460-522)||(27146-27208)
[»] chr8 (1 HSPs)
chr8 (460-522)||(15193146-15193208)
[»] chr4 (5 HSPs)
chr4 (460-522)||(18254024-18254086)
chr4 (459-523)||(51764235-51764299)
chr4 (461-514)||(22643579-22643632)
chr4 (458-522)||(22176935-22176999)
chr4 (458-522)||(23167441-23167505)
[»] chr3 (3 HSPs)
chr3 (460-522)||(53978164-53978226)
chr3 (458-522)||(8836233-8836297)
chr3 (458-522)||(55310168-55310232)
[»] chr1 (2 HSPs)
chr1 (460-522)||(49641073-49641135)
chr1 (458-522)||(52777903-52777967)
[»] chr2 (2 HSPs)
chr2 (459-523)||(19481630-19481694)
chr2 (459-523)||(11337765-11337829)
[»] chr6 (2 HSPs)
chr6 (458-523)||(34309881-34309946)
chr6 (459-498)||(21320833-21320870)
[»] scaffold0329 (1 HSPs)
scaffold0329 (458-522)||(11232-11296)


Alignment Details
Target: chr7 (Bit Score: 160; Significance: 6e-85; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 387 - 590
Target Start/End: Original strand, 27776866 - 27777069
Alignment:
Q  387 atctgatgacaattgtgaagaatttatgtttgagtcttttttacagaagtaagggtattttacattaactttcttgtgttgaaacaccccaacaaaatgg 486  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||| ||| || |||||||| ||||||||||||||||||||||||||||||||||||||    
T  27776866 atctgatgacaattgagaagaatttatgtttgagtctattttacaaaagaaatggtattttgcattaactttcttgtgttgaaacaccccaacaaaatgg 27776965  T
Q  487 ggtggttgaaaggaagtatcaacatattctcaatgtgtcaaggaccttaatgtttcattatcatattcctatctctttttgtgcttatgctatttcacat 586  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||| |||||||||||||||||    
T  27776966 ggtggttgaaaggaagcatcaacatattctcaatgtgtcaaggaccttaatatttcaatatcagattcctatctctttttgttcttatgctatttcacat 27777065  T
Q  587 gatg 590  Q
    ||||    
T  27777066 gatg 27777069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 71 - 281
Target Start/End: Original strand, 27776564 - 27776790
Alignment:
Q  71 gatcattgtcttgtaaaggaaatgaatac---gaagatgattggcaaagctagagcggctcatggattatatgaagttgattttcctcaatctaatccag 167  Q
    |||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27776564 gatcattgtcttgtaaaggaaatgaataccttgaagatgattggcaaagctagagcggctcatggattatatgaagttgattttcctcaatctaatccag 27776663  T
Q  168 ttccatt--------------ttgcaaataatacttgtacaaacattcctcattccaatatatggcgttacagattaagccatccatcccctattacact 253  Q
    |||||||              ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  27776664 ttccatttccttttaaacattttgcaaataatacttgtacaaacattcctcattccaatatacggcgttacagattaagccatccat-ccctattacact 27776762  T
Q  254 cttataagaatgacaattcatatatttt 281  Q
    |||||||||||||||||||||| |||||    
T  27776763 cttataagaatgacaattcatagatttt 27776790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 459 - 523
Target Start/End: Original strand, 19741093 - 19741157
Alignment:
Q  459 cttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgtg 523  Q
    |||||||||| || || |||||||||||||| |||||||| ||| ||||||| ||||| ||||||    
T  19741093 cttgtgttgagacgcctcaacaaaatggggttgttgaaagaaagcatcaacacattcttaatgtg 19741157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 459 - 510
Target Start/End: Complemental strand, 41218972 - 41218921
Alignment:
Q  459 cttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaaca 510  Q
    ||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  41218972 cttgtgttgaaaccccccaacaaaatggggtggttgaaaggaagcatcaaca 41218921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 458 - 522
Target Start/End: Original strand, 26472136 - 26472200
Alignment:
Q  458 tcttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgt 522  Q
    |||||||||||||| ||||||||||||||    |||||||| ||| ||||||||||||| |||||    
T  26472136 tcttgtgttgaaactccccaacaaaatggtagagttgaaagaaagcatcaacatattcttaatgt 26472200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0164 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 460 - 522
Target Start/End: Complemental strand, 27208 - 27146
Alignment:
Q  460 ttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgt 522  Q
    |||||||||||| |||||||||||||||   |||||||||||| ||||||||||||| |||||    
T  27208 ttgtgttgaaactccccaacaaaatgggagagttgaaaggaagcatcaacatattcttaatgt 27146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 460 - 522
Target Start/End: Original strand, 15193146 - 15193208
Alignment:
Q  460 ttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgt 522  Q
    |||||||||||| |||||||||||||||   |||||||||||| ||||||||||||| |||||    
T  15193146 ttgtgttgaaactccccaacaaaatgggagagttgaaaggaagcatcaacatattcttaatgt 15193208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 460 - 522
Target Start/End: Original strand, 18254024 - 18254086
Alignment:
Q  460 ttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgt 522  Q
    |||||||||||| |||||||||||||||   |||||||||||| ||||||||||||| |||||    
T  18254024 ttgtgttgaaactccccaacaaaatgggagagttgaaaggaagcatcaacatattcttaatgt 18254086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 459 - 523
Target Start/End: Original strand, 51764235 - 51764299
Alignment:
