View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21256_low_9 (Length: 491)

Name: NF21256_low_9
Description: NF21256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21256_low_9
NF21256_low_9
[»] chr5 (13 HSPs)
chr5 (1-450)||(42309466-42309928)
chr5 (349-475)||(5887238-5887365)
chr5 (349-475)||(538258-538386)
chr5 (360-475)||(42927130-42927246)
chr5 (342-475)||(28750451-28750586)
chr5 (360-475)||(42428244-42428361)
chr5 (342-475)||(8565744-8565881)
chr5 (349-475)||(31183211-31183338)
chr5 (360-475)||(13239989-13240105)
chr5 (359-475)||(30682735-30682854)
chr5 (387-475)||(42426077-42426166)
chr5 (349-447)||(534025-534124)
chr5 (368-475)||(32637061-32637169)
[»] chr2 (21 HSPs)
chr2 (349-468)||(2334221-2334341)
chr2 (349-475)||(14633631-14633758)
chr2 (344-475)||(33162252-33162385)
chr2 (349-475)||(723550-723677)
chr2 (349-475)||(34139576-34139703)
chr2 (349-475)||(42362583-42362710)
chr2 (344-475)||(24885823-24885955)
chr2 (349-475)||(36987878-36988006)
chr2 (359-441)||(38312513-38312595)
chr2 (387-475)||(11067538-11067627)
chr2 (387-475)||(39285072-39285161)
chr2 (349-475)||(6594807-6594935)
chr2 (363-475)||(11049787-11049895)
chr2 (342-470)||(36773800-36773930)
chr2 (396-453)||(26353431-26353488)
chr2 (368-475)||(29868106-29868214)
chr2 (349-475)||(36317816-36317944)
chr2 (388-475)||(12123434-12123521)
chr2 (256-309)||(2419951-2420005)
chr2 (349-438)||(17057172-17057261)
chr2 (349-438)||(17085155-17085244)
[»] chr8 (18 HSPs)
chr8 (349-473)||(12702434-12702562)
chr8 (349-475)||(41366421-41366548)
chr8 (349-475)||(30143577-30143705)
chr8 (359-470)||(43036665-43036778)
chr8 (349-475)||(1345179-1345306)
chr8 (349-475)||(6599206-6599330)
chr8 (349-475)||(6674659-6674783)
chr8 (349-475)||(40321313-40321439)
chr8 (368-475)||(3303493-3303601)
chr8 (349-447)||(5689533-5689632)
chr8 (351-475)||(18105881-18106006)
chr8 (360-475)||(4731895-4732012)
chr8 (361-475)||(44304092-44304208)
chr8 (361-470)||(8154024-8154132)
chr8 (427-474)||(3051009-3051057)
chr8 (360-475)||(8965506-8965619)
chr8 (374-475)||(10015312-10015414)
chr8 (388-444)||(4743070-4743126)
[»] chr7 (21 HSPs)
chr7 (344-453)||(23344226-23344334)
chr7 (368-475)||(1113890-1113998)
chr7 (349-475)||(19502416-19502544)
chr7 (349-475)||(23564874-23564996)
chr7 (368-475)||(47675959-47676067)
chr7 (349-475)||(14069636-14069764)
chr7 (349-475)||(14379664-14379792)
chr7 (368-475)||(41317261-41317369)
chr7 (349-475)||(36146215-36146343)
chr7 (359-469)||(8153581-8153692)
chr7 (349-475)||(23555278-23555407)
chr7 (360-475)||(25616092-25616209)
chr7 (341-475)||(38671020-38671155)
chr7 (349-444)||(41648817-41648912)
chr7 (346-475)||(495788-495918)
chr7 (402-475)||(30024613-30024687)
chr7 (386-475)||(4253375-4253464)
chr7 (387-475)||(31105241-31105327)
chr7 (368-475)||(47673767-47673875)
chr7 (349-475)||(48489668-48489796)
chr7 (349-475)||(24525309-24525437)
[»] chr3 (18 HSPs)
chr3 (349-475)||(51351944-51352069)
chr3 (359-475)||(44700297-44700414)
chr3 (384-475)||(21350849-21350938)
chr3 (349-475)||(22834810-22834937)
chr3 (343-475)||(9666267-9666401)
chr3 (349-470)||(27305522-27305641)
chr3 (359-444)||(16499284-16499369)
chr3 (368-475)||(23410154-23410262)
chr3 (359-438)||(9581559-9581638)
chr3 (361-475)||(9635939-9636055)
chr3 (368-468)||(29196212-29196314)
chr3 (363-469)||(45095406-45095514)
chr3 (359-475)||(31314678-31314795)
chr3 (349-441)||(2074886-2074977)
chr3 (368-475)||(23391735-23391843)
chr3 (368-475)||(39153187-39153295)
chr3 (361-435)||(40734776-40734850)
chr3 (387-444)||(32891360-32891417)
[»] chr1 (28 HSPs)
chr1 (360-475)||(50166994-50167110)
chr1 (349-453)||(927788-927890)
chr1 (349-468)||(833973-834093)
chr1 (349-468)||(16455861-16455981)
chr1 (349-475)||(1833746-1833873)
chr1 (349-475)||(40122004-40122131)
chr1 (349-475)||(8550587-8550715)
chr1 (359-475)||(13137793-13137911)
chr1 (344-475)||(45644156-45644289)
chr1 (349-475)||(28223224-28223352)
chr1 (349-444)||(13659154-13659249)
chr1 (349-475)||(23555074-23555201)
chr1 (343-469)||(46065156-46065281)
chr1 (352-452)||(8870533-8870634)
chr1 (359-475)||(28265372-28265489)
chr1 (353-438)||(49918626-49918711)
chr1 (363-475)||(50169032-50169145)
chr1 (360-475)||(196724-196840)
chr1 (350-454)||(3189604-3189708)
chr1 (350-454)||(3198421-3198525)
chr1 (350-454)||(3207260-3207364)
chr1 (368-475)||(4552471-4552579)
chr1 (374-438)||(36683885-36683949)
chr1 (349-447)||(3846924-3847022)
chr1 (349-475)||(10925459-10925587)
chr1 (386-449)||(15820561-15820624)
chr1 (360-469)||(30476260-30476371)
chr1 (349-475)||(28220029-28220157)
[»] chr4 (21 HSPs)
chr4 (346-475)||(47038216-47038346)
chr4 (349-475)||(52467160-52467289)
chr4 (387-470)||(6542028-6542109)
chr4 (349-444)||(48893446-48893541)
chr4 (359-475)||(5872055-5872170)
chr4 (349-466)||(36463199-36463317)
chr4 (349-475)||(12743731-12743856)
chr4 (349-475)||(26175439-26175567)
chr4 (349-475)||(45686990-45687117)
chr4 (359-475)||(48143285-48143403)
chr4 (366-470)||(31474389-31474494)
chr4 (387-475)||(46147237-46147326)
chr4 (349-438)||(56178439-56178528)
chr4 (360-444)||(24969933-24970016)
chr4 (387-453)||(4588212-4588278)
chr4 (403-453)||(51338331-51338381)
chr4 (361-422)||(29999644-29999705)
chr4 (349-438)||(52082466-52082555)
chr4 (349-438)||(54199711-54199800)
chr4 (362-422)||(34570230-34570290)
chr4 (424-475)||(36994756-36994808)
[»] scaffold0006 (1 HSPs)
scaffold0006 (349-444)||(148915-149010)
[»] chr6 (7 HSPs)
chr6 (361-475)||(28137226-28137341)
chr6 (361-475)||(5408885-5409001)
chr6 (361-475)||(5413210-5413326)
chr6 (410-475)||(14521546-14521612)
chr6 (343-475)||(26954088-26954221)
chr6 (364-475)||(33160169-33160281)
chr6 (374-475)||(9182859-9182962)


Alignment Details
Target: chr5 (Bit Score: 365; Significance: 0; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 450
Target Start/End: Original strand, 42309466 - 42309928
Alignment:
Q  1 attgcatacaacaaggtcatgggaatttcttggagtagaaagaaatgaaataattcctaaggaatccatttgggagaaggcaagatatggtgaagacaca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42309466 attgcatacaacaaggtcatgggaatttcttggagtagaaagaaatgaaataattcctaaggaatccatttgggagaaggcaagatatggtgaagacaca 42309565  T
Q  101 atcattggtaaccttgatacaggtatataagtttcatatattttcacagtcagagttaatctatgttcctttcctttgacaagtgttagtttctatgatg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||  |     
T  42309566 atcattggtaaccttgatacaggtatataagtttcatatattttcacagtcagagtcaaactatgttcctttcctttgacaagtgttagtttctatttta 42309665  T
Q  201 ---------aat---aaatcgtaaaagattggttaatttagtcctcagatttgtaaaaagtaacaacttagtctcttaaattgaaaa-tatcaatcaatt 287  Q
             |||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  42309666 gttattaaaaatttaaaatcgtaaaagattggttaatttagtcctcagatttgtaaaaagtaacaacttagtctcttaaattgaaaaatatcaatcaatt 42309765  T
Q  288 tagtgatttcttcaaattttgccaaagaatttaaaaggttttacgcttgattagatagtgctgtgaattaagactcaaaatcacatcaataaaaacaaag 387  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  42309766 tagtgatttcttcaaattttgccacagaatttaaaaggttttacgcttgattagatagtgctgtgaattaggactcaaaatcacatcaatgaaaacaaag 42309865  T
Q  388 atgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataacaa 450  Q
    |||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  42309866 atgtatgcagcaaaggaaagtgataacctatatcatagtaatcacaagcaacaacaataacaa 42309928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 349 - 475
Target Start/End: Original strand, 5887238 - 5887365
Alignment:
Q  349 tgtgaattaagactcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataac 448  Q
    ||||||||  |||||||||||||| ||||| |||| | ||| |||| ||||| ||||||| |||||| |||||| ||| | ||||||||||||||||||     
T  5887238 tgtgaattcggactcaaaatcacaccaatacaaactatgatatgtggagcaaaggaaagtagtaaccaatatcaaagtgaacacaagcaacaacaataat 5887337  T
Q  449 aa-aacacatagatctaatctagaaatc 475  Q
    || ||||| || ||||||||||| ||||    
T  5887338 aacaacacctaaatctaatctagtaatc 5887365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 349 - 475
Target Start/End: Complemental strand, 538386 - 538258
Alignment:
Q  349 tgtgaattaagactcaaaa-tcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataa 447  Q
    |||||||| |||||||||| ||||| ||||| |||| | |||||||| ||||| |||||||  ||||| || ||| ||||| ||||||||||||||||||    
T  538386 tgtgaattcagactcaaaactcacaccaatataaactatgatgtgtggagcaaaggaaagtaataaccaatttcaaagtaaacacaagcaacaacaataa 538287  T
Q  448 caa-aacacatagatctaatctagaaatc 475  Q
     || ||||  |||||||||||||| ||||    
T  538286 taacaacatctagatctaatctagtaatc 538258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 360 - 475
Target Start/End: Complemental strand, 42927246 - 42927130
Alignment:
Q  360 actcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataacaa-aacacata 458  Q
    ||||||||||| | |||  |||||||||||||||| ||||| ||||||| | |||  |||||| ||||| ||||||||||||||| || || ||||| ||    
T  42927246 actcaaaatcataccaacgaaaacaaagatgtgtggagcaaaggaaagtagcaactaatatcaaagtaaacacaagcaacaacaacaataacaacaccta 42927147  T
Q  459 gatctaatctagaaatc 475  Q
    |||||||||||| ||||    
T  42927146 gatctaatctaggaatc 42927130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 342 - 475
Target Start/End: Original strand, 28750451 - 28750586
Alignment:
Q  342 atagtgctgtgaattaagactcaaaa-tcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaaca 440  Q
    |||||| ||||||||  ||||||||| ||||| ||||| |||  | |||||||| ||||| ||||||| |||||| || | | ||||| |||||||||||    
T  28750451 atagtgttgtgaatttggactcaaaactcacaccaatacaaattatgatgtgtggagcaaaggaaagtagtaaccaattttaaagtaaacacaagcaaca 28750550  T
Q  441 acaataacaa-aacacatagatctaatctagaaatc 475  Q
    ||||||| || ||||| |||||||||||||| ||||    
T  28750551 acaataataacaacacctagatctaatctagtaatc 28750586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 360 - 475
Target Start/End: Original strand, 42428244 - 42428361
Alignment:
Q  360 actcaaaa-tcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataacaa-aacacat 457  Q
    |||||||| ||||| ||||| |||| | |||||||| ||||| ||||||| |||||| |||||| ||| | |||||||||||| ||||| || ||||| |    
T  42428244 actcaaaactcacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaaccaatatcaaagtgaacacaagcaacaataataataacaacacct 42428343  T
Q  458 agatctaatctagaaatc 475  Q
    ||||||||||||| ||||    
T  42428344 agatctaatctagtaatc 42428361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 342 - 475
Target Start/End: Original strand, 8565744 - 8565881
Alignment:
Q  342 atagtgctgtgaattaagactcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaa 441  Q
    |||||| ||||||||  || |||||||||||  |||| |||| | |||||||| ||||| ||||||| |||||| ||| || ||| | ||||||||||||    
T  8565744 atagtgttgtgaatttggattcaaaatcacactaatataaactatgatgtgtggagcaaaggaaagtagtaaccaataacaaagtgaacacaagcaacaa 8565843  T
