View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21256_low_8 (Length: 515)

Name: NF21256_low_8
Description: NF21256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21256_low_8
NF21256_low_8
[»] chr4 (9 HSPs)
chr4 (251-399)||(11841895-11842045)
chr4 (294-394)||(11802045-11802145)
chr4 (297-399)||(11856335-11856437)
chr4 (294-382)||(11431212-11431300)
chr4 (294-382)||(11564166-11564254)
chr4 (323-379)||(11808050-11808106)
chr4 (449-493)||(47119011-47119055)
chr4 (450-490)||(29778776-29778816)
chr4 (454-490)||(30207620-30207656)
[»] chr8 (9 HSPs)
chr8 (450-493)||(9834835-9834878)
chr8 (450-492)||(1561255-1561297)
chr8 (450-492)||(2091742-2091784)
chr8 (451-491)||(7514560-7514600)
chr8 (450-492)||(34770873-34770915)
chr8 (451-492)||(31884576-31884617)
chr8 (450-490)||(7645959-7645999)
chr8 (449-493)||(24558833-24558877)
chr8 (452-492)||(41208868-41208908)
[»] chr1 (9 HSPs)
chr1 (450-493)||(25006080-25006123)
chr1 (450-490)||(28467356-28467396)
chr1 (450-485)||(7218128-7218163)
chr1 (454-493)||(12564920-12564959)
chr1 (457-492)||(17422985-17423020)
chr1 (453-492)||(25005844-25005883)
chr1 (450-485)||(30371129-30371164)
chr1 (450-492)||(17269231-17269273)
chr1 (450-491)||(27738228-27738269)
[»] chr2 (8 HSPs)
chr2 (450-492)||(11513879-11513921)
chr2 (449-493)||(18066108-18066152)
chr2 (450-493)||(25800810-25800853)
chr2 (454-492)||(5043607-5043645)
chr2 (449-493)||(1625880-1625924)
chr2 (456-492)||(17952748-17952784)
chr2 (449-493)||(26626853-26626897)
chr2 (456-492)||(39983329-39983365)
[»] chr7 (4 HSPs)
chr7 (450-493)||(18516295-18516338)
chr7 (450-492)||(47046155-47046197)
chr7 (450-490)||(1417245-1417285)
chr7 (449-493)||(47177616-47177660)
[»] chr6 (5 HSPs)
chr6 (450-492)||(4006695-4006737)
chr6 (451-485)||(9668039-9668073)
chr6 (450-486)||(5550113-5550149)
chr6 (449-485)||(7485122-7485158)
chr6 (456-492)||(32917205-32917241)
[»] chr3 (10 HSPs)
chr3 (453-491)||(41057022-41057060)
chr3 (448-485)||(10132772-10132809)
chr3 (447-492)||(22214706-22214751)
chr3 (454-491)||(28306143-28306180)
chr3 (449-485)||(10101530-10101566)
chr3 (449-485)||(10212455-10212491)
chr3 (449-485)||(10357413-10357449)
chr3 (453-493)||(33405213-33405253)
chr3 (449-493)||(44061069-44061113)
chr3 (450-486)||(51197789-51197825)
[»] chr5 (4 HSPs)
chr5 (450-491)||(19138767-19138808)
chr5 (451-491)||(6587155-6587195)
chr5 (457-485)||(9703294-9703322)
chr5 (457-485)||(39823175-39823203)


Alignment Details
Target: chr4 (Bit Score: 84; Significance: 1e-39; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 251 - 399
Target Start/End: Original strand, 11841895 - 11842045
Alignment:
Q  251 cctaaagaagtaaaagaaaga--taagtacttgatgtgtgaggacagcaataactttatcaccagctttaaaatccttgacttgtggtccaacatctact 348  Q
    ||||| ||||| |||||||||  |||||||||||||||||||   |||||||||||| || |||| ||| ||||||||||||||||||||||| |||||     
T  11841895 cctaaggaagtgaaagaaagagataagtacttgatgtgtgagtttagcaataactttgtcgccagatttgaaatccttgacttgtggtccaacctctacc 11841994  T
Q  349 acctctcctgctacatcagtgcctgaatcaaagtaccaagatcaaaggaat 399  Q
    |||||||| ||||||||||||||||||||||||| |||||| |||||||||    
T  11841995 acctctccagctacatcagtgcctgaatcaaagtcccaagagcaaaggaat 11842045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 294 - 394
Target Start/End: Original strand, 11802045 - 11802145
Alignment:
Q  294 agcaataactttatcaccagctttaaaatccttgacttgtggtccaacatctactacctctcctgctacatcagtgcctgaatcaaagtaccaagatcaa 393  Q
    ||||||||||||||| ||| ||||||||||||||||||||  |||||  ||||| |||||||||||||||||||||||||||||||| | |||||| |||    
