View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21257_high_14 (Length: 275)

Name: NF21257_high_14
Description: NF21257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21257_high_14
NF21257_high_14
[»] chr4 (4 HSPs)
chr4 (2-44)||(5732460-5732502)
chr4 (7-44)||(3813818-3813857)
chr4 (7-44)||(45348068-45348107)
chr4 (7-44)||(45357547-45357586)
[»] chr3 (1 HSPs)
chr3 (2-44)||(18656230-18656272)
[»] scaffold0127 (1 HSPs)
scaffold0127 (7-44)||(34200-34237)
[»] chr7 (2 HSPs)
chr7 (7-44)||(31109833-31109870)
chr7 (7-44)||(24024578-24024616)
[»] chr5 (1 HSPs)
chr5 (7-44)||(15044486-15044523)
[»] chr2 (2 HSPs)
chr2 (7-44)||(39812239-39812276)
chr2 (7-44)||(32246579-32246618)
[»] chr1 (3 HSPs)
chr1 (7-44)||(41386545-41386582)
chr1 (7-44)||(41398034-41398071)
chr1 (7-44)||(44024124-44024161)
[»] chr8 (2 HSPs)
chr8 (7-44)||(25328529-25328566)
chr8 (7-44)||(39785075-39785112)
[»] scaffold0355 (1 HSPs)
scaffold0355 (7-44)||(9891-9928)
[»] chr6 (3 HSPs)
chr6 (7-44)||(14737827-14737864)
chr6 (7-44)||(14742686-14742723)
chr6 (7-44)||(28184299-28184336)


Alignment Details
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 5732502 - 5732460
Alignment:
Q  2 tattctcattggtgtgaaggtttctttggaaccggattcacaa 44  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  5732502 tattttcattggtgtgaaggtttctttggaaccggattcacaa 5732460  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 3813857 - 3813818
Alignment:
Q  7 tcattggtgtgaaggtttctttg--gaaccggattcacaa 44  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  3813857 tcattggtgtgaaggtttctttgtagaaccggattcacaa 3813818  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 45348068 - 45348107
Alignment:
Q  7 tcattggtgtgaaggtttctttg--gaaccggattcacaa 44  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  45348068 tcattggtgtgaaggtttctttgtagaaccggattcacaa 45348107  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 45357547 - 45357586
Alignment:
Q  7 tcattggtgtgaaggtttctttg--gaaccggattcacaa 44  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  45357547 tcattggtgtgaaggtttctttgtagaaccggattcacaa 45357586  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 18656272 - 18656230
Alignment:
Q  2 tattctcattggtgtgaaggtttctttggaaccggattcacaa 44  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  18656272 tattttcattggtgtgaaggtttctttggaaccggattcacaa 18656230  T

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Target: scaffold0127 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 34200 - 34237
Alignment:
Q  7 tcattggtgtgaaggtttctttggaaccggattcacaa 44  Q
    ||||||||||||||||||||||||||||||||||||||    
T  34200 tcattggtgtgaaggtttctttggaaccggattcacaa 34237  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 31109833 - 31109870
Alignment:
Q  7 tcattggtgtgaaggtttctttggaaccggattcacaa 44  Q
    ||||||||||||||||||||||||||||||||||||||    
T  31109833 tcattggtgtgaaggtttctttggaaccggattcacaa 31109870  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 24024578 - 24024616
Alignment:
Q  7 tcattggtgtgaaggttt-ctttggaaccggattcacaa 44  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  24024578 tcattggtgtgaaggttttctttggaaccggattcacaa 24024616  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 15044523 - 15044486
Alignment:
Q  7 tcattggtgtgaaggtttctttggaaccggattcacaa 44  Q
    ||||||||||||||||||||||||||||||||||||||    
T  15044523 tcattggtgtgaaggtttctttggaaccggattcacaa 15044486  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 39812239 - 39812276
Alignment:
Q  7 tcattggtgtgaaggtttctttggaaccggattcacaa 44  Q
    ||||||||||||||||||||||||||||||||||||||    
T  39812239 tcattggtgtgaaggtttctttggaaccggattcacaa 39812276  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 32246618 - 32246579
Alignment:
Q  7 tcattggtgtgaaggtttctttg--gaaccggattcacaa 44  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  32246618 tcattggtgtgaaggtttctttgtagaaccggattcacaa 32246579  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 41386582 - 41386545
Alignment:
Q  7 tcattggtgtgaaggtttctttggaaccggattcacaa 44  Q
    ||||||||||||||||||||||||||||||||||||||    
T  41386582 tcattggtgtgaaggtttctttggaaccggattcacaa 41386545  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 41398071 - 41398034
Alignment:
Q  7 tcattggtgtgaaggtttctttggaaccggattcacaa 44  Q
    ||||||||||||||||||||||||||||||||||||||    
T  41398071 tcattggtgtgaaggtttctttggaaccggattcacaa 41398034  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 44024124 - 44024161
Alignment:
Q  7 tcattggtgtgaaggtttctttggaaccggattcacaa 44  Q
    |||||||||||||||||| ||||||| |||||||||||    
T  44024124 tcattggtgtgaaggtttatttggaatcggattcacaa 44024161  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 25328529 - 25328566
Alignment:
Q  7 tcattggtgtgaaggtttctttggaaccggattcacaa 44  Q
    |||||| |||||||||||||||||||||||||||||||    
T  25328529 tcattgttgtgaaggtttctttggaaccggattcacaa 25328566  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 39785075 - 39785112
Alignment:
Q  7 tcattggtgtgaaggtttctttggaaccggattcacaa 44  Q
    |||||||||||||||||||||||||||| |||||||||    
T  39785075 tcattggtgtgaaggtttctttggaaccagattcacaa 39785112  T

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Target: scaffold0355 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0355
Description:

Target: scaffold0355; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 9891 - 9928
Alignment:
Q  7 tcattggtgtgaaggtttctttggaaccggattcacaa 44  Q
    |||||||||||||||||| |||| ||||||||||||||    
T  9891 tcattggtgtgaaggtttgtttgaaaccggattcacaa 9928  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 14737827 - 14737864
Alignment:
Q  7 tcattggtgtgaaggtttctttggaaccggattcacaa 44  Q
    |||||||||||||||||| |||| ||||||||||||||    
T  14737827 tcattggtgtgaaggtttatttgaaaccggattcacaa 14737864  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 14742686 - 14742723
Alignment:
Q  7 tcattggtgtgaaggtttctttggaaccggattcacaa 44  Q
    |||||||||||||||||| |||| ||||||||||||||    
T  14742686 tcattggtgtgaaggtttatttgaaaccggattcacaa 14742723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 28184336 - 28184299
Alignment:
Q  7 tcattggtgtgaaggtttctttggaaccggattcacaa 44  Q
    |||||||||||||||||| |||| ||||||||||||||    
T  28184336 tcattggtgtgaaggtttgtttgaaaccggattcacaa 28184299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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