Q  442 caataacaa----aacacatagatctaatctagaaatc 475  Q
    |||||| ||    ||||| |||||||||||||| ||||    
T  8565844 caataataataacaacacctagatctaatctagtaatc 8565881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 349 - 475
Target Start/End: Complemental strand, 31183338 - 31183211
Alignment:
Q  349 tgtgaattaagactcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataac 448  Q
    ||||||||  |||||||||||||| ||||| |||| | |||||||| ||||| ||||||| |||||  |||||| ||  | |||||||||||| |||||     
T  31183338 tgtgaattcggactcaaaatcacaccaatacaaaccatgatgtgtggagcaaaggaaagtagtaactaatatcaaagggaacacaagcaacaaaaataat 31183239  T
Q  449 aa-aacacatagatctaatctagaaatc 475  Q
    || ||||| || ||||||||||| ||||    
T  31183238 aacaacacctatatctaatctagtaatc 31183211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 360 - 475
Target Start/End: Complemental strand, 13240105 - 13239989
Alignment:
Q  360 actcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataacaa-aacacata 458  Q
    |||||||||||||  |||| |||| | |||||||| || || ||||||| |||||| || | | ||||| ||||||||||||||| || || ||||| ||    
T  13240105 actcaaaatcacactaatacaaactatgatgtgtggagtaaaggaaagtagtaaccaattttaaagtaaacacaagcaacaacaacaataacaacaccta 13240006  T
Q  459 gatctaatctagaaatc 475  Q
    |||||||||||| ||||    
T  13240005 gatctaatctagtaatc 13239989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 359 - 475
Target Start/End: Original strand, 30682735 - 30682854
Alignment:
Q  359 gactcaaaa-tcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaa----caacaataacaaaac 453  Q
    ||||||||| ||||| ||||| |||| | |||||||| ||||| ||||||| |||||| |||||| ||| | |||||||||    ||||||||||||  |    
T  30682735 gactcaaaactcacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaaccaatatcaaagtgaacacaagcaataatcaacaataacaa--c 30682832  T
Q  454 acatagatctaatctagaaatc 475  Q
    || |||||||||||||| ||||    
T  30682833 acctagatctaatctaggaatc 30682854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 387 - 475
Target Start/End: Original strand, 42426077 - 42426166
Alignment:
Q  387 gatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataacaa-aacacatagatctaatctagaaatc 475  Q
    |||||||| |||||  |||||| |||||| |||||| ||| | ||||||||||| |||||| || ||||| |||||||||||||| ||||    
T  42426077 gatgtgtggagcaaaagaaagtagtaaccaatatcaaagtgaacacaagcaacatcaataataacaacacctagatctaatctagtaatc 42426166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 349 - 447
Target Start/End: Complemental strand, 534124 - 534025
Alignment:
Q  349 tgtgaattaagactcaaaa-tcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataa 447  Q
    ||||||||  ||||||||| ||||| ||||| |||| | |||||||| ||||| ||||||| |||||| || ||| ||||  |||||||||||| |||||    
T  534124 tgtgaattcggactcaaaactcacaccaatagaaactatgatgtgtggagcaaaggaaagtagtaaccaatttcaaagtagacacaagcaacaataataa 534025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 368 - 475
Target Start/End: Complemental strand, 32637169 - 32637061
Alignment:
Q  368 tcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataacaa-aacacatagatctaat 466  Q
    ||||| ||||| |||| | |||||||| || || ||||||| |||||  || ||| | ||| ||||||||||| |||||| || ||||| ||||||||||    
T  32637169 tcacaccaatacaaactatgatgtgtggagtaaaggaaagtagtaacaaatttcacactaaacacaagcaacatcaataataacaacacctagatctaat 32637070  T
Q  467 ctagaaatc 475  Q
    |||| ||||    
T  32637069 ctagtaatc 32637061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 349 - 468
Target Start/End: Original strand, 2334221 - 2334341
Alignment:
Q  349 tgtgaattaagactcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataac 448  Q
    |||||||| ||||||||||||||| ||||| |||| | |||||||| ||||| ||||||| |||||| || ||| ||||| ||||||||||||||||||     
T  2334221 tgtgaattcagactcaaaatcacaccaatacaaactatgatgtgtgaagcaaaggaaagtagtaaccaatttcaaagtaaacacaagcaacaacaataat 2334320  T
Q  449 aa-aacacatagatctaatct 468  Q
    || ||||| ||||||||||||    
T  2334321 aacaacacctagatctaatct 2334341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 349 - 475
Target Start/End: Original strand, 14633631 - 14633758
Alignment:
Q  349 tgtgaattaagactcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataac 448  Q
    ||||| || ||||||||||||||| ||||| |||| | |||||||| ||||| ||||||| |||||| |||||| ||| | ||||||||||||||||||     
T  14633631 tgtgatttcagactcaaaatcacaccaatacaaactatgatgtgtgaagcaaaggaaagtagtaaccaatatcaaagtgaacacaagcaacaacaataat 14633730  T
Q  449 aa-aacacatagatctaatctagaaatc 475  Q
    || ||||| |||||||||||||| ||||    
T  14633731 aacaacacctagatctaatctagtaatc 14633758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 344 - 475
Target Start/End: Original strand, 33162252 - 33162385
Alignment:
Q  344 agtgctgtgaattaagactcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatc-acaagcaacaac 442  Q
    |||| ||||||||  |||||||||||||||||||| |||| | |||||||| ||||| ||||||| |||||| |||||| || || | ||||||||||||    
T  33162252 agtgttgtgaattcggactcaaaatcacatcaatacaaactatgatgtgtggagcaaaggaaagtagtaaccaatatcaaagcaaacaacaagcaacaac 33162351  T
Q  443 aataacaa-aacacatagatctaatctagaaatc 475  Q
    ||||| || ||||| |||||||||||||| ||||    
T  33162352 aataataacaacacctagatctaatctagtaatc 33162385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 349 - 475
Target Start/End: Original strand, 723550 - 723677
Alignment:
Q  349 tgtgaattaagactcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataac 448  Q
    ||||||||  |||||||||||||| ||||| |||| | |||||||| ||||| ||||||| |||||| |||||| ||| | ||||| ||||||||||||     
T  723550 tgtgaattcggactcaaaatcacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaaccaatatcaaagtgaacacaatcaacaacaataat 723649  T
Q  449 aa-aacacatagatctaatctagaaatc 475  Q
    || ||||| |||||||||||||| ||||    
T  723650 aacaacacctagatctaatctagtaatc 723677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 349 - 475
Target Start/End: Original strand, 34139576 - 34139703
Alignment:
Q  349 tgtgaattaagactcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataac 448  Q
    ||||||||  |||||||||||||| ||||| |||| | |||||||| ||||| ||||||| |||||| |||||| ||| | ||||||||||||||||||     
T  34139576 tgtgaattcggactcaaaatcacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaaccaatatcaaagtgaacacaagcaacaacaataat 34139675  T
Q  449 aa-aacacatagatctaatctagaaatc 475  Q
    || || || |||||||||||||| ||||    
T  34139676 aacaagacctagatctaatctagtaatc 34139703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 349 - 475
Target Start/End: Complemental strand, 42362710 - 42362583
Alignment:
Q  349 tgtgaattaagactcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataac 448  Q
    ||||||||  |||||||||||||| ||||| |||| | |||||||| ||||| ||||||| |||||| | |||| ||| | | ||||||||||||||||     
T  42362710 tgtgaattcggactcaaaatcacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaaccaaaatcaaagtgaactcaagcaacaacaataat 42362611  T
Q  449 aa-aacacatagatctaatctagaaatc 475  Q
    || ||||| |||||||||||||| ||||    
T  42362610 aacaacacctagatctaatctagtaatc 42362583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 344 - 475
Target Start/End: Complemental strand, 24885955 - 24885823
Alignment:
Q  344 agtgctgtgaattaagactcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaaca 443  Q
    |||| ||||||||  |||||||||||||| ||||| |||| | |||||||| ||||| ||||| | |||||| |||||| ||| | |||||| |||||||    
T  24885955 agtgttgtgaattcggactcaaaatcacaccaatacaaactatgatgtgtgtagcaaaggaaaatagtaaccaatatcaaagtgaacacaagaaacaaca 24885856  T
Q  444 ataacaa-aacacatagatctaatctagaaatc 475  Q
    || | || ||||| |||||||||||||| ||||    
T  24885855 atgataacaacacctagatctaatctagtaatc 24885823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 349 - 475
Target Start/End: Original strand, 36987878 - 36988006
Alignment:
Q  349 tgtgaattaagactcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaa----caacaa 444  Q
    ||||||||  |||||||||||||| ||||| |||| | |||||||| ||||| ||||||| |||||| || ||| ||||| |||||||||    ||||||    
T  36987878 tgtgaattcggactcaaaatcacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaaccaatttcaaagtaaacacaagcaataatcaacaa 36987977  T
Q  445 taacaaaacacatagatctaatctagaaatc 475  Q
    ||||  ||||| |||||||||||||| ||||    
T  36987978 taac--aacacctagatctaatctaggaatc 36988006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 359 - 441
Target Start/End: Complemental strand, 38312595 - 38312513
Alignment:
Q  359 gactcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaa 441  Q
    |||||||||||||| ||||| |||||| |||||||| ||||| ||||||| |||||| |||||| ||| | ||||||||||||    
T  38312595 gactcaaaatcacaccaatataaacaatgatgtgtggagcaaaggaaagtagtaaccaatatcaaagtgaacacaagcaacaa 38312513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 387 - 475
Target Start/End: Complemental strand, 11067627 - 11067538
Alignment:
Q  387 gatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataacaa-aacacatagatctaatctagaaatc 475  Q
    |||||||| ||||| ||||||| |||||| |||||| ||| | |||||||||||||||||| || ||||| |||||||||||||| ||||    
T  11067627 gatgtgtggagcaaaggaaagtagtaaccaatatcaaagtgaacacaagcaacaacaataataacaacacctagatctaatctagtaatc 11067538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 387 - 475
Target Start/End: Complemental strand, 39285161 - 39285072
Alignment:
Q  387 gatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataacaa-aacacatagatctaatctagaaatc 475  Q
    |||||||| ||||| | ||||| |||||| || ||| ||||| |||||||||||||||||| || ||||| |||||||||||||| ||||    
T  39285161 gatgtgtggagcaaagaaaagtagtaaccaatttcaaagtaaacacaagcaacaacaataataacaacacctagatctaatctagtaatc 39285072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 349 - 475
Target Start/End: Original strand, 6594807 - 6594935
Alignment:
Q  349 tgtgaattaagactcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaa----caacaa 444  Q
    ||||||||  |||||||||||||| ||||| |||| | |||||||| ||||| | ||||| |||||| |||||| ||| | |||||| ||    ||||||    
T  6594807 tgtgaatttggactcaaaatcacaccaatacaaactatgatgtgtggagcaaagtaaagtagtaaccaatatcaaagtgaacacaagtaataatcaacaa 6594906  T
Q  445 taacaaaacacatagatctaatctagaaatc 475  Q
    ||||  | ||| |||||||||||||||||||    
T  6594907 taac--agcacctagatctaatctagaaatc 6594935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 363 - 475
Target Start/End: Complemental strand, 11049895 - 11049787
Alignment:
Q  363 caaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataacaaaacacatagatc 462  Q
    |||||||||| |||||||| | | |||| ||| |||||  |||||| |||||| |||||| |||||||| ||||||||||||||| ||   || ||||||    
T  11049895 caaaatcacaccaataaaa-ctatgatgcgtggagcaaaagaaagtagtaaccaatatcaaagtaatcataagcaacaacaataataa---acctagatc 11049800  T
Q  463 taatctagaaatc 475  Q
    |||||||| ||||    
T  11049799 taatctaggaatc 11049787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 342 - 470