Q  459 cttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgtg 523  Q
    |||||||||| || || |||||||||||||| |||||||| ||| ||||||| ||||||||||||    
T  51764235 cttgtgttgagacgcctcaacaaaatggggttgttgaaagaaagaatcaacacattctcaatgtg 51764299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 461 - 514
Target Start/End: Original strand, 22643579 - 22643632
Alignment:
Q  461 tgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatatt 514  Q
    ||||||||||| |||||||||||||||  ||||||||| ||| |||||||||||    
T  22643579 tgtgttgaaactccccaacaaaatgggagggttgaaagaaagcatcaacatatt 22643632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 458 - 522
Target Start/End: Complemental strand, 22176999 - 22176935
Alignment:
Q  458 tcttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgt 522  Q
    |||||||||||||| ||||||||||||||    || ||||||||  | |||||||||||||||||    
T  22176999 tcttgtgttgaaactccccaacaaaatggtagagtagaaaggaaacaccaacatattctcaatgt 22176935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 458 - 522
Target Start/End: Complemental strand, 23167505 - 23167441
Alignment:
Q  458 tcttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgt 522  Q
    ||||||||||| || |||||||||||||||   |||||||| ||| | ||||| |||||||||||    
T  23167505 tcttgtgttgagactccccaacaaaatgggagagttgaaagaaagcaccaacacattctcaatgt 23167441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 460 - 522
Target Start/End: Original strand, 53978164 - 53978226
Alignment:
Q  460 ttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgt 522  Q
    |||||||||||| |||||||||||||||   |||||||||||| ||||||||||||| |||||    
T  53978164 ttgtgttgaaactccccaacaaaatgggagagttgaaaggaagcatcaacatattcttaatgt 53978226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 458 - 522
Target Start/End: Original strand, 8836233 - 8836297
Alignment:
Q  458 tcttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgt 522  Q
    |||||||||||||| ||||||||||||||    |||||||| ||| ||||||||||||| |||||    
T  8836233 tcttgtgttgaaactccccaacaaaatggtagagttgaaagaaagcatcaacatattcttaatgt 8836297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 458 - 522
Target Start/End: Original strand, 55310168 - 55310232
Alignment:
Q  458 tcttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgt 522  Q
    |||||||||||||| ||||||||||||||    |||||||| ||| ||||| ||||||| |||||    
T  55310168 tcttgtgttgaaactccccaacaaaatggtagagttgaaagaaagcatcaatatattcttaatgt 55310232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 460 - 522
Target Start/End: Complemental strand, 49641135 - 49641073
Alignment:
Q  460 ttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgt 522  Q
    |||||||||||| |||||||||||||||   |||||||||||| ||||||||||||| |||||    
T  49641135 ttgtgttgaaactccccaacaaaatgggagagttgaaaggaagcatcaacatattcttaatgt 49641073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 458 - 522
Target Start/End: Original strand, 52777903 - 52777967
Alignment:
Q  458 tcttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgt 522  Q
    |||||||||||||| ||||||||||||||    || ||||||||  | |||||||||||||||||    
T  52777903 tcttgtgttgaaactccccaacaaaatggtagagtagaaaggaaacaccaacatattctcaatgt 52777967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 459 - 523
Target Start/End: Original strand, 19481630 - 19481694
Alignment:
Q  459 cttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgtg 523  Q
    |||||||||| || || |||||||||||||| |||||||| ||| ||||||| ||||||||||||    
T  19481630 cttgtgttgagacgcctcaacaaaatggggttgttgaaagaaagcatcaacacattctcaatgtg 19481694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 459 - 523
Target Start/End: Original strand, 11337765 - 11337829
Alignment:
Q  459 cttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgtg 523  Q
    |||||||||| || || |||||||||||||  |||||||| ||| ||||||| ||||||||||||    
T  11337765 cttgtgttgagacgcctcaacaaaatggggctgttgaaagaaagcatcaacacattctcaatgtg 11337829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 458 - 523
Target Start/End: Original strand, 34309881 - 34309946
Alignment:
Q  458 tcttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgtg 523  Q
    ||||||||||| || || |||||||||||  | || ||||||||| |||||||||| |||||||||    
T  34309881 tcttgtgttgagactcctcaacaaaatggtattgtagaaaggaagcatcaacatatcctcaatgtg 34309946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 459 - 498
Target Start/End: Original strand, 21320833 - 21320870
Alignment:
Q  459 cttgtgttgaaacaccccaacaaaatggggtggttgaaag 498  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  21320833 cttgtgttgaaac--cccaacaaaatggggtggttgaaag 21320870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 458 - 522
Target Start/End: Original strand, 11232 - 11296
Alignment:
Q  458 tcttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgt 522  Q
    |||||||||||||| ||||||||||||||    || ||||||||  | |||||||||||||||||    
T  11232 tcttgtgttgaaactccccaacaaaatggtagagtagaaaggaaacaccaacatattctcaatgt 11296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University