T  11802045 agcaataactttatctccaactttaaaatccttgacttgttctccaatctctacaacctctcctgctacatcagtgcctgaatcaaattcccaagagcaa 11802144  T
Q  394 a 394  Q
    |    
T  11802145 a 11802145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 297 - 399
Target Start/End: Original strand, 11856335 - 11856437
Alignment:
Q  297 aataactttatcaccagctttaaaatccttgacttgtggtccaacatctactacctctcctgctacatcagtgcctgaatcaaagtaccaagatcaaagg 396  Q
    ||||||||| || ||| |||||||||| |||||||| |||||||| ||||| |||||||||| ||||||||||||||||||||||| |||||| |||| |    
T  11856335 aataactttgtctccaactttaaaatcgttgacttgcggtccaacctctacaacctctcctgatacatcagtgcctgaatcaaagtcccaagagcaaaag 11856434  T
Q  397 aat 399  Q
    |||    
T  11856435 aat 11856437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 294 - 382
Target Start/End: Original strand, 11431212 - 11431300
Alignment:
Q  294 agcaataactttatcaccagctttaaaatccttgacttgtggtccaacatctactacctctcctgctacatcagtgcctgaatcaaagt 382  Q
    |||||||||||| || ||| |||| ||||| || ||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||    
T  11431212 agcaataactttgtctccaactttgaaatctttaacttgtgatccaaaatctactacctctcctgctacatcggtgcctgaatcaaagt 11431300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 294 - 382
Target Start/End: Complemental strand, 11564254 - 11564166
Alignment:
Q  294 agcaataactttatcaccagctttaaaatccttgacttgtggtccaacatctactacctctcctgctacatcagtgcctgaatcaaagt 382  Q
    |||||||||||| || ||| |||| ||||| || ||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||    
T  11564254 agcaataactttgtctccaactttgaaatctttaacttgtgatccaaaatctactacctctcctgctacatcggtgcctgaatcaaagt 11564166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 323 - 379
Target Start/End: Original strand, 11808050 - 11808106
Alignment:
Q  323 ccttgacttgtggtccaacatctactacctctcctgctacatcagtgcctgaatcaa 379  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  11808050 ccttgacttgtggtccaacttctactacctctcctgctacatcagtgcctgaatcaa 11808106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 449 - 493
Target Start/End: Complemental strand, 47119055 - 47119011
Alignment:
Q  449 taaattgttttcatataagctacaagttgttttcatatgctatct 493  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||    
T  47119055 taaattgttttcatataagctataagttgtattcatatgctatct 47119011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 450 - 490
Target Start/End: Original strand, 29778776 - 29778816
Alignment:
Q  450 aaattgttttcatataagctacaagttgttttcatatgcta 490  Q
    ||||||||||||||||||||  |||||||||||||| ||||    
T  29778776 aaattgttttcatataagctgtaagttgttttcataagcta 29778816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 454 - 490
Target Start/End: Complemental strand, 30207656 - 30207620
Alignment:
Q  454 tgttttcatataagctacaagttgttttcatatgcta 490  Q
    ||||||||||||||||| |||||||||||||| ||||    
T  30207656 tgttttcatataagctataagttgttttcataagcta 30207620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 450 - 493
Target Start/End: Complemental strand, 9834878 - 9834835
Alignment:
Q  450 aaattgttttcatataagctacaagttgttttcatatgctatct 493  Q
    ||||||||||||||||||||| |||||||||||||| |||||||    
T  9834878 aaattgttttcatataagctataagttgttttcataagctatct 9834835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 450 - 492
Target Start/End: Original strand, 1561255 - 1561297
Alignment:
Q  450 aaattgttttcatataagctacaagttgttttcatatgctatc 492  Q
    |||||||||| ||||||||||||||||||||||||| ||||||    
T  1561255 aaattgttttaatataagctacaagttgttttcataagctatc 1561297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 450 - 492