Target Start/End: Complemental strand, 36773930 - 36773800
Alignment:
Q  342 atagtgctgtgaattaagactcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatag-taatcacaagcaaca 440  Q
    |||||| ||||||||  || ||||||||||| ||||| |||| | |||||||| |||||  |||||| |||||| |||||| ||  ||  | ||||||||    
T  36773930 atagtgttgtgaattcggattcaaaatcacaccaatacaaactatgatgtgtggagcaaatgaaagtagtaaccaatatcaaagccaacaagaagcaaca 36773831  T
Q  441 acaataacaa-aacacatagatctaatctag 470  Q
    ||||||| || ||||| ||||||||||||||    
T  36773830 acaataataacaacacctagatctaatctag 36773800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 396 - 453
Target Start/End: Complemental strand, 26353488 - 26353431
Alignment:
Q  396 agcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataacaaaac 453  Q
    ||||| ||||||| |||||| |||| | |||||||||||| |||||||||||||||||    
T  26353488 agcaaaggaaagtagtaaccaatattaaagtaatcacaaggaacaacaataacaaaac 26353431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 368 - 475
Target Start/End: Complemental strand, 29868214 - 29868106
Alignment:
Q  368 tcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataacaa-aacacatagatctaat 466  Q
    ||||| ||||| |||| | |||||||| ||||| | ||||| |||| | || | | ||||| |||||||||||||||||| || ||||| ||||||||||    
T  29868214 tcacagcaatacaaactatgatgtgtggagcaaagaaaagtagtaatcaattttaaagtaaacacaagcaacaacaataataacaacacctagatctaat 29868115  T
Q  467 ctagaaatc 475  Q
    |||| ||||    
T  29868114 ctagtaatc 29868106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 349 - 475
Target Start/End: Original strand, 36317816 - 36317944
Alignment:
Q  349 tgtgaattaagactcaaaa-tcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataa 447  Q
    ||||||||  ||||||||| ||||| ||||| |||||| |||||||  | |||  |||||| |||||| || ||| ||||| ||||||||||| ||||||    
T  36317816 tgtgaatttggactcaaaactcacaccaatacaaacaatgatgtgtagaacaaatgaaagtagtaaccaatttcaaagtaaacacaagcaacagcaataa 36317915  T
Q  448 caa-aacacatagatctaatctagaaatc 475  Q
     || ||||| ||||| |||||||| ||||    
T  36317916 taacaacacctagatttaatctagtaatc 36317944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 475
Target Start/End: Original strand, 12123434 - 12123521
Alignment:
Q  388 atgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataacaaaacacatagatctaatctagaaatc 475  Q
    ||||||| ||||| ||||||| |||||| |||||| ||||| | ||| ||||||||| || || | || || ||||||||||||||||    
T  12123434 atgtgtggagcaaaggaaagtagtaaccaatatcaaagtaacctcaaacaacaacaacaataacaaacctatatctaatctagaaatc 12123521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 309
Target Start/End: Complemental strand, 2420005 - 2419951
Alignment:
Q  256 ttagtctcttaaattgaaaa-tatcaatcaatttagtgatttcttcaaattttgc 309  Q
    ||||||||||||||| |||| ||||||||||||||||  ||| ||||||||||||    
T  2420005 ttagtctcttaaatttaaaaatatcaatcaatttagtctttttttcaaattttgc 2419951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 438
Target Start/End: Original strand, 17057172 - 17057261
Alignment:
Q  349 tgtgaattaagactcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaa 438  Q
    ||||||||  |||||||||||||| ||||| |||  | |||||||  ||||| ||||||| |||||| |||||| ||| | |||||||||    
T  17057172 tgtgaattcggactcaaaatcacaccaatacaaaatatgatgtgtagagcaaaggaaagtagtaaccaatatcaaagtgaacacaagcaa 17057261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 438
Target Start/End: Original strand, 17085155 - 17085244
Alignment:
Q  349 tgtgaattaagactcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaa 438  Q
    ||||||||  |||||||||||||| ||||| |||  | |||||||  ||||| ||||||| |||||| |||||| ||| | |||||||||    
T  17085155 tgtgaattcggactcaaaatcacaccaatacaaaatatgatgtgtagagcaaaggaaagtagtaaccaatatcaaagtgaacacaagcaa 17085244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 5e-23; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 349 - 473
Target Start/End: Original strand, 12702434 - 12702562
Alignment:
Q  349 tgtgaattaagactcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataac 448  Q
    ||||||||  |||||||||||||||||||| |||| | |||||||| ||||| ||||||| |||||| |||||| ||||| ||||||||||||||||||     
T  12702434 tgtgaattcggactcaaaatcacatcaatacaaactatgatgtgtggagcaaaggaaagtagtaaccaatatcaaagtaaacacaagcaacaacaataat 12702533  T
Q  449 aaaa----cacatagatctaatctagaaa 473  Q
    || |    ||| |||||||||||||||||    
T  12702534 aacaacgacacctagatctaatctagaaa 12702562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 349 - 475
Target Start/End: Original strand, 41366421 - 41366548
Alignment:
Q  349 tgtgaattaagactcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataac 448  Q
    ||||||||  |||||||||||||| ||||| |||| | |||||||| ||||| ||||||| |||||| |||||| ||||| ||||||||| ||||| ||     
T  41366421 tgtgaattcggactcaaaatcacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaaccaatatcaaagtaaacacaagcaataacaacaat 41366520  T
Q  449 aa-aacacatagatctaatctagaaatc 475  Q
    || ||||| |||||||||| ||| ||||    
T  41366521 aacaacacctagatctaatataggaatc 41366548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 349 - 475
Target Start/End: Complemental strand, 30143705 - 30143577
Alignment:
Q  349 tgtgaattaagactcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaa----caacaa 444  Q
    |||||||| ||||||||||||||| ||||| |||| | |||||||| ||||| ||||||| |||||| |||||| ||| | |||||||||    ||||||    
T  30143705 tgtgaattcagactcaaaatcacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaaccaatatcaaagtgaacacaagcaataatcaacaa 30143606  T
Q  445 taacaaaacacatagatctaatctagaaatc 475  Q
    ||||  ||||| |||||||||||||| ||||    
T  30143605 taac--aacacctagatctaatctaggaatc 30143577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 359 - 470
Target Start/End: Complemental strand, 43036778 - 43036665
Alignment:
Q  359 gactcaaaa-tcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataacaa-aacaca 456  Q
    ||||||||| ||||| ||||| ||| || |||||||| ||||| ||||||| |||||| || ||| ||||| ||||||||||||||||||||| | |||     
T  43036778 gactcaaaactcacaccaatacaaaaaatgatgtgtggagcaaaggaaagtagtaaccaatttcaaagtaaacacaagcaacaacaataacaacaccacc 43036679  T
Q  457 tagatctaatctag 470  Q
    ||||||||||||||    
T  43036678 tagatctaatctag 43036665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 349 - 475
Target Start/End: Original strand, 1345179 - 1345306
Alignment:
Q  349 tgtgaattaagactcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataac 448  Q
    ||||||||  || |||||||||||  |||| ||||||  || |||| ||||| ||||||| |||||| |||||| ||||| ||||| ||||||||||||     
T  1345179 tgtgaattcggattcaaaatcacacaaatacaaacaataatctgtggagcaaaggaaagtagtaaccaatatcaaagtaaacacaaacaacaacaataat 1345278  T
Q  449 aa-aacacatagatctaatctagaaatc 475  Q
    || ||||| |||||||||||||| ||||    
T  1345279 aataacacctagatctaatctagtaatc 1345306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 349 - 475
Target Start/End: Complemental strand, 6599330 - 6599206
Alignment:
Q  349 tgtgaattaagactcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataac 448  Q
    ||||||||  |||||||||||||| ||||| |||| | |||||||  ||||| ||||||| |||||| |||||| ||| | ||||| |||||| ||||||    
T  6599330 tgtgaattcggactcaaaatcacaccaatacaaactatgatgtgtagagcaaaggaaagtagtaaccaatatcaaagtgaacacaaacaacaataataac 6599231  T
Q  449 aaaacacatagatctaatctagaaatc 475  Q
      ||||| |||||||||||||| ||||    
T  6599230 --aacacctagatctaatctagtaatc 6599206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 349 - 475
Target Start/End: Complemental strand, 6674783 - 6674659
Alignment:
Q  349 tgtgaattaagactcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataac 448  Q
    ||||||||  |||||||||||||| ||||| |||| | |||||||  ||||| ||||||| |||||| |||||| ||| | ||||| |||||| ||||||    
T  6674783 tgtgaattcggactcaaaatcacaccaatacaaactatgatgtgtagagcaaaggaaagtagtaaccaatatcaaagtgaacacaaacaacaataataac 6674684  T
Q  449 aaaacacatagatctaatctagaaatc 475  Q
      ||||| |||||||||||||| ||||    
T  6674683 --aacacctagatctaatctagtaatc 6674659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 349 - 475
Target Start/End: Complemental strand, 40321439 - 40321313
Alignment:
Q  349 tgtgaattaagactcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataac 448  Q
    ||||||||  |||||||||||||| ||||| |||| | ||| |||| ||||| ||||||| | || | |||||| ||||| ||||||||||||||||||     
T  40321439 tgtgaattccgactcaaaatcaca-caatacaaactatgatatgtggagcaaaggaaagtagcaatcaatatcaaagtaaacacaagcaacaacaataat 40321341  T
Q  449 aa-aacacatagatctaatctagaaatc 475  Q
    || ||||| |||||||||||||| ||||    
T  40321340 aacaacacctagatctaatctagtaatc 40321313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 368 - 475
Target Start/End: Original strand, 3303493 - 3303601
Alignment:
Q  368 tcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataacaa-aacacatagatctaat 466  Q
    ||||| ||||| |||| | |||||||| ||||| |||||||||||||| |||||| |  || |||||||||||||||||| ||  |||| ||||||||||    
T  3303493 tcacaccaatacaaactatgatgtgtggagcaaaggaaagtggtaaccaatatcaaaacaaacacaagcaacaacaataataactacacctagatctaat 3303592  T
Q  467 ctagaaatc 475  Q
    |||| ||||    
T  3303593 ctaggaatc 3303601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 349 - 447
Target Start/End: Complemental strand, 5689632 - 5689533
Alignment:
Q  349 tgtgaattaagactcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatc-acaagcaacaacaataa 447  Q
    ||||||||  |||||||||||||| ||||| |||| | |||||||| ||||| ||||||| |||||| |||||| || || | |||||||||||||||||    
T  5689632 tgtgaattccgactcaaaatcacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaaccaatatcaaagcaaacaacaagcaacaacaataa 5689533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 351 - 475
Target Start/End: Original strand, 18105881 - 18106006
Alignment:
Q  351 tgaattaagactcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataacaa 450  Q
    |||||| |||||||||||||||  |||| |||| | |||||||  ||||| ||||||| |||||| |||| | ||||| ||||||||| ||||| || ||    
T  18105881 tgaattcagactcaaaatcacactaatacaaactatgatgtgtagagcaaaggaaagtagtaaccaatattaaagtaaacacaagcaataacaacaataa 18105980  T
Q  451 -aacacatagatctaatctagaaatc 475  Q
     | ||| |||||||||||||| ||||    
T  18105981 catcacctagatctaatctaggaatc 18106006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 360 - 475
Target Start/End: Complemental strand, 4732012 - 4731895
Alignment:
Q  360 actcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaa----caacaataacaaaacac 455  Q
    ||||||||||||| ||||| |||||| |||||||| ||||| ||||||| |||||| |||||| ||| | ||||| |||    ||||||||||  | |||    
T  4732012 actcaaaatcacaccaatacaaacaatgatgtgtggagcaaaggaaagtagtaaccgatatcaaagtgaacacaaacaataatcaacaataac--agcac 4731915  T
Q  456 atagatctaatctagaaatc 475  Q
     |||||||||||||| ||||    
