View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21257_high_10 (Length: 409)
Name: NF21257_high_10
Description: NF21257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21257_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 392
Target Start/End: Complemental strand, 27964054 - 27963679
Alignment:
| Q |
1 |
ccaacatagccttttagaatgccggaaaccggtcctcggtttcgccggaagtttcgaatgcatgtcaccaatactgcagtgttcatccatgttgtactgt |
100 |
Q |
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| T |
27964054 |
ccaacatagccttttagaatgccggaaaccggtcctcggtttcgccggaagtttcgaatgcatgtcaccaatactgcagtgttcatccatgttgtactgt |
27963955 |
T |
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| Q |
101 |
tccctcccatgcacaagaacacacacatctaacnnnnnnnnngataatcataataagaattaatcaagattaatactaaagatccaattttcttgcgacc |
200 |
Q |
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| T |
27963954 |
tccctcccatgcacaagaacacacacatctaacaaaaaaaaagataatcataataagaattaatcaagattaatactaaagatccaattttcttgggacc |
27963855 |
T |
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| Q |
201 |
caattcagtccaaatttgtctgaatgtgaggactaatttgctaaatctttctaagaatgtaagtattaattgattaagaggaaaaagtgactagcaatat |
300 |
Q |
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| T |
27963854 |
caattcagtccaaatttgtctgaatgtcaggactaatttgctaaat----------------gtattaattgattaagaggaaaaagtgactagcaatat |
27963771 |
T |
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| Q |
301 |
tacctgccaataaggaaggggttgaatgtattgaccaacaacaagccattgaacaccataaccgatgagaccttcaaaagaaccgataagaa |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27963770 |
tacctgccaataaggaaggggttgaatgtattgaccaacaacaagccattgaacaccataaccgatgagaccttcaaaagaaccgataagaa |
27963679 |
T |
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