Target Start/End: Original strand, 2091742 - 2091784
Alignment:
Q  450 aaattgttttcatataagctacaagttgttttcatatgctatc 492  Q
    |||||||||| ||||||||||||||||||||||||| ||||||    
T  2091742 aaattgttttaatataagctacaagttgttttcataagctatc 2091784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 451 - 491
Target Start/End: Original strand, 7514560 - 7514600
Alignment:
Q  451 aattgttttcatataagctacaagttgttttcatatgctat 491  Q
    |||||||||||||||||||||||| |||||||||| |||||    
T  7514560 aattgttttcatataagctacaagctgttttcataagctat 7514600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 450 - 492
Target Start/End: Original strand, 34770873 - 34770915
Alignment:
Q  450 aaattgttttcatataagctacaagttgttttcatatgctatc 492  Q
    ||||||||||||| ||||||| |||||||||||||| ||||||    
T  34770873 aaattgttttcatttaagctataagttgttttcataagctatc 34770915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 492
Target Start/End: Original strand, 31884576 - 31884617
Alignment:
Q  451 aattgttttcatataagctacaagttgttttcatatgctatc 492  Q
    |||||||||||||||||||| || ||||||||||| ||||||    
T  31884576 aattgttttcatataagctataaattgttttcataagctatc 31884617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 450 - 490
Target Start/End: Original strand, 7645959 - 7645999
Alignment:
Q  450 aaattgttttcatataagctacaagttgttttcatatgcta 490  Q
    ||||||||||||| ||||||| |||||||||||||| ||||    
T  7645959 aaattgttttcatgtaagctataagttgttttcataagcta 7645999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 449 - 493
Target Start/End: Original strand, 24558833 - 24558877
Alignment:
Q  449 taaattgttttcatataagctacaagttgttttcatatgctatct 493  Q
    |||||| ||||| ||||||||| |||||||||||||| |||||||    
T  24558833 taaattattttcgtataagctataagttgttttcataagctatct 24558877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 452 - 492
Target Start/End: Original strand, 41208868 - 41208908
Alignment:
Q  452 attgttttcatataagctacaagttgttttcatatgctatc 492  Q
    ||||||||||||||||||| || ||||||||| ||||||||    
T  41208868 attgttttcatataagctataacttgttttcacatgctatc 41208908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 450 - 493
Target Start/End: Complemental strand, 25006123 - 25006080
Alignment:
Q  450 aaattgttttcatataagctacaagttgttttcatatgctatct 493  Q
    ||||||||||||||||||||| |||||||||||||| |||||||    
T  25006123 aaattgttttcatataagctataagttgttttcataagctatct 25006080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 450 - 490
Target Start/End: Complemental strand, 28467396 - 28467356
Alignment:
Q  450 aaattgttttcatataagctacaagttgttttcatatgcta 490  Q
    ||||| |||||||||||||||||||||||||||||| ||||    
T  28467396 aaattattttcatataagctacaagttgttttcataagcta 28467356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 450 - 485
Target Start/End: Complemental strand, 7218163 - 7218128
Alignment:
Q  450 aaattgttttcatataagctacaagttgttttcata 485  Q
    ||||||||||||||||||||| ||||||||||||||    
T  7218163 aaattgttttcatataagctataagttgttttcata 7218128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 454 - 493
Target Start/End: Complemental strand, 12564959 - 12564920
Alignment:
Q  454 tgttttcatataagctacaagttgttttcatatgctatct 493  Q
    ||||||||||||||||| |||||||||||||| |||||||    
T  12564959 tgttttcatataagctataagttgttttcataagctatct 12564920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 457 - 492
Target Start/End: Complemental strand, 17423020 - 17422985
Alignment:
Q  457 tttcatataagctacaagttgttttcatatgctatc 492  Q
    |||||||||||||| |||||||||||||||||||||    