T  4731914 ctagatctaatctaggaatc 4731895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 361 - 475
Target Start/End: Complemental strand, 44304208 - 44304092
Alignment:
Q  361 ctcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaa----caacaataacaaaacaca 456  Q
    |||||||||||| ||||| | || | |||||||| ||||| ||||||| |||||| |||| | ||| | |||||||||    ||||||||||  |||||     
T  44304208 ctcaaaatcacaccaatacatactatgatgtgtggagcaaaggaaagtagtaaccaatattaaagtgagcacaagcaataatcaacaataac--aacacc 44304111  T
Q  457 tagatctaatctagaaatc 475  Q
    |||||||||||||||||||    
T  44304110 tagatctaatctagaaatc 44304092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 361 - 470
Target Start/End: Complemental strand, 8154132 - 8154024
Alignment:
Q  361 ctcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataacaaaacacataga 460  Q
    ||||||||||||  ||||||| | | |||||||| || || ||||||| |||| | |||||| ||||| |||||||||||||||||| || | || ||||    
T  8154132 ctcaaaatcacactaataaaa-ctatgatgtgtgaagtaaaggaaagtagtaatcaatatcaaagtaaccacaagcaacaacaataataacaaacctaga 8154034  T
Q  461 tctaatctag 470  Q
    | ||||||||    
T  8154033 tgtaatctag 8154024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 427 - 474
Target Start/End: Original strand, 3051009 - 3051057
Alignment:
Q  427 aatcacaagcaacaacaataacaa-aacacatagatctaatctagaaat 474  Q
    ||||||||||||||||||||| || ||||| ||||||||||||||||||    
T  3051009 aatcacaagcaacaacaataataacaacacctagatctaatctagaaat 3051057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 475
Target Start/End: Original strand, 8965506 - 8965619
Alignment:
Q  360 actcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataacaaaacacatag 459  Q
    ||||||||||||| |||||||| | | |||| ||| ||||| |||| || |||||| |||||| ||||| ||||||||||||||| || || | || |||    
T  8965506 actcaaaatcacaccaataaaa-ctatgatgcgtggagcaa-ggaacgtagtaaccaatatcaaagtaaccacaagcaacaacaacaataacaaacctag 8965603  T
Q  460 atctaatctagaaatc 475  Q
    || |||||||| ||||    
T  8965604 atttaatctaggaatc 8965619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 475
Target Start/End: Complemental strand, 10015414 - 10015312
Alignment:
Q  374 caataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataacaa-aacacatagatctaatctagaa 472  Q
    |||| |||||||||||||||| ||||  |||||||  ||||| |||||| ||| | ||||||||| |||||||| || || || |||||||||| ||| |    
T  10015414 caatgaaaacaaagatgtgtggagcagaggaaagtaataaccaatatcaaagtgaacacaagcaaaaacaataataacaatacctagatctaatttagta 10015315  T
Q  473 atc 475  Q
    |||    
T  10015314 atc 10015312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 444
Target Start/End: Original strand, 4743070 - 4743126
Alignment:
Q  388 atgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaa 444  Q
    ||||||| ||||| |||||||||||||| ||| || ||||| ||||||||| |||||    
T  4743070 atgtgtggagcaaaggaaagtggtaaccaataccaaagtaaacacaagcaataacaa 4743126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 8e-22; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 344 - 453
Target Start/End: Complemental strand, 23344334 - 23344226
Alignment:
Q  344 agtgctgtgaattaagactcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaaca 443  Q
    |||| |||||||| |||| ||||||||||||||||||| | | |||||||| ||||| ||||||| |||||| |||||  ||||| ||||||||||||||    
T  23344334 agtgttgtgaattcagacccaaaatcacatcaataaaa-ctatgatgtgtggagcaaaggaaagtagtaaccaatatccaagtaaccacaagcaacaaca 23344236  T
Q  444 ataacaaaac 453  Q
    ||||||||||    
T  23344235 ataacaaaac 23344226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 368 - 475
Target Start/End: Complemental strand, 1113998 - 1113890
Alignment:
Q  368 tcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataacaa-aacacatagatctaat 466  Q
    ||||||||||| |||| | |||||||| ||||| |||||||||||||  |||||| ||||| ||||||||| ||||| || || ||||| ||||||||||    
T  1113998 tcacatcaatacaaactatgatgtgtggagcaaaggaaagtggtaactaatatcaaagtaaacacaagcaataacaacaataataacacctagatctaat 1113899  T
Q  467 ctagaaatc 475  Q
    |||| ||||    
T  1113898 ctaggaatc 1113890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 349 - 475
Target Start/End: Complemental strand, 19502544 - 19502416
Alignment:
Q  349 tgtgaattaagactcaaaa-tcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataa 447  Q
    |||||||| |||||||||| |||||  |||| |||| | |||||||| ||||| ||||||| |||||| || ||| |||||  |||||||||||||||||    
T  19502544 tgtgaattcagactcaaaactcacactaatacaaactatgatgtgtggagcaaaggaaagtagtaaccaatttcaaagtaaatacaagcaacaacaataa 19502445  T
Q  448 caa-aacacatagatctaatctagaaatc 475  Q
     || ||||| |||||||||||||| ||||    
T  19502444 taacaacacctagatctaatctagtaatc 19502416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 349 - 475
Target Start/End: Original strand, 23564874 - 23564996
Alignment:
Q  349 tgtgaattaagactcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataac 448  Q
    |||||||| |||||||||||||||  ||||||  || ||||||||| ||  | | ||||| || ||| |||||| ||||| |||||||||||||||||||    
T  23564874 tgtgaattcagactcaaaatcacactaataaa--catagatgtgtggagtgaagaaaagtagtgaccaatatcaaagtaaccacaagcaacaacaataac 23564971  T
Q  449 aaaacacatagatctaatctagaaatc 475  Q
    |||  || |||||||||||||||||||    
T  23564972 aaa--acctagatctaatctagaaatc 23564996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 368 - 475
Target Start/End: Original strand, 47675959 - 47676067
Alignment:
Q  368 tcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataacaa-aacacatagatctaat 466  Q
    ||||| ||||| |||| | |||||||| ||||| ||||||| |||||| |||||| ||| | |||||||||||||||||| || ||||| ||||||||||    
T  47675959 tcacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaaccaatatcaaagtgaacacaagcaacaacaataataacaacacctagatctaat 47676058  T
Q  467 ctagaaatc 475  Q
    |||| ||||    
T  47676059 ctagtaatc 47676067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 349 - 475
Target Start/End: Original strand, 14069636 - 14069764
Alignment:
Q  349 tgtgaattaagactcaaaa-tcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataa 447  Q
    ||||||||  ||||||||| ||||| ||||| |||| | |||||||| ||||| ||||||| |||||  || ||| ||||| |||||||||||| |||||    
T  14069636 tgtgaattcggactcaaaactcacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaactaatttcaaagtaaacacaagcaacaataataa 14069735  T
Q  448 caa-aacacatagatctaatctagaaatc 475  Q
     || ||||| |||||||||||||| ||||    
T  14069736 taacaacacctagatctaatctagtaatc 14069764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 349 - 475
Target Start/End: Original strand, 14379664 - 14379792
Alignment:
Q  349 tgtgaattaagactcaaaa-tcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataa 447  Q
    ||||||||  ||||||||| ||||| ||||| |||| | |||||||| ||||| ||||||| |||||  || ||| ||||| |||||||||||| |||||    
T  14379664 tgtgaattcggactcaaaactcacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaactaatttcaaagtaaacacaagcaacaataataa 14379763  T
Q  448 caa-aacacatagatctaatctagaaatc 475  Q
     || ||||| |||||||||||||| ||||    
T  14379764 taacaacacctagatctaatctagtaatc 14379792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 368 - 475
Target Start/End: Original strand, 41317261 - 41317369
Alignment:
Q  368 tcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataacaa-aacacatagatctaat 466  Q
    ||||| ||||| |||| | ||||| || ||||| ||||||| |||||| |||||| ||| | |||||||||||||||||| || ||||| ||||||||||    
T  41317261 tcacaccaatacaaactatgatgtttggagcaaaggaaagtagtaaccaatatcaaagtgaacacaagcaacaacaataataacaacacctagatctaat 41317360  T
Q  467 ctagaaatc 475  Q
    |||| ||||    
T  41317361 ctagtaatc 41317369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 349 - 475
Target Start/End: Original strand, 36146215 - 36146343
Alignment:
Q  349 tgtgaattaagactcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatca-caagcaacaacaataa 447  Q
    ||||||||  |||||||||| |||  |||| |||| | |||||||| ||||| ||||||| |||||| |||||| || || || ||||||||||||||||    
T  36146215 tgtgaattcggactcaaaattacacaaatacaaactatgatgtgtggagcaaaggaaagtagtaaccaatatcaaagcaaacaacaagcaacaacaataa 36146314  T
Q  448 caa-aacacatagatctaatctagaaatc 475  Q
     || ||||  |||||||||||||| ||||    
T  36146315 taacaacatctagatctaatctagtaatc 36146343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 359 - 469
Target Start/End: Complemental strand, 8153692 - 8153581
Alignment:
Q  359 gactcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataacaa-aacacat 457  Q
    ||||||||||||||  |||| |||| | |||| ||| ||||| ||||||| |||| | |||||| ||| | |||||||||||||||||| || ||||| |    
T  8153692 gactcaaaatcacactaatacaaactatgatgcgtggagcaaaggaaagtagtaatcaatatcaaagtgagcacaagcaacaacaataataacaacacct 8153593  T
Q  458 agatctaatcta 469  Q
    |||||| |||||    
T  8153592 agatctgatcta 8153581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 349 - 475
Target Start/End: Complemental strand, 23555407 - 23555278
Alignment:
Q  349 tgtgaattaagactcaaaa-tcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaa----caaca 443  Q
    ||||||||  ||||||||| ||||| ||||| |||| | |||||||| ||||| ||||||| |||||| |||||| ||| | |||||||||    |||||    
T  23555407 tgtgaattcggactcaaaactcacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaaccaatatcaaagtgaacacaagcaataatcaaca 23555308  T
Q  444 ataacaaaacacatagatctaatctagaaatc 475  Q
    |||||||  ||| |||||||||||||| ||||    
T  23555307 ataacaa--cacctagatctaatctaggaatc 23555278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 360 - 475
Target Start/End: Complemental strand, 25616209 - 25616092
Alignment:
Q  360 actcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaa----caacaataacaaaacac 455  Q
    ||||||||||||| ||||| |||| | ||||| || ||||| ||||||| |||||| |||||| ||| | |||||||||    ||||||||||  |||||    
T  25616209 actcaaaatcacaccaatacaaactatgatgtatggagcaaaggaaagtagtaaccaatatcaaagtgaacacaagcaataatcaacaataac--aacac 25616112  T
Q  456 atagatctaatctagaaatc 475  Q
     |||||||||||||| ||||    
T  25616111 ctagatctaatctaggaatc 25616092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 341 - 475
Target Start/End: Original strand, 38671020 - 38671155
Alignment:
Q  341 gatagtgctgtgaattaagactcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaaca 440  Q
    ||||||| ||||||||  |||||||||||||| ||||| |||| | |||||||| ||||| ||||| | |||||  | |||| ||| | ||||||||||     
T  38671020 gatagtgttgtgaattcggactcaaaatcacaccaatacaaactatgatgtgtggagcaaaggaaaatagtaacaaaaatcaaagtgaacacaagcaacg 38671119  T
Q  441 acaataa-caaaacacatagatctaatctagaaatc 475  Q
    |||||||  | ||||| |||||| ||||||| ||||    
T  38671120 acaataatgacaacacctagatcaaatctagtaatc 38671155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 349 - 444
Target Start/End: Original strand, 41648817 - 41648912
Alignment:
Q  349 tgtgaattaagactcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaa 444  Q
