View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21256_low_6 (Length: 546)
Name: NF21256_low_6
Description: NF21256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21256_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 490; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 4 - 530
Target Start/End: Original strand, 32206429 - 32206955
Alignment:
| Q |
4 |
gagttcattcatgattattgctccgactcagagtttctgatagtattctcagcgatctgacccaacgactgtaaattacaacgtacaatagtatcaacnn |
103 |
Q |
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| T |
32206429 |
gagttcattcatgattattgctcagactcagagtttctgatagtattctcagcgatctgacccaacgactgtaaattacaacgtacaatagtatcaacaa |
32206528 |
T |
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| Q |
104 |
nnnnncacgtttcctccttcgtgttaccttgcggtacatcaacgacgaatgattcaatgacaagtgtcctatctccgccgacagaatgaagcgtcgtcac |
203 |
Q |
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| T |
32206529 |
aaaaacacgtttcctccttcgtgttaccttgcggtacatcaacaacgtatgattcaatgacaagtgtcctatctccgtcgacagaatgaagcgtcgtcac |
32206628 |
T |
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| Q |
204 |
cgaccggtagtttctcagacggtggtccccaccaacaacactgaagctgatgacgtggcgttcatcgtcaagaatctccagcctttcagtgctggactca |
303 |
Q |
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| T |
32206629 |
cgaccggtagtttctcagacggtggtccccaccaacaacactgaagctgatgacgtggcgttcatcgtcaagaatctccagcctttcagtgctggactca |
32206728 |
T |
|
| Q |
304 |
gctggaagtcctgaaacaacacgaacttcacggacggcgccgacggtgatgttttctccggtgatgacttggcagcttttgacgaagtttttgtatcctt |
403 |
Q |
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| T |
32206729 |
gctggaagtcctgaaacaacacgaacttcacggacggcgccgacggtgatgttttctccggtgatgacttggcagcttttgacgaagtttttgtatcctt |
32206828 |
T |
|
| Q |
404 |
gtggattttcgaagcgtcgaactacaggccatacggcggagataggggcggagattgtttgtgtgacgacggagcagcactggtttggtccaaccatgtg |
503 |
Q |
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| T |
32206829 |
gtggattttcgaagcgtcgaactacaggccatacggcggagataggggcggagattgtttgtgtgacgacggagcagcactggtttggtccaaccatgtg |
32206928 |
T |
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| Q |
504 |
tgcgtggtgaagagataacgtgtctag |
530 |
Q |
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| T |
32206929 |
tgcgtggtgaagagataacgtgtctag |
32206955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 366 - 419
Target Start/End: Complemental strand, 25812424 - 25812371
Alignment:
| Q |
366 |
gatgacttggcagcttttgacgaagtttttgtatccttgtggattttcgaagcg |
419 |
Q |
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| T |
25812424 |
gatgacatggcagcttttgacgaagtgtttgtaggcttgtggattgtcgaagcg |
25812371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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