T  17423020 tttcatataagctataagttgttttcatatgctatc 17422985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 453 - 492
Target Start/End: Complemental strand, 25005883 - 25005844
Alignment:
Q  453 ttgttttcatataagctacaagttgttttcatatgctatc 492  Q
    |||||||||||||||||| |||||||||||||| ||||||    
T  25005883 ttgttttcatataagctataagttgttttcataagctatc 25005844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 450 - 485
Target Start/End: Original strand, 30371129 - 30371164
Alignment:
Q  450 aaattgttttcatataagctacaagttgttttcata 485  Q
    ||||||||||||||||||||| ||||||||||||||    
T  30371129 aaattgttttcatataagctataagttgttttcata 30371164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 450 - 492
Target Start/End: Original strand, 17269231 - 17269273
Alignment:
Q  450 aaattgttttcatataagctacaagttgttttcatatgctatc 492  Q
    ||||||||||||||||||| | |||||||||||||| ||||||    
T  17269231 aaattgttttcatataagcaataagttgttttcataagctatc 17269273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 491
Target Start/End: Complemental strand, 27738269 - 27738228
Alignment:
Q  450 aaattgttttcatataagctacaagttgttttcatatgctat 491  Q
    ||||||||||||||||||||| || ||||||||||| |||||    
T  27738269 aaattgttttcatataagctataatttgttttcataagctat 27738228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 450 - 492
Target Start/End: Original strand, 11513879 - 11513921
Alignment:
Q  450 aaattgttttcatataagctacaagttgttttcatatgctatc 492  Q
    ||||||||||||||||||||| |||||||||||||| ||||||    
T  11513879 aaattgttttcatataagctataagttgttttcataagctatc 11513921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 449 - 493
Target Start/End: Original strand, 18066108 - 18066152
Alignment:
Q  449 taaattgttttcatataagctacaagttgttttcatatgctatct 493  Q
    |||||||||||||||||||||| ||| |||||||||| |||||||    
T  18066108 taaattgttttcatataagctataagctgttttcataagctatct 18066152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 450 - 493
Target Start/End: Original strand, 25800810 - 25800853
Alignment:
Q  450 aaattgttttcatataagctacaagttgttttcatatgctatct 493  Q
    ||||||||||||||||||||| ||| |||||||||| |||||||    
T  25800810 aaattgttttcatataagctataagctgttttcataagctatct 25800853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 454 - 492
Target Start/End: Complemental strand, 5043645 - 5043607
Alignment:
Q  454 tgttttcatataagctacaagttgttttcatatgctatc 492  Q
    ||||||||||||||||| |||||||||||||| ||||||    
T  5043645 tgttttcatataagctagaagttgttttcataagctatc 5043607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 449 - 493
Target Start/End: Original strand, 1625880 - 1625924
Alignment:
Q  449 taaattgttttcatataagctacaagttgttttcatatgctatct 493  Q
    |||||||||||| |||||| || |||||||||||||| |||||||    
T  1625880 taaattgttttcgtataagttataagttgttttcataagctatct 1625924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 456 - 492
Target Start/End: Complemental strand, 17952784 - 17952748
Alignment:
Q  456 ttttcatataagctacaagttgttttcatatgctatc 492  Q
    ||||||||||||||||||| |||||||||| ||||||    
T  17952784 ttttcatataagctacaagatgttttcataagctatc 17952748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 449 - 493
Target Start/End: Original strand, 26626853 - 26626897
Alignment:
Q  449 taaattgttttcatataagctacaagttgttttcatatgctatct 493  Q
    |||||||||||| ||||||||| ||| |||||||||| |||||||    
T  26626853 taaattgttttcgtataagctagaagctgttttcataagctatct 26626897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 456 - 492
Target Start/End: Original strand, 39983329 - 39983365
Alignment:
Q  456 ttttcatataagctacaagttgttttcatatgctatc 492  Q
    ||||||||||||||| |||||||||||||| ||||||    
T  39983329 ttttcatataagctataagttgttttcataagctatc 39983365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 450 - 493
Target Start/End: Complemental strand, 18516338 - 18516295
Alignment:
Q  450 aaattgttttcatataagctacaagttgttttcatatgctatct 493  Q
    ||||||| ||||||||||||| ||||||||| ||||||||||||    
T  18516338 aaattgtgttcatataagctataagttgtttccatatgctatct 18516295  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 450 - 492
Target Start/End: Complemental strand, 47046197 - 47046155
Alignment:
Q  450 aaattgttttcatataagctacaagttgttttcatatgctatc 492  Q
    |||||||||||||||||||| | ||||||||||||| ||||||    
T  47046197 aaattgttttcatataagctccgagttgttttcataagctatc 47046155  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 450 - 490
Target Start/End: Original strand, 1417245 - 1417285
Alignment:
Q  450 aaattgttttcatataagctacaagttgttttcatatgcta 490  Q
    ||||||||||||||||||| | |||||||||||||| ||||    
T  1417245 aaattgttttcatataagcaataagttgttttcataagcta 1417285  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 449 - 493
Target Start/End: Original strand, 47177616 - 47177660
Alignment:
Q  449 taaattgttttcatataagctacaagttgttttcatatgctatct 493  Q
    |||||||||||||||||||||| ||| |||||||| | |||||||    
T  47177616 taaattgttttcatataagctataagctgttttcaaaagctatct 47177660  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 450 - 492
Target Start/End: Original strand, 4006695 - 4006737
Alignment:
Q  450 aaattgttttcatataagctacaagttgttttcatatgctatc 492  Q
    |||||||||| |||||||||| |||||||||||||| ||||||    
T  4006695 aaattgtttttatataagctataagttgttttcataagctatc 4006737  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 451 - 485
Target Start/End: Complemental strand, 9668073 - 9668039
Alignment:
Q  451 aattgttttcatataagctacaagttgttttcata 485  Q
    ||||||||||||||||||||||| |||||||||||    
T  9668073 aattgttttcatataagctacaatttgttttcata 9668039  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 450 - 486
Target Start/End: Original strand, 5550113 - 5550149
Alignment:
Q  450 aaattgttttcatataagctacaagttgttttcatat 486  Q
    ||||||||||||||||||||| ||| |||||||||||    
T  5550113 aaattgttttcatataagctataagctgttttcatat 5550149  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 449 - 485
Target Start/End: Complemental strand, 7485158 - 7485122
Alignment:
Q  449 taaattgttttcatataagctacaagttgttttcata 485  Q
    |||||| ||||||||||||||| ||||||||||||||    
T  7485158 taaatttttttcatataagctataagttgttttcata 7485122  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 456 - 492
Target Start/End: Original strand, 32917205 - 32917241
Alignment:
Q  456 ttttcatataagctacaagttgttttcatatgctatc 492  Q
    ||||||||||||||| ||||||||||||| |||||||    
T  32917205 ttttcatataagctataagttgttttcatctgctatc 32917241  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 453 - 491
Target Start/End: Original strand, 41057022 - 41057060
Alignment:
Q  453 ttgttttcatataagctacaagttgttttcatatgctat 491  Q
    |||||||||||||||||| |||||||||||||| |||||    
T  41057022 ttgttttcatataagctataagttgttttcataagctat 41057060  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 485
Target Start/End: Complemental strand, 10132809 - 10132772
Alignment:
Q  448 ataaattgttttcatataagctacaagttgttttcata 485  Q
    |||||||||||| ||||||| |||||||||||||||||    
T  10132809 ataaattgtttttatataagatacaagttgttttcata 10132772  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 447 - 492