    ||||||||  |||||||||||||| ||||| |||| | |||||||| ||||| ||||||| |||||  |||||| ||| | ||||||||| |||||    
T  41648817 tgtgaattcggactcaaaatcacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaactaatatcaaagtgaacacaagcaataacaa 41648912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 475
Target Start/End: Original strand, 495788 - 495918
Alignment:
Q  346 tgctgtgaattaagactcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaat 445  Q
    |||||| ||||  ||||||||||||||  |||| |||  | ||| |||| ||||| ||||||| |||||| |||||| ||||| ||||| ||| |||||     
T  495788 tgctgtaaatttggactcaaaatcacactaatacaaattatgatatgtggagcaaaggaaagtagtaaccaatatcaaagtaaacacaaacaataacaac 495887  T
Q  446 aacaa-aacacatagatctaatctagaaatc 475  Q
    || || ||||| |||||||||||||| ||||    
T  495888 aataacaacacctagatctaatctaggaatc 495918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 402 - 475
Target Start/End: Original strand, 30024613 - 30024687
Alignment:
Q  402 ggaaagtggtaacctatatcatagtaatcacaagcaacaacaataacaa-aacacatagatctaatctagaaatc 475  Q
    ||||||| |||||| || ||| ||||| |||||||||||||||||| || ||||| |||||||||||||| ||||    
T  30024613 ggaaagtagtaaccaatttcaaagtaaacacaagcaacaacaataataacaacacctagatctaatctagtaatc 30024687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 386 - 475
Target Start/End: Original strand, 4253375 - 4253464
Alignment:
Q  386 agatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataacaaaacacatagatctaatctagaaatc 475  Q
    ||||||||| |||||  ||||||  ||||| |||||| ||||| | || ||||||||||||| |||| || |||||||||| ||||||||    
T  4253375 agatgtgtgtagcaaaagaaagtattaaccaatatcaaagtaacctcaggcaacaacaataataaaaaacctagatctaatatagaaatc 4253464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 387 - 475
Target Start/End: Original strand, 31105241 - 31105327
Alignment:
Q  387 gatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataacaaaacacatagatctaatctagaaatc 475  Q
    |||||||| || || ||||||| |||| | |||||| ||||| |||||||||||||||||||  |||||  ||||||||||||| ||||    
T  31105241 gatgtgtggagtaaaggaaagtagtaatcaatatcaaagtaaacacaagcaacaacaataac--aacaccaagatctaatctaggaatc 31105327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 368 - 475
Target Start/End: Original strand, 47673767 - 47673875
Alignment:
Q  368 tcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataacaa-aacacatagatctaat 466  Q
    ||||| ||||| |||| | |||||||| | |||  |||||| |||||| |||||| ||| | ||||| |||||||||||| || ||||| ||||||||||    
T  47673767 tcacaccaatacaaactatgatgtgtggaacaaaagaaagtagtaaccaatatcaaagtgaacacaaacaacaacaataataacaacacctagatctaat 47673866  T
Q  467 ctagaaatc 475  Q
    |||| ||||    
T  47673867 ctagtaatc 47673875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 475
Target Start/End: Complemental strand, 48489796 - 48489668
Alignment:
Q  349 tgtgaattaagactcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaa----caacaa 444  Q
    ||||||||  |||||||||||||| |||||  ||| | |||||||| ||||| ||||||| |||||| |||||| ||| | ||  |||||    ||||||    
T  48489796 tgtgaattcggactcaaaatcacaccaataccaactatgatgtgtggagcaaaggaaagtagtaaccaatatcaaagtgaacatgagcaataatcaacaa 48489697  T
Q  445 taacaaaacacatagatctaatctagaaatc 475  Q
    ||||  ||||| |||||||||||||| ||||    
T  48489696 taac--aacacctagatctaatctaggaatc 48489668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 349 - 475
Target Start/End: Original strand, 24525309 - 24525437
Alignment:
Q  349 tgtgaattaagactcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatc-acaagcaacaacaataa 447  Q
    |||||||| | | ||||||||||||||||| |||| | ||| |||| ||||| | ||||| |||| | |||||| || || | |||||||||||||||||    
T  24525309 tgtgaattcaaattcaaaatcacatcaatacaaactatgatatgtgtagcaaagaaaagtagtaatcaatatcaaagcaaacaacaagcaacaacaataa 24525408  T
Q  448 caa-aacacatagatctaatctagaaatc 475  Q
     || ||||| |||||| ||| ||| ||||    
T  24525409 taacaacacctagatcaaatttagtaatc 24525437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 5e-20; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 349 - 475
Target Start/End: Original strand, 51351944 - 51352069
Alignment:
Q  349 tgtgaattaagactcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataac 448  Q
    ||||||||  ||||||||||||||||||||| | | | |||||||| ||||| |||||||||||||| |||||| |||||||||||||| || ||| ||     
T  51351944 tgtgaattcggactcaaaatcacatcaataata-ctacgatgtgtggagcaaaggaaagtggtaaccaatatcaaagtaatcacaagcagcagcaacaat 51352042  T
Q  449 aaaacacatagatctaatctagaaatc 475  Q
    || | || |||||||||||||| ||||    
T  51352043 aacaaacctagatctaatctaggaatc 51352069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 359 - 475
Target Start/End: Original strand, 44700297 - 44700414
Alignment:
Q  359 gactcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataacaa-aacacat 457  Q
    |||||||||||||| ||||| |||| | ||||  || ||||| | ||||| |||||| |||||| ||||| |||||||||||||||||| || ||||| |    
T  44700297 gactcaaaatcacaccaatacaaactatgatgcatggagcaaagaaaagtagtaaccaatatcaaagtaaacacaagcaacaacaataataacaacacct 44700396  T
Q  458 agatctaatctagaaatc 475  Q
    ||||||||||||| ||||    
T  44700397 agatctaatctagtaatc 44700414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 384 - 475
Target Start/End: Original strand, 21350849 - 21350938
Alignment:
Q  384 aaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataacaaaacacatagatctaatctagaaatc 475  Q
    ||||||||||| ||||| ||||||| |||||| |||||| ||||| ||||| |||||||||||||  ||||| |||||||||||||| ||||    
T  21350849 aaagatgtgtgaagcaaaggaaagtagtaaccaatatcaaagtaaacacaaacaacaacaataac--aacacttagatctaatctaggaatc 21350938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 349 - 475
Target Start/End: Original strand, 22834810 - 22834937
Alignment:
Q  349 tgtgaattaagactcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataac 448  Q
    ||||||||  |||||||||||||| ||||| |||| | |||||||| ||||| ||||||| |||||| |||||| ||||| |||| | || ||||| ||     
T  22834810 tgtgaattcggactcaaaatcacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaaccaatatcaaagtaaacacaggtaataacaacaat 22834909  T
Q  449 aa-aacacatagatctaatctagaaatc 475  Q
    || ||||| |||||||||||||| ||||    
T  22834910 aacaacacctagatctaatctaggaatc 22834937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 343 - 475
Target Start/End: Original strand, 9666267 - 9666401
Alignment:
Q  343 tagtgctgtgaattaagactcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatag-taatcacaagcaacaa 441  Q
    ||||| ||||||||  |||||||||||||| ||||| |||| | ||| |||| ||||| ||||||| |||||| |||||| ||  ||| ||||||||| |    
T  9666267 tagtgttgtgaattcggactcaaaatcacaccaatacaaactatgatctgtggagcaaaggaaagtagtaaccaatatcaaagcaaataacaagcaacta 9666366  T
Q  442 caataacaa-aacacatagatctaatctagaaatc 475  Q
    |||||| || ||||| |||||||||||||| ||||    
T  9666367 caataataacaacacctagatctaatctagtaatc 9666401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 349 - 470
Target Start/End: Original strand, 27305522 - 27305641
Alignment:
Q  349 tgtgaattaagactcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataac 448  Q
    ||||||||  |||||||||||||| |||||||  | | |||||||| ||||| ||||||| |||||| |||||| |||||  |||||||||||||| ||     
T  27305522 tgtgaattcggactcaaaatcacaccaataaa--ctatgatgtgtggagcaaaggaaagtagtaaccaatatcaaagtaacaacaagcaacaacaacaat 27305619  T
Q  449 aaaacacatagatctaatctag 470  Q
    ||   || ||||||||||||||    
T  27305620 aaccaacctagatctaatctag 27305641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 359 - 444
Target Start/End: Complemental strand, 16499369 - 16499284
Alignment:
Q  359 gactcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaa 444  Q
    |||||||||||||||||||| |||| |  ||||||| ||||| ||||||| |||||| | |||| ||||| ||||||||| |||||    
T  16499369 gactcaaaatcacatcaatacaaactataatgtgtggagcaaaggaaagtagtaaccaacatcaaagtaaacacaagcaataacaa 16499284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 368 - 475
Target Start/End: Original strand, 23410154 - 23410262
Alignment:
Q  368 tcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataacaa-aacacatagatctaat 466  Q
    ||||||||||| |||| | |||||||| | ||| ||||||| ||||| ||||||| ||| | |||||||||||| ||||  || ||||| ||||||||||    
T  23410154 tcacatcaatacaaactatgatgtgtggatcaaaggaaagtagtaacatatatcaaagtgaacacaagcaacaaaaatattaacaacacctagatctaat 23410253  T
Q  467 ctagaaatc 475  Q
    |||| ||||    
T  23410254 ctagtaatc 23410262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 359 - 438
Target Start/End: Complemental strand, 9581638 - 9581559
Alignment:
Q  359 gactcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaa 438  Q
    |||||||||||||| ||||| |||| | |||||||| ||||| ||||||| |||||| |||||| ||| | |||||||||    
T  9581638 gactcaaaatcacaccaatataaactatgatgtgtgaagcaaaggaaagtagtaaccaatatcaaagtgagcacaagcaa 9581559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 361 - 475
Target Start/End: Original strand, 9635939 - 9636055
Alignment:
Q  361 ctcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaa----caacaataacaaaacaca 456  Q
    |||||||||||| ||||| |||| | |||||||| ||||| ||||||| |||||| |||||| ||| | |||||||||    ||||||||||  | |||     
T  9635939 ctcaaaatcacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaaccaatatcaaagtgaacacaagcaataatcaacaataac--agcacc 9636036  T
Q  457 tagatctaatctagaaatc 475  Q
    |||||||||||||| ||||    
T  9636037 tagatctaatctaggaatc 9636055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 368 - 468
Target Start/End: Original strand, 29196212 - 29196314
Alignment:
Q  368 tcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatca-caagcaacaacaataacaa-aacacatagatctaa 465  Q
    ||||| ||||| |||| | |||||||| ||||| ||||||| |||||| |||||| || || || |||||||||||||||| || ||||| |||||||||    
T  29196212 tcacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaaccaatatcaaagcaaacaacaagcaacaacaataataacaacacctagatctaa 29196311  T
Q  466 tct 468  Q
    |||    
T  29196312 tct 29196314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 363 - 469
Target Start/End: Complemental strand, 45095514 - 45095406
Alignment:
Q  363 caaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaa----caacaataacaaaacacata 458  Q
    |||||||||||||||| |||| | |||||||  ||||| ||||||| |||||| |||||| ||| | |||||||||    ||||||||||  | ||||||    
T  45095514 caaaatcacatcaatacaaactatgatgtgtagagcaaaggaaagtagtaaccaatatcaaagtgagcacaagcaataatcaacaataac--agcacata 45095417  T
Q  459 gatctaatcta 469  Q
    |||||||||||    
T  45095416 gatctaatcta 45095406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 359 - 475
Target Start/End: Complemental strand, 31314795 - 31314678
Alignment:
Q  359 gactcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataacaa-aacacat 457  Q
    |||||||||||||| ||||| |||| | ||||| || ||||| |||||||  ||||  |||| | ||||| |||||||||||||||||| || ||||| |    
