View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21257_high_12 (Length: 325)
Name: NF21257_high_12
Description: NF21257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21257_high_12 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 310; Significance: 1e-175; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 310; E-Value: 1e-175
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 45616592 - 45616917
Alignment:
| Q |
1 |
catgagatttggctatgaaaagttaacaagtaaaaggatgatgagagtaggaaaacgttgcatttgggtgaagtctttgaatggaaaactacgtggtcta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45616592 |
catgagatttggctatgaaaagttaacaagtaaaaggatgatgagagtaggaaaacgttgcatttgggtgaagtctttgaatggaaaactacgtggtcta |
45616691 |
T |
|
| Q |
101 |
aggttatcacgttctaggaagtttttctctacaatgctcttttcaactagaattgtaagaatctacaatgatattgtgaacaaaattatgaacatggaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45616692 |
aggttatcacgttctaggaagtttttctctacaatgctctattcaactagaattgtaagaatctacaatgatattgtgaacaaaattatgaacatggaaa |
45616791 |
T |
|
| Q |
201 |
acagttatccagttattgttctacctactcaatggggtcttcctgttctgtctcacccctcagttgtttgcagaaggagtgtaatggtccctccaaacag |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45616792 |
acagttatccagttattgttctacctactcaatggggtcttcctgttctgtctcatccctcagttgtttgcagaaggagtgtaatggtccctccaaacag |
45616891 |
T |
|
| Q |
301 |
-aaagtgactttctattagtcctttt |
325 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
45616892 |
aaaagtgactttctattagtcctttt |
45616917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University