Target Start/End: Complemental strand, 22214751 - 22214706
Alignment:
Q  447 tataaattgttttcatataagctacaagttgttttcatatgctatc 492  Q
    ||||| |||||||||||||| ||| |||||||||||||| ||||||    
T  22214751 tataagttgttttcatataacctataagttgttttcataagctatc 22214706  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 454 - 491
Target Start/End: Original strand, 28306143 - 28306180
Alignment:
Q  454 tgttttcatataagctacaagttgttttcatatgctat 491  Q
    |||||||||||||| ||||||||||||||||| |||||    
T  28306143 tgttttcatataagttacaagttgttttcataagctat 28306180  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 449 - 485
Target Start/End: Complemental strand, 10101566 - 10101530
Alignment:
Q  449 taaattgttttcatataagctacaagttgttttcata 485  Q
    ||||||||||||||||||| || ||||||||||||||    
T  10101566 taaattgttttcatataagataaaagttgttttcata 10101530  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 449 - 485
Target Start/End: Complemental strand, 10212491 - 10212455
Alignment:
Q  449 taaattgttttcatataagctacaagttgttttcata 485  Q
    ||||||||||||||||||| || ||||||||||||||    
T  10212491 taaattgttttcatataagataaaagttgttttcata 10212455  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 449 - 485
Target Start/End: Original strand, 10357413 - 10357449
Alignment:
Q  449 taaattgttttcatataagctacaagttgttttcata 485  Q
    |||||| |||||||||||| |||||||||||||||||    
T  10357413 taaatttttttcatataagatacaagttgttttcata 10357449  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 453 - 493
Target Start/End: Complemental strand, 33405253 - 33405213
Alignment:
Q  453 ttgttttcatataagctacaagttgttttcatatgctatct 493  Q
    |||||||||||||||||| ||| |||||||||| |||||||    
T  33405253 ttgttttcatataagctataagctgttttcataagctatct 33405213  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 449 - 493
Target Start/End: Complemental strand, 44061113 - 44061069
Alignment:
Q  449 taaattgttttcatataagctacaagttgttttcatatgctatct 493  Q
    |||||||||||  ||||||||| |||||||||||||||| |||||    
T  44061113 taaattgtttttctataagctataagttgttttcatatgatatct 44061069  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 450 - 486
Target Start/End: Complemental strand, 51197825 - 51197789
Alignment:
Q  450 aaattgttttcatataagctacaagttgttttcatat 486  Q
    |||||||||||||||||| || |||||||||||||||    
T  51197825 aaattgttttcatataagttataagttgttttcatat 51197789  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 491
Target Start/End: Complemental strand, 19138808 - 19138767
Alignment:
Q  450 aaattgttttcatataagctacaagttgttttcatatgctat 491  Q
    |||||||||||| |||||||| |||||||||||||| |||||    
T  19138808 aaattgttttcagataagctataagttgttttcataagctat 19138767  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 451 - 491
Target Start/End: Complemental strand, 6587195 - 6587155
Alignment:
Q  451 aattgttttcatataagctacaagttgttttcatatgctat 491  Q
    |||||||||| ||||||||| |||||||||||||| |||||    
T  6587195 aattgttttcgtataagctataagttgttttcataagctat 6587155  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 457 - 485
Target Start/End: Complemental strand, 9703322 - 9703294
Alignment:
Q  457 tttcatataagctacaagttgttttcata 485  Q
    |||||||||||||||||||||||||||||    
T  9703322 tttcatataagctacaagttgttttcata 9703294  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 457 - 485
Target Start/End: Complemental strand, 39823203 - 39823175
Alignment:
Q  457 tttcatataagctacaagttgttttcata 485  Q
    |||||||||||||||||||||||||||||    
T  39823203 tttcatataagctacaagttgttttcata 39823175  T

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