T  31314795 gactcaaaatcacaccaatacaaactatgatgtatggagcaaaggaaagtaataactaatattaaagtaaacacaagcaacaacaataataacaacacct 31314696  T
Q  458 agatctaatctagaaatc 475  Q
    | || |||||||| ||||    
T  31314695 aaatataatctagtaatc 31314678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 349 - 441
Target Start/End: Original strand, 2074886 - 2074977
Alignment:
Q  349 tgtgaattaagactcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaa 441  Q
    ||||||||  ||| |||||||||| |||||||| | | |||||||| ||||| ||||||| |||||| |||||| | ||| ||||||||||||    
T  2074886 tgtgaattcggacccaaaatcacaccaataaaa-ctatgatgtgtggagcaaaggaaagtagtaaccaatatcaaaataaccacaagcaacaa 2074977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 368 - 475
Target Start/End: Original strand, 23391735 - 23391843
Alignment:
Q  368 tcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataacaa-aacacatagatctaat 466  Q
    ||||| ||||| |||| | |||||||| || || |||||||  ||||| |||||| ||| | |||||| ||||||||||| || ||||| ||||||||||    
T  23391735 tcacaccaatacaaactatgatgtgtggagaaaaggaaagtaataaccaatatcaaagtgaacacaagaaacaacaataataacaacacctagatctaat 23391834  T
Q  467 ctagaaatc 475  Q
    |||| ||||    
T  23391835 ctagtaatc 23391843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 368 - 475
Target Start/End: Original strand, 39153187 - 39153295
Alignment:
Q  368 tcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataacaa-aacacatagatctaat 466  Q
    ||||| ||||| |||| | |||||||| ||||| ||||||| |||||| || ||| ||||| |||||||  || |||||| || ||||| ||||||||||    
T  39153187 tcacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaaccaatttcaaagtaaacacaagcggcagcaataataacaacacctagatctaat 39153286  T
Q  467 ctagaaatc 475  Q
    |||| ||||    
T  39153287 ctagtaatc 39153295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 435
Target Start/End: Complemental strand, 40734850 - 40734776
Alignment:
Q  361 ctcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaag 435  Q
    |||||||||||| ||||| |||| | |||||||| ||||| ||||||| |||||| |||||| ||| | ||||||    
T  40734850 ctcaaaatcacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaaccaatatcaaagtgaacacaag 40734776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 444
Target Start/End: Complemental strand, 32891417 - 32891360
Alignment:
Q  387 gatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaa 444  Q
    |||||||| ||||| ||||||| |||||| |||| | ||||| |||||||||||||||    
T  32891417 gatgtgtggagcaaaggaaagtagtaaccaatattaaagtaaacacaagcaacaacaa 32891360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 8e-19; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 360 - 475
Target Start/End: Original strand, 50166994 - 50167110
Alignment:
Q  360 actcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataacaa-aacacata 458  Q
    ||||||||||||| ||| | |||| | |||||||| ||||| ||||||| |||||| |||||| ||||| |||||| ||||||||||| || ||||| ||    
T  50166994 actcaaaatcacaccaaaacaaactatgatgtgtggagcaaaggaaagtagtaaccaatatcaaagtaaacacaagaaacaacaataataacaacaccta 50167093  T
Q  459 gatctaatctagaaatc 475  Q
    |||||||||||| ||||    
T  50167094 gatctaatctagtaatc 50167110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 349 - 453
Target Start/End: Original strand, 927788 - 927890
Alignment:
Q  349 tgtgaattaagactcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataac 448  Q
    ||||||||  ||||||||||||||||||||||  | | |||||||| || || || ||||||||||| |||||| ||||||||||| ||||||||| |||    
T  927788 tgtgaattcggactcaaaatcacatcaataaa--ctatgatgtgtggagtaaagggaagtggtaaccaatatcaaagtaatcacaaacaacaacaacaac 927885  T
Q  449 aaaac 453  Q
    |||||    
T  927886 aaaac 927890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 349 - 468
Target Start/End: Original strand, 833973 - 834093
Alignment:
Q  349 tgtgaattaagactcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataac 448  Q
    ||||||||  |||||||||||||| ||||| |||| | |||||||| ||||| ||||||| |||||| |||||| ||||| ||||||||| ||||| ||     
T  833973 tgtgaattcggactcaaaatcacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaaccaatatcaaagtaaacacaagcaataacaacaat 834072  T
Q  449 aa-aacacatagatctaatct 468  Q
    || |||||  |||||||||||    
T  834073 aacaacaccaagatctaatct 834093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 349 - 468
Target Start/End: Complemental strand, 16455981 - 16455861
Alignment:
Q  349 tgtgaattaagactcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataac 448  Q
    ||||||||  |||||||||| ||| |||| ||||||||||| |||| |||||  |||||| |||||| |||||| ||||| |  |||||||||||||||     
T  16455981 tgtgaattcggactcaaaattacaccaatgaaaacaaagatttgtgtagcaaatgaaagtagtaaccaatatcaaagtaaacgtaagcaacaacaataat 16455882  T
Q  449 aa-aacacatagatctaatct 468  Q
    || |||| |||||||||||||    
T  16455881 aacaacatatagatctaatct 16455861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 349 - 475
Target Start/End: Complemental strand, 1833873 - 1833746
Alignment:
Q  349 tgtgaattaagactcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataac 448  Q
    ||||||||  ||||||| |||||| ||||| |||| | ||| |||| || || ||||||| |||||| || ||| ||||| ||||||||||||||||||     
T  1833873 tgtgaattcggactcaatatcacaccaatacaaactatgatctgtggagtaaaggaaagtcgtaaccaatttcaaagtaaacacaagcaacaacaataat 1833774  T
Q  449 aa-aacacatagatctaatctagaaatc 475  Q
    || ||||| |||||||||||||| ||||    
T  1833773 aacaacacctagatctaatctagtaatc 1833746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 349 - 475
Target Start/End: Original strand, 40122004 - 40122131
Alignment:
Q  349 tgtgaattaagactcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataac 448  Q
    ||||||||  |||||||||||||| ||||| |||| | |||| ||| ||||| ||||||| |||||| |||||  ||| | ||||||||||||||||||     
T  40122004 tgtgaattcggactcaaaatcacaccaatacaaactatgatgcgtggagcaaaggaaagtagtaaccaatatctaagtgaacacaagcaacaacaataat 40122103  T
Q  449 aa-aacacatagatctaatctagaaatc 475  Q
    || ||||| |||||||||| ||| ||||    
T  40122104 aacaacacctagatctaatttagtaatc 40122131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 349 - 475
Target Start/End: Original strand, 8550587 - 8550715
Alignment:
Q  349 tgtgaattaagactcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaa----caacaa 444  Q
    ||||||||  |||||||||||||| ||||| |||| | |||||||| ||||| ||||||| |||||| |||||| ||| | |||||||||    ||||||    
T  8550587 tgtgaattcggactcaaaatcacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaaccaatatcaaagtgaacacaagcaataatcaacaa 8550686  T
Q  445 taacaaaacacatagatctaatctagaaatc 475  Q
    ||||  ||||| |||||||||||||| ||||    
T  8550687 taac--aacacctagatctaatctaggaatc 8550715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 359 - 475
Target Start/End: Original strand, 13137793 - 13137911
Alignment:
Q  359 gactcaaaa-tcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataacaa-aacaca 456  Q
    ||||||||| ||||| ||||| |||  | |||||||| ||||| ||||||| |||||| || ||| ||||| |||||||||||||||||| || |||||     
T  13137793 gactcaaaactcacaccaatacaaattatgatgtgtggagcaaaggaaagtagtaaccaatttcaaagtaaacacaagcaacaacaataataacaacacc 13137892  T
Q  457 tagatctaatctagaaatc 475  Q
    |||||||||||||| ||||    
T  13137893 tagatctaatctagtaatc 13137911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 344 - 475
Target Start/End: Original strand, 45644156 - 45644289
Alignment:
Q  344 agtgctgtgaattaagactcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatc-acaagcaacaac 442  Q
    |||| ||||||||  ||||||||||||||  |||| |||| | |||||||| ||||| ||||||| |||||| |||||| || || | ||||||||||||    
T  45644156 agtgttgtgaattcggactcaaaatcacacaaatacaaactatgatgtgtggagcaaaggaaagtagtaaccaatatcaaagcaaacaacaagcaacaac 45644255  T
Q  443 aataacaa-aacacatagatctaatctagaaatc 475  Q
    ||||| || ||||  |||||||||||||| ||||    
T  45644256 aataataacaacatctagatctaatctagcaatc 45644289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 349 - 475
Target Start/End: Original strand, 28223224 - 28223352
Alignment:
Q  349 tgtgaattaagactcaaaa-tcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataa 447  Q
    ||||||||  ||||||||| ||| | ||||| |||| | |||||||| |||||  |||||| |||||| |||||| ||| | ||||||||||||||||||    
T  28223224 tgtgaattcggactcaaaactcagaccaatacaaactatgatgtgtggagcaaacgaaagtagtaaccaatatcaaagtgaacacaagcaacaacaataa 28223323  T
Q  448 caa-aacacatagatctaatctagaaatc 475  Q
     || ||||| |||||||||||||| ||||    
T  28223324 taacaacacctagatctaatctagtaatc 28223352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 349 - 444
Target Start/End: Original strand, 13659154 - 13659249
Alignment:
Q  349 tgtgaattaagactcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaa 444  Q
    ||||||||  |||||||||||||||||||| |||| |  ||||||| ||||| ||||||| |||||| | |||| ||||| ||||||||| |||||    
T  13659154 tgtgaattcggactcaaaatcacatcaatacaaactataatgtgtggagcaaaggaaagtagtaaccaacatcaaagtaaacacaagcaataacaa 13659249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 349 - 475
Target Start/End: Original strand, 23555074 - 23555201
Alignment:
Q  349 tgtgaattaagactcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataac 448  Q
    ||||||||  ||||||||||| || ||||| |||||| |||||||| ||||| | ||||| |||| | || ||| ||||| ||||||||||||||| ||     
T  23555074 tgtgaattcggactcaaaatcgcaccaatagaaacaatgatgtgtggagcaaagaaaagtagtaatcaatgtcaaagtaaacacaagcaacaacaacaat 23555173  T
Q  449 aa-aacacatagatctaatctagaaatc 475  Q
    || ||||| |||||||||| ||| ||||    
T  23555174 aacaacacctagatctaatttaggaatc 23555201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 343 - 469
Target Start/End: Complemental strand, 46065281 - 46065156
Alignment:
Q  343 tagtgctgtgaattaagactcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaac 442  Q
    ||||| ||||||||  ||||||||| |||| |||| |||||||||||||||| |||||  || ||| |||||| || ||| |||||  ||||||||||||    
T  46065281 tagtgttgtgaattcggactcaaaaccaca-caatgaaaacaaagatgtgtggagcaaacgatagttgtaaccaat-tcaaagtaaatacaagcaacaac 46065184  T
Q  443 aataacaa-aacacatagatctaatcta 469  Q
    ||||| || ||||| |||||||||||||    
T  46065183 aataataacaacacctagatctaatcta 46065156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 352 - 452
Target Start/End: Original strand, 8870533 - 8870634
Alignment:
Q  352 gaattaagactcaaaatcacatcaat-aaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataacaa 450  Q
    ||||| || |||||||||||| |||| ||||||||| ||||||| | ||| ||||||| |||||   ||||| ||||||||||||||| |||||||| ||    
T  8870533 gaatttaggctcaaaatcacaccaatgaaaaacaaatatgtgtggaacaaaggaaagtagtaactagtatcaaagtaatcacaagcaaaaacaataaaaa 8870632  T
Q  451 aa 452  Q
    ||    
T  8870633 aa 8870634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 359 - 475
Target Start/End: Original strand, 28265372 - 28265489
Alignment:
Q  359 gactcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataacaa-aacacat 457  Q
    |||||||||||||| ||||| |||| | |||||||| || || ||||| | ||| || |||||| ||| | |||||||||||||||||| || ||||  |    
T  28265372 gactcaaaatcacaccaatacaaactatgatgtgtggagtaaaggaaaatagtagccaatatcaaagtgaacacaagcaacaacaataataacaacatct 28265471  T
Q  458 agatctaatctagaaatc 475  Q
    ||||||||||||| ||||    
T  28265472 agatctaatctagtaatc 28265489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 353 - 438
Target Start/End: Complemental strand, 49918711 - 49918626
Alignment:
Q  353 aattaagactcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaa 438  Q
    |||| ||||||||||||||| ||||| |||| | |||||||| ||||| ||||||| |||||| |||||| ||| | |||||||||    
T  49918711 aattcagactcaaaatcacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaaccaatatcaaagtgaacacaagcaa 49918626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 363 - 475
Target Start/End: Original strand, 50169032 - 50169145
Alignment:
Q  363 caaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataacaa-aacacatagat 461  Q
    |||||||||| ||||| |||| | |||||||| |||||  |||||| |||||| |||||| ||| | ||||| |||||||||||| || ||||| || ||    
T  50169032 caaaatcacaccaatacaaactatgatgtgtgaagcaaatgaaagtagtaaccaatatcaaagtgaacacaaacaacaacaataataacaacacctatat 50169131  T
Q  462 ctaatctagaaatc 475  Q
    ||||||||| ||||    
T  50169132 ctaatctagtaatc 50169145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 360 - 475
Target Start/End: Original strand, 196724 - 196840
Alignment:
Q  360 actcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataacaa-aacacata 458  Q
    ||||||| ||||| ||||| |||  | |||||||| ||||| ||||| | |||||| |||||| ||| | |||||||||||||||||| || ||||| ||    
T  196724 actcaaattcacaccaatacaaattatgatgtgtggagcaaaggaaaatagtaaccaatatcaaagtgaacacaagcaacaacaataataacaacaccta 196823  T
Q  459 gatctaatctagaaatc 475  Q
     ||||||||||| ||||    
T  196824 catctaatctagtaatc 196840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 350 - 454
Target Start/End: Complemental strand, 3189708 - 3189604
Alignment:
Q  350 gtgaattaagactcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataaca 449  Q
    |||||||  ||| |||||||||| ||||| |||| | ||||| || ||||| ||||||| |||||| || ||| ||| | |||||||||||||||||| |    
T  3189708 gtgaattcggacacaaaatcacaccaatataaactatgatgtctggagcaaaggaaagtagtaaccaatttcaaagtgaacacaagcaacaacaataata 3189609  T
Q  450 aaaca 454  Q
    |||||    
T  3189608 aaaca 3189604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 350 - 454
Target Start/End: Complemental strand, 3198525 - 3198421
Alignment:
Q  350 gtgaattaagactcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataaca 449  Q
    |||||||  ||| |||||||||| ||||| |||| | ||||| || ||||| ||||||| |||||| || ||| ||| | |||||||||||||||||| |    
T  3198525 gtgaattcggacacaaaatcacaccaatataaactatgatgtctggagcaaaggaaagtagtaaccaatttcaaagtgaacacaagcaacaacaataata 3198426  T
Q  450 aaaca 454  Q
    |||||    
T  3198425 aaaca 3198421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 350 - 454
Target Start/End: Complemental strand, 3207364 - 3207260
Alignment:
Q  350 gtgaattaagactcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataaca 449  Q
    |||||||  ||| |||||||||| ||||| |||| | ||||| || ||||| ||||||| |||||| || ||| ||| | |||||||||||||||||| |    
T  3207364 gtgaattcggacacaaaatcacaccaatataaactatgatgtctggagcaaaggaaagtagtaaccaatttcaaagtgaacacaagcaacaacaataata 3207265  T
Q  450 aaaca 454  Q
    |||||    
T  3207264 aaaca 3207260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 368 - 475
Target Start/End: Original strand, 4552471 - 4552579
Alignment:
Q  368 tcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataacaa-aacacatagatctaat 466  Q
    ||||| ||||| |||| | |||| ||| || || ||||||| |||||| || ||| ||||| |||||| ||||||||||| || ||||||||||||||||    
T  4552471 tcacaccaatacaaactatgatgcgtgaagtaaaggaaagtagtaaccaatttcaaagtaaacacaagtaacaacaataataacaacacatagatctaat 4552570  T
Q  467 ctagaaatc 475  Q
    |||| ||||    
T  4552571 ctagtaatc 4552579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 438
Target Start/End: Complemental strand, 36683949 - 36683885
Alignment:
Q  374 caataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaa 438  Q
    ||||||||||||| ||||||| ||||| |||||||||||||| |||||| |||||  ||||||||    
T  36683949 caataaaaacaaacatgtgtggagcaaaggaaagtggtaaccaatatcaaagtaaaaacaagcaa 36683885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 349 - 447
Target Start/End: Original strand, 3846924 - 3847022
Alignment:
Q  349 tgtgaattaagactcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataa 447  Q
    ||||||||  |||||||||||| |  |||| |||| | |||||||| || || ||||||| |||||| |||||| ||| | ||||||||||||||||||    
T  3846924 tgtgaattcggactcaaaatcatactaatacaaactatgatgtgtggagtaaaggaaagtagtaaccaatatcaaagtgaacacaagcaacaacaataa 3847022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 349 - 475
Target Start/End: Complemental strand, 10925587 - 10925459
Alignment:
Q  349 tgtgaattaagactcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaa----caacaa 444  Q
    ||||||||  |||||||||||||| ||||| |||| | | |||||| ||||| ||||||| |||| | |||||| ||| | |||||||||    ||||||    
T  10925587 tgtgaattcggactcaaaatcacaacaatacaaactatgttgtgtggagcaaaggaaagtagtaatcaatatcaaagtgaacacaagcaataatcaacaa 10925488  T
Q  445 taacaaaacacatagatctaatctagaaatc 475  Q
    ||||  ||||| |||||||||||||| ||||    
T  10925487 taac--aacacctagatctaatctagtaatc 10925459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 449
Target Start/End: Complemental strand, 15820624 - 15820561
Alignment:
Q  386 agatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataaca 449  Q
    ||||||||| ||||| ||||||| |||||  |||||| ||||| ||||||||||||||| ||||    
T  15820624 agatgtgtggagcaaaggaaagtagtaactaatatcaaagtaaacacaagcaacaacaacaaca 15820561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 469
Target Start/End: Original strand, 30476260 - 30476371
Alignment:
Q  360 actcaaaa-tcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataacaa-aacacat 457  Q
    |||||||| ||||| ||||| |||| |  ||||||| || || ||||||| |||||| || ||| ||||| |||||||||||||||||| || ||||| |    
T  30476260 actcaaaactcacaccaatacaaactataatgtgtggagtaaaggaaagtagtaaccaatttcaaagtaaacacaagcaacaacaataataacaacactt 30476359  T
Q  458 agatctaatcta 469  Q
    ||| ||||||||    
T  30476360 agacctaatcta 30476371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 349 - 475
Target Start/End: Original strand, 28220029 - 28220157
Alignment:
Q  349 tgtgaattaagactcaaaa-tcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataa 447  Q
    ||||||||  ||||||||| ||||| ||||| |||| | |||||||| | ||| | ||| | |||||| |||| | ||| | ||||| ||||||||||||    
T  28220029 tgtgaattcggactcaaaactcacaccaatacaaactatgatgtgtggaacaaagaaaattagtaaccaatattaaagtgaacacaaacaacaacaataa 28220128  T
Q  448 caa-aacacatagatctaatctagaaatc 475  Q
     || ||||| |||||||||||||| ||||    
T  28220129 taacaacacctagatctaatctagtaatc 28220157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 346 - 475
Target Start/End: Original strand, 47038216 - 47038346
Alignment:
Q  346 tgctgtgaattaagactcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaat 445  Q
    |||||||||||  |||||||||||||| ||||| |||| | |||||||| | ||| ||||||| |||||| |||||| ||||| ||||| ||| |||||     
T  47038216 tgctgtgaatttggactcaaaatcacaccaatacaaactatgatgtgtggaacaaaggaaagtagtaaccaatatcaaagtaaacacaaacaataacaac 47038315  T
Q  446 aacaa-aacacatagatctaatctagaaatc 475  Q
    || || ||||| |||||||||||||| ||||    
T  47038316 aataacaacacctagatctaatctaggaatc 47038346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 349 - 475
Target Start/End: Original strand, 52467160 - 52467289
Alignment:
Q  349 tgtgaattaagactcaaaa-tcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaa-caacaata 446  Q
    ||||||||  ||||||||| ||||| ||||| |||| | |||||||| ||||| |||||||||||||| |||||| |||||  |||||||| || |||||    
T  52467160 tgtgaattcggactcaaaactcacaccaatacaaactatgatgtgtgaagcaaaggaaagtggtaaccaatatcaaagtaaagacaagcaatcatcaata 52467259  T
Q  447 acaa-aacacatagatctaatctagaaatc 475  Q
    | || |||||||||||||||||||| ||||    
T  52467260 ataacaacacatagatctaatctagtaatc 52467289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 387 - 470
Target Start/End: Original strand, 6542028 - 6542109
Alignment:
Q  387 gatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataacaaaacacatagatctaatctag 470  Q
    |||||||| ||||| |||||||  ||||| |||||| ||||||||||||||||||||||||||||  || ||||||||||||||    
T  6542028 gatgtgtggagcaaaggaaagtaataaccaatatcaaagtaatcacaagcaacaacaataacaaa--acctagatctaatctag 6542109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 349 - 444
Target Start/End: Original strand, 48893446 - 48893541
Alignment:
Q  349 tgtgaattaagactcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaa 444  Q
    ||||||||  |||||||||||||| ||||| |||| | |||||||| ||||| ||||||| |||||| |||||| ||||| ||||||||| |||||    
T  48893446 tgtgaattcggactcaaaatcacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaaccaatatcaaagtaaacacaagcaataacaa 48893541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 359 - 475
Target Start/End: Complemental strand, 5872170 - 5872055
Alignment:
Q  359 gactcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataacaa-aacacat 457  Q
    |||||||||||||| ||||| ||||   |||||||| ||||| ||||||| |||||| |||||| ||| | ||||| |||||||||||| || ||||| |    
T  5872170 gactcaaaatcacaccaatacaaact--gatgtgtggagcaaaggaaagtagtaaccaatatcaaagtgaacacaaacaacaacaataataacaacacct 5872073  T
Q  458 agatctaatctagaaatc 475  Q
    ||||||||||||| ||||    
T  5872072 agatctaatctagtaatc 5872055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 349 - 466
Target Start/End: Original strand, 36463199 - 36463317
Alignment:
Q  349 tgtgaattaagactcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataac 448  Q
    ||||||||  ||||||||||||||  |||| |||| | |||||||| || || |||||||  ||||| |||||| ||||| ||||||||||||||||||     
T  36463199 tgtgaattcggactcaaaatcacactaatacaaactatgatgtgtggagtaaaggaaagtaataaccaatatcaaagtaaacacaagcaacaacaataat 36463298  T
Q  449 aa-aacacatagatctaat 466  Q
    || ||||| ||||||||||    
T  36463299 aacaacacctagatctaat 36463317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 349 - 475
Target Start/End: Original strand, 12743731 - 12743856
Alignment:
Q  349 tgtgaattaagactcaaaa-tcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataa 447  Q
    ||||||||  ||||||||| ||||| ||||| |||| | | |||||| ||||| ||||||| |||||| || ||| ||||| |||||||||||| |||||    
T  12743731 tgtgaattcggactcaaaactcacaccaatacaaactatgttgtgtggagcaaaggaaagtagtaaccaatttcaaagtaaacacaagcaacaataataa 12743830  T
Q  448 caaaacacatagatctaatctagaaatc 475  Q
