View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21257_high_11 (Length: 359)
Name: NF21257_high_11
Description: NF21257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21257_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 171; Significance: 9e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 16991114 - 16991461
Alignment:
| Q |
1 |
cacaaacacatgggttacatcacgcaggttctgatcaatcaacaacctacggagtaatataccactggtacaaaataacagatgcgnnnnnnnccctctc |
100 |
Q |
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||||||||||||||||| | ||| ||||||| ||||| ||| |||||| ||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
16991114 |
cacaaacacatgggttataccactcaggttccgatcactcagcaaccttcggagtaatataccactggtacaaaataacagatgggtgtttttccctctc |
16991213 |
T |
|
| Q |
101 |
attccctctaaccgaattttgaaaccaacctatcaaaaaagctctgttgtggtatagcaggaagaacaaagatattcccaattttaaaatctcattgtaa |
200 |
Q |
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||||| |||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
16991214 |
attccttctaaccgaactttgaagccaacctatcaaaaaacctctgttgtggtatagcaggaagaacaaagatattcccaattttaaaatctcattgaaa |
16991313 |
T |
|
| Q |
201 |
agcnnnnnnnttaattgacgaatattttattttcttaatgtataataatatctgtattc-aatgttttctgcacaactacatttgtttgtgttttggtcc |
299 |
Q |
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||| ||||||| ||||||||||||||||||||| | |||| ||| | ||| | ||||||||| |||||||||||||||| ||||||||| | |
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| T |
16991314 |
agcaaaaaatataattgatgaatattttattttcttaatgaaaaatagtat-tttatactcgtgttttctgtacaactacatttgtttctgttttggtac |
16991412 |
T |
|
| Q |
300 |
atttcaagaaaaagcggacttactgtgccacccagtgactctcctctct |
348 |
Q |
| |
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|||||||||||||| ||||||||||| | ||||| ||||||||||||| |
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| T |
16991413 |
atttcaagaaaaagaggacttactgtttctcccagagactctcctctct |
16991461 |
T |
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