    |  ||||| |||||||||||||| ||||    
T  12743831 c--aacacctagatctaatctagtaatc 12743856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 349 - 475
Target Start/End: Original strand, 26175439 - 26175567
Alignment:
Q  349 tgtgaattaagactcaaaa-tcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataa 447  Q
    ||||||||  ||||||||| ||||| ||||| |||| | |||||||| ||||| ||||||| |||||| || ||| ||||| ||||||||| | ||||||    
T  26175439 tgtgaattcggactcaaaactcacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaaccaatttcaaagtaaacacaagcaatagcaataa 26175538  T
Q  448 caa-aacacatagatctaatctagaaatc 475  Q
     || ||||| |||||||||||||| ||||    
T  26175539 taacaacacctagatctaatctagtaatc 26175567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 349 - 475
Target Start/End: Original strand, 45686990 - 45687117
Alignment:
Q  349 tgtgaattaagactcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatc-acaagcaacaacaataa 447  Q
    |||||||| ||||||||||||||| ||||| |||| | ||||| || ||||| ||||||| |||||| |||||| || || | |||||||||||||||||    
T  45686990 tgtgaattcagactcaaaatcacaccaatacaaactatgatgtatggagcaaaggaaagtagtaaccaatatcaaagcaaacaacaagcaacaacaataa 45687089  T
Q  448 caa-aacacatagatctaatctagaaatc 475  Q
     || ||||| |||||| ||||||| ||||    
T  45687090 taacaacacctagatc-aatctagtaatc 45687117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 359 - 475
Target Start/End: Complemental strand, 48143403 - 48143285
Alignment:
Q  359 gactcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaa----caacaataacaaaaca 454  Q
    |||||||||||||| ||||| |||| | |||||||| ||||| ||||||| |||||| |||||| ||| | |||||||||    ||||||||||  ||||    
T  48143403 gactcaaaatcacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaaccaatatcaaagtgaacacaagcaataatcaacaataac--aaca 48143306  T
Q  455 catagatctaatctagaaatc 475  Q
    | |||||||||||||| ||||    
T  48143305 cctagatctaatctaggaatc 48143285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 366 - 470
Target Start/End: Complemental strand, 31474494 - 31474389
Alignment:
Q  366 aatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataacaa-aacacatagatcta 464  Q
    ||||||| ||||| |||||| |||||||| |||||  |||||| |||| | |||||| ||||| ||||| ||||||||| || || ||||| ||||||||    
T  31474494 aatcacaccaatacaaacaatgatgtgtgtagcaaatgaaagtagtaatcaatatcaaagtaaacacaaacaacaacaacaataacaacacctagatcta 31474395  T
Q  465 atctag 470  Q
    ||||||    
T  31474394 atctag 31474389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 387 - 475
Target Start/End: Original strand, 46147237 - 46147326
Alignment:
Q  387 gatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataacaa-aacacatagatctaatctagaaatc 475  Q
    |||||||| ||||| ||||||| |||||| |||||| ||| | |||||||||||||||||| || || || |||||||||||||| ||||    
T  46147237 gatgtgtggagcaaaggaaagtagtaaccaatatcaaagtgaacacaagcaacaacaataataacaatacctagatctaatctagtaatc 46147326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 349 - 438
Target Start/End: Original strand, 56178439 - 56178528
Alignment:
Q  349 tgtgaattaagactcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaa 438  Q
    ||||||||  |||||||||||||| ||||| |||| | |||||||| ||||| ||||||| |||||| |||||| ||| | |||||||||    
T  56178439 tgtgaattcggactcaaaatcacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaaccaatatcaaagtgaacacaagcaa 56178528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 360 - 444
Target Start/End: Complemental strand, 24970016 - 24969933
Alignment:
Q  360 actcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaa 444  Q
    |||||||||||||   || |||||||||||||||| ||||| ||||||| |||||| |||||| | ||||||||| |||||||||    
T  24970016 actcaaaatcacactgatgaaaacaaagatgtgtg-agcaaaggaaagtagtaaccaatatcaaaataatcacaaccaacaacaa 24969933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 453
Target Start/End: Complemental strand, 4588278 - 4588212
Alignment:
Q  387 gatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataacaaaac 453  Q
    |||||||| ||||| ||||| | ||||||  ||||| || |||||||| ||||||||||||||||||    
T  4588278 gatgtgtggagcaaaggaaaatagtaaccactatcaaagcaatcacaaacaacaacaataacaaaac 4588212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 453
Target Start/End: Complemental strand, 51338381 - 51338331
Alignment:
Q  403 gaaagtggtaacctatatcatagtaatcacaagcaacaacaataacaaaac 453  Q
    |||||| |||| | |||||| |||| |||||||||||||||||||||||||    
T  51338381 gaaagtagtaatcaatatcaaagtagtcacaagcaacaacaataacaaaac 51338331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 422
Target Start/End: Original strand, 29999644 - 29999705
Alignment:
Q  361 ctcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatca 422  Q
    |||||||||||| ||||| |||| | |||||||| ||||| ||||||| |||||| ||||||    
T  29999644 ctcaaaatcacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaaccaatatca 29999705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 438
Target Start/End: Original strand, 52082466 - 52082555
Alignment:
Q  349 tgtgaattaagactcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaa 438  Q
    ||||||||  |||||||||||||| ||||| |||  | |||||||| | ||| ||||||| |||||| |||||| ||| | |||||||||    
T  52082466 tgtgaattcggactcaaaatcacaccaatacaaattatgatgtgtggaacaaaggaaagtagtaaccaatatcaaagtgaacacaagcaa 52082555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 438
Target Start/End: Original strand, 54199711 - 54199800
Alignment:
Q  349 tgtgaattaagactcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaa 438  Q
    ||||||||  |||||||||||||| ||||| |||| | ||||| || ||||| ||||||| ||||||  ||||| ||| | |||||||||    
T  54199711 tgtgaattcggactcaaaatcacaccaatacaaacgatgatgtatggagcaaaggaaagtagtaaccagtatcaaagtgaacacaagcaa 54199800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 362 - 422
Target Start/End: Original strand, 34570230 - 34570290
Alignment:
Q  362 tcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatca 422  Q
    ||||||||||| ||||| |||| | |||||||| ||||| ||||||| |||||| ||||||    
T  34570230 tcaaaatcacaccaatataaactatgatgtgtggagcaaaggaaagtagtaaccaatatca 34570290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 424 - 475
Target Start/End: Complemental strand, 36994808 - 36994756
Alignment:
Q  424 agtaatcacaagcaacaacaataacaa-aacacatagatctaatctagaaatc 475  Q
    ||||| |||||||||||||||||| || ||||| |||||||||||||| ||||    
T  36994808 agtaaacacaagcaacaacaataataacaacacctagatctaatctagtaatc 36994756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 349 - 444
Target Start/End: Original strand, 148915 - 149010
Alignment:
Q  349 tgtgaattaagactcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaa 444  Q
    ||||||||  |||||||||||||||||||| |||| |  ||||||| ||||| ||||||| |||||| | |||| ||||| ||||||||| |||||    
T  148915 tgtgaattcggactcaaaatcacatcaatacaaactataatgtgtggagcaaaggaaagtagtaaccaacatcaaagtaaacacaagcaataacaa 149010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 361 - 475
Target Start/End: Original strand, 28137226 - 28137341
Alignment:
Q  361 ctcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataacaa-aacacatag 459  Q
    |||||||||||| ||||| |||| | || ||||| ||||| ||||||| |||||| |||||| ||||| ||||||||| ||| | || || |||||||||    
T  28137226 ctcaaaatcacaccaatacaaactatgacgtgtggagcaaaggaaagtagtaaccaatatcaaagtaaacacaagcaataacgacaataacaacacatag 28137325  T
Q  460 atctaatctagaaatc 475  Q
    ||||||| ||| ||||    
T  28137326 atctaatataggaatc 28137341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 361 - 475
Target Start/End: Original strand, 5408885 - 5409001
Alignment:
Q  361 ctcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaa----caacaataacaaaacaca 456  Q
    |||||| ||||| ||||| |||| | |||||||| ||||| ||||||| |||||| |||||| ||| | |||||||||    ||||||||||||  |||     
T  5408885 ctcaaagtcacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaaccaatatcaaagtgagcacaagcaataatcaacaataacaa--cacc 5408982  T
Q  457 tagatctaatctagaaatc 475  Q
    |||||||||||||| ||||    
T  5408983 tagatctaatctaggaatc 5409001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 361 - 475
Target Start/End: Original strand, 5413210 - 5413326
Alignment:
Q  361 ctcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaa----caacaataacaaaacaca 456  Q
    |||||| ||||| ||||| |||| | |||||||| ||||| ||||||| |||||| |||||| ||| | |||||||||    ||||||||||||  |||     
T  5413210 ctcaaagtcacaccaatacaaactatgatgtgtggagcaaaggaaagtagtaaccaatatcaaagtgagcacaagcaataatcaacaataacaa--cacc 5413307  T
Q  457 tagatctaatctagaaatc 475  Q
    |||||||||||||| ||||    
T  5413308 tagatctaatctaggaatc 5413326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 410 - 475
Target Start/End: Original strand, 14521546 - 14521612
Alignment:
Q  410 gtaacctatatcatagtaatcacaagcaacaacaataacaa-aacacatagatctaatctagaaatc 475  Q
    |||||| || ||| ||||| ||||||||||||||||||||| ||||| |||||||||||||| ||||    
T  14521546 gtaaccaatttcaaagtaaacacaagcaacaacaataacaacaacacctagatctaatctaggaatc 14521612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 343 - 475
Target Start/End: Original strand, 26954088 - 26954221
Alignment:
Q  343 tagtgctgtgaattaagactcaaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaac 442  Q
    ||||| ||||||||  |||||||||||||| ||||| |||| | |||||||| |||||  |||||| |||||| || ||| ||||| || ||| || |||    
T  26954088 tagtgttgtgaattcggactcaaaatcacaccaatacaaactatgatgtgtggagcaaaagaaagtagtaaccaatttcaaagtaaacataagaaataac 26954187  T
Q  443 aataacaa-aacacatagatctaatctagaaatc 475  Q
    || || || | ||| |||||||||||||| ||||    
T  26954188 aacaataacagcacctagatctaatctaggaatc 26954221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 364 - 475
Target Start/End: Original strand, 33160169 - 33160281
Alignment:
Q  364 aaaatcacatcaataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaacaacaataacaa-aacacatagatc 462  Q
    ||||||| | ||||| |||| | |||||||| ||||| ||||| | |||||| || ||| |||||  ||||||||||||||||  || ||||| ||||||    
T  33160169 aaaatcataccaatacaaactatgatgtgtggagcaaaggaaaatagtaaccaatttcaaagtaaatacaagcaacaacaatattaacaacacctagatc 33160268  T
Q  463 taatctagaaatc 475  Q
    |||||||| ||||    
T  33160269 taatctagtaatc 33160281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 475
Target Start/End: Original strand, 9182859 - 9182962
Alignment:
Q  374 caataaaaacaaagatgtgtgcagcaatggaaagtggtaacctatatcatagtaatcacaagcaa----caacaataacaaaacacatagatctaatcta 469  Q
    ||||| |||| | |||||||| ||||| ||||||| |||||| |||||| ||| | |||||||||    ||||||||||||  ||| |||||||||||||    
T  9182859 caatacaaactatgatgtgtggagcaaaggaaagtagtaaccaatatcaaagtgaacacaagcaataatcaacaataacaa--cacctagatctaatcta 9182956  T
Q  470 gaaatc 475  Q
    | ||||    
T  9182957 ggaatc 